Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003795

Physical Location & Seq

Genomic Coordinates Forward (+)

12795350 .. 12795938

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g16780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAACGCCGCCACCACGACGTTTCCCTCCATTCTCGAGAAGCCCCTCAACCAGCTCACCGAGGATGACATTTCCCAGCTCACCCGCGAAGACTGCCGCAAGTACCTCAAAGAAAAAGGAATGCGGCGGCCCTCTTGGAACAAATCGCAGGCGATCCAGCAGGTTATTTCCCTCAAGGCGCTGCTGGAGCCCAACGAAGATTCCGGCGCCGGAGCTCTCAGAAAGATTGTCGTTTCGGCTCAGACGACCACCGCCACCACCCAGCGTGTCAGTACTTTTTTATGCCGCTTCGAATTCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007275 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

101

Amino Acids

11.32

Weight (kDa)

9.39

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14713 AT4G14713 AT4G14713 AT4G14713 AT4G14713 AT4G14720 AT4G14720
fragaria_vesca	FvH4_4g01120 FvH4_4g01120
malus_domestica	MD13G1199500.v1.1 MD16G1199200.v1.1
prunus_persica	Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1
pyrus_communis	pycom13g17310 pycom16g16780
rosa_chinensis	RchiOBHm_Chr4g0387691
rosa_laevigata	RLG00000010101
rosa_multiflora	Rmu_sc0006621.1_g000001 Rmu_sc0015409.1_g000001 Rmu_sc0028325.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334340
rosa_rugosa	Rorug03G0312500 Rorug03G0312600 Rorug03G0312700
rosa_samantha	Rh4AG017700 Rh4BG012600 Rh4CG018900 Rh4DG013500
rosa_wichuraiana	Rw4G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	151
AccB1I	GGYRCC	1 cut(s)	206
AccII	CGCG	1 cut(s)	87
AciI	CCGC	8 cut(s)	9, 85, 97, 124, 127, 252, 286, 298
AclWI	GGATC	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	293
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	2 cut(s)	104, 274
AluBI	AGCT	3 cut(s)	55, 79, 215
AluI	AGCT	3 cut(s)	55, 79, 215
Alw21I	GWGCWC	1 cut(s)	217
AlwI	GGATC	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	181
ApoI	RAATTY	1 cut(s)	293
AspLEI	GCGC	2 cut(s)	181, 209
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	49, 73
AsuII	TTCGAA	1 cut(s)	291
AvaI	CYCGRG	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	206
BanII	GRGCYC	2 cut(s)	192, 217
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	168
BfoI	RGCGCY	2 cut(s)	182, 210
BfuAI	ACCTGC	1 cut(s)	151
BisI	GCNGC	6 cut(s)	9, 97, 125, 128, 182, 286
BlsI	GCNGC	6 cut(s)	10, 98, 126, 129, 183, 287
BmcAI	AGTACT	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	2 cut(s)	189, 208
BpiI	GAAGAC	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	206
Bpu14I	TTCGAA	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	70
BseMII	CTCAG	2 cut(s)	232, 254
BseXI	GCAGC	1 cut(s)	168
BseYI	CCCAGC	2 cut(s)	75, 261
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	130
BshNI	GGYRCC	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	2 cut(s)	204, 210
BsmI	GAATGC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	130
BsoBI	CYCGRG	1 cut(s)	35
Bsp119I	TTCGAA	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	192, 217
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	8 cut(s)	9, 85, 97, 124, 127, 252, 286, 298
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	2 cut(s)	231, 253
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	189, 208
BspMI	ACCTGC	1 cut(s)	151
BspPI	GGATC	1 cut(s)	148
BspT104I	TTCGAA	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	153
BssNI	GRCGYC	1 cut(s)	207
BstACI	GRCGYC	1 cut(s)	207
BstBI	TTCGAA	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	2 cut(s)	218, 240
BstF5I	GGATG	1 cut(s)	70
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	2 cut(s)	182, 210
BstHHI	GCGC	2 cut(s)	181, 209
BstKTI	GATC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 187
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	168
BstV2I	GAAGAC	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	70
BveI	ACCTGC	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	150
CfoI	GCGC	2 cut(s)	181, 209
Cfr13I	GGNCC	1 cut(s)	129
Csp6I	GTAC	2 cut(s)	103, 273
CviJI	RGCY	7 cut(s)	43, 55, 79, 130, 190, 215, 239
CviKI_1	RGCY	7 cut(s)	43, 55, 79, 130, 190, 215, 239
CviQI	GTAC	2 cut(s)	103, 273
DdeI	CTNAG	2 cut(s)	218, 240
DinI	GGCGCC	1 cut(s)	208
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
Ecl136II	GAGCTC	1 cut(s)	215
Eco24I	GRGCYC	2 cut(s)	192, 217
Eco53kI	GAGCTC	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	293
EcoT38I	GRGCYC	2 cut(s)	192, 217
EgeI	GGCGCC	1 cut(s)	208
EheI	GGCGCC	1 cut(s)	208
FaiI	YATR	1 cut(s)	283
FauI	CCCGC	1 cut(s)	92
Fnu4HI	GCNGC	6 cut(s)	9, 97, 125, 128, 182, 286
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	2 cut(s)	192, 217
Fsp4HI	GCNGC	6 cut(s)	9, 97, 125, 128, 182, 286
GlaI	GCGC	2 cut(s)	180, 208
GluI	GCNGC	6 cut(s)	9, 97, 125, 128, 182, 286
GsaI	CCCAGC	2 cut(s)	79, 265
GsuI	CTGGAG	1 cut(s)	206
HaeII	RGCGCY	2 cut(s)	182, 210
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	2 cut(s)	204, 210
HhaI	GCGC	2 cut(s)	181, 209
Hin1I	GRCGYC	1 cut(s)	207
Hin6I	GCGC	2 cut(s)	179, 207
HinP1I	GCGC	2 cut(s)	179, 207
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	2 cut(s)	204, 210
HphI	GGTGA	2 cut(s)	49, 73
Hpy188I	TCNGA	2 cut(s)	221, 243
Hpy188III	TCNNGA	2 cut(s)	35, 37
Hpy99I	CGWCG	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 187
HpyF3I	CTNAG	2 cut(s)	218, 240
HpySE526I	ACGT	1 cut(s)	20
Hsp92I	GRCGYC	1 cut(s)	207
HspAI	GCGC	2 cut(s)	179, 207
KasI	GGCGCC	1 cut(s)	206
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	2 cut(s)	187, 212
LpnPI	CCDG	9 cut(s)	65, 89, 134, 146, 170, 170, 217, 223, 275
Lsp1109I	GCAGC	1 cut(s)	168
MaeII	ACGT	1 cut(s)	20
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	2 cut(s)	101, 209
MhlI	GDGCHC	2 cut(s)	192, 217
MluCI	AATT	1 cut(s)	293
Mly113I	GGCGCC	1 cut(s)	207
MnlI	CCTC	6 cut(s)	37, 55, 56, 116, 142, 182
MspA1I	CMGCKG	1 cut(s)	300
MspI	CCGG	2 cut(s)	204, 210
Mva1269I	GAATGC	1 cut(s)	126
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	93, 187
NarI	GGCGCC	1 cut(s)	207
NdeII	GATC	1 cut(s)	153
NlaIV	GGNNCC	2 cut(s)	189, 208
NspV	TTCGAA	1 cut(s)	291
PaeR7I	CTCGAG	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PctI	GAATGC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	6 cut(s)	10, 98, 126, 129, 183, 287
PluTI	GGCGCC	1 cut(s)	210
Psp124BI	GAGCTC	1 cut(s)	217
PspFI	CCCAGC	2 cut(s)	75, 261
PspN4I	GGNNCC	2 cut(s)	189, 208
PspPI	GGNCC	1 cut(s)	129
RsaI	GTAC	2 cut(s)	104, 274
RsaNI	GTAC	2 cut(s)	103, 273
SacI	GAGCTC	1 cut(s)	217
SatI	GCNGC	6 cut(s)	9, 97, 125, 128, 182, 286
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	1 cut(s)	129
ScaI	AGTACT	1 cut(s)	274
SduI	GDGCHC	2 cut(s)	192, 217
SetI	ASST	6 cut(s)	23, 57, 81, 108, 165, 217
SfoI	GGCGCC	1 cut(s)	208
Sfr274I	CTCGAG	1 cut(s)	35
SfuI	TTCGAA	1 cut(s)	291
SlaI	CTCGAG	1 cut(s)	35
SmlI	CTYRAG	2 cut(s)	35, 173
SmoI	CTYRAG	2 cut(s)	35, 173
Sse9I	AATT	1 cut(s)	293
SsiI	CCGC	8 cut(s)	9, 85, 97, 124, 127, 252, 286, 298
SspDI	GGCGCC	1 cut(s)	206
SstI	GAGCTC	1 cut(s)	217
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	2 cut(s)	36, 291
TasI	AATT	1 cut(s)	293
TatI	WGTACW	1 cut(s)	272
TauI	GCSGC	5 cut(s)	11, 99, 127, 130, 288
TfiI	GAWTC	1 cut(s)	200
TseI	GCWGC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	293
XhoI	CTCGAG	1 cut(s)	35
ZrmI	AGTACT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.