Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028325.1

Orthogroup ID

OG0003795

Physical Location & Seq

Genomic Coordinates Forward (+)

630 .. 1337

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028325.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgagtgccggcactactacaaccactacaacgacgacgtttcgcaccatcctggagaagccgctcaaccagctcaccgaggatgacatttctcagctcacccgcgaagactgccgcaagtacctcaaagaaaaaggaatgcggaggccgtcgtggaacaaatcgcaggcgatccagcaggttatttcactcaaggcgctgctggagcccaacgacgactccggcgccggagttctcagaaagatcgtcggtccgccgcatgggaccgcgcccgcgccgcgggcggcttcgaattcgactgattcaacgaaggaggccagtgccgatgtccagggttgtaagtcggccgaagaaccggtggtgctgcagcagaagaaagaactgcagaaaccggttcggcaggaccggccggccgaaccggctgtaaaagccattactccaaggttttgcttctctgccgcgatctgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007275 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

156

Amino Acids

16.99

Weight (kDa)

9.14

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14713 AT4G14713 AT4G14713 AT4G14713 AT4G14713 AT4G14720 AT4G14720
fragaria_vesca	FvH4_4g01120 FvH4_4g01120
malus_domestica	MD13G1199500.v1.1 MD16G1199200.v1.1
prunus_persica	Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1
pyrus_communis	pycom13g17310 pycom16g16780
rosa_chinensis	RchiOBHm_Chr4g0387691
rosa_laevigata	RLG00000010101
rosa_multiflora	Rmu_sc0006621.1_g000001 Rmu_sc0015409.1_g000001 Rmu_sc0028325.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334340
rosa_rugosa	Rorug03G0312500 Rorug03G0312600 Rorug03G0312700
rosa_samantha	Rh4AG017700 Rh4BG012600 Rh4CG018900 Rh4DG013500
rosa_wichuraiana	Rw4G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	169
AccB1I	GGYRCC	1 cut(s)	224
AccBSI	CCGCTC	1 cut(s)	64
AccII	CGCG	5 cut(s)	105, 269, 275, 280, 461
AclWI	GGATC	1 cut(s)	166
AcoI	YGGCCR	3 cut(s)	345, 407, 411
AcsI	RAATTY	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	260, 279
AgeI	ACCGGT	2 cut(s)	355, 391
AgsI	TTSAA	1 cut(s)	306
AjnI	CCWGG	2 cut(s)	51, 330
AluBI	AGCT	2 cut(s)	73, 97
AluI	AGCT	2 cut(s)	73, 97
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	5 cut(s)	146, 315, 345, 407, 411
ApeKI	GCWGC	3 cut(s)	199, 364, 367
ApoI	RAATTY	1 cut(s)	292
AsiGI	ACCGGT	2 cut(s)	355, 391
AspLEI	GCGC	4 cut(s)	199, 227, 271, 277
AspS9I	GGNCC	3 cut(s)	251, 264, 403
AsuHPI	GGTGA	2 cut(s)	67, 91
AsuII	TTCGAA	1 cut(s)	290
AvaII	GGWCC	3 cut(s)	251, 264, 403
BanI	GGYRCC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	114
BbvI	GCAGC	3 cut(s)	186, 351, 379
BccI	CCATC	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	2 cut(s)	53, 332
BfmI	CTRYAG	2 cut(s)	365, 383
BfoI	RGCGCY	2 cut(s)	200, 228
BfuAI	ACCTGC	1 cut(s)	169
BglI	GCCNNNNNGGC	1 cut(s)	419
BisI	GCNGC	9 cut(s)	62, 115, 200, 257, 278, 285, 365, 368, 459
BlsI	GCNGC	9 cut(s)	63, 116, 201, 258, 279, 286, 366, 369, 460
Bme1390I	CCNGG	2 cut(s)	53, 332
Bme18I	GGWCC	3 cut(s)	251, 264, 403
BmgT120I	GGNCC	3 cut(s)	251, 264, 403
BmiI	GGNNCC	3 cut(s)	207, 226, 265
BmrFI	CCNGG	2 cut(s)	53, 332
BpiI	GAAGAC	1 cut(s)	114
BpmI	CTGGAG	2 cut(s)	74, 224
Bpu14I	TTCGAA	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	4 cut(s)	78, 278, 331, 440
BsaWI	WCCGGW	2 cut(s)	355, 391
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 279
Bse118I	RCCGGY	6 cut(s)	8, 355, 391, 405, 409, 418
Bse1I	ACTGG	1 cut(s)	318
BseBI	CCWGG	2 cut(s)	53, 332
BseDI	CCNNGG	4 cut(s)	78, 278, 331, 440
BseGI	GGATG	2 cut(s)	48, 88
BseLI	CCNNNNNNNGG	2 cut(s)	260, 279
BseMII	CTCAG	2 cut(s)	107, 250
BseNI	ACTGG	1 cut(s)	318
BseX3I	CGGCCG	3 cut(s)	345, 407, 411
BseXI	GCAGC	3 cut(s)	186, 351, 379
Bsh1236I	CGCG	5 cut(s)	105, 269, 275, 280, 461
Bsh1285I	CGRYCG	3 cut(s)	348, 410, 414
BshFI	GGCC	5 cut(s)	148, 317, 347, 409, 413
BshNI	GGYRCC	1 cut(s)	224
BshTI	ACCGGT	2 cut(s)	355, 391
BsiEI	CGRYCG	3 cut(s)	348, 410, 414
BsiSI	CCGG	8 cut(s)	9, 222, 228, 356, 392, 406, 410, 419
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	2 cut(s)	260, 279
BsmFI	GGGAC	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	5 cut(s)	148, 317, 347, 409, 413
Bsp119I	TTCGAA	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	3 cut(s)	171, 243, 462
BspANI	GGCC	5 cut(s)	148, 317, 347, 409, 413
BspCNI	CTCAG	2 cut(s)	106, 249
BspFNI	CGCG	5 cut(s)	105, 269, 275, 280, 461
BspLI	GGNNCC	3 cut(s)	207, 226, 265
BspMAI	CTGCAG	2 cut(s)	369, 387
BspMI	ACCTGC	1 cut(s)	169
BspPI	GGATC	1 cut(s)	166
BspT104I	TTCGAA	1 cut(s)	290
BspT107I	GGYRCC	1 cut(s)	224
BsrBI	CCGCTC	1 cut(s)	64
BsrFI	RCCGGY	6 cut(s)	8, 355, 391, 405, 409, 418
BsrI	ACTGG	1 cut(s)	318
BssAI	RCCGGY	6 cut(s)	8, 355, 391, 405, 409, 418
BssECI	CCNNGG	4 cut(s)	78, 278, 331, 440
BssMI	GATC	3 cut(s)	171, 243, 462
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	440
Bst2UI	CCWGG	2 cut(s)	53, 332
BstACI	GRCGYC	1 cut(s)	225
BstBI	TTCGAA	1 cut(s)	290
BstC8I	GCNNGC	5 cut(s)	10, 168, 273, 282, 411
BstDEI	CTNAG	2 cut(s)	93, 236
BstDSI	CCRYGG	1 cut(s)	278
BstF5I	GGATG	2 cut(s)	48, 88
BstFNI	CGCG	5 cut(s)	105, 269, 275, 280, 461
BstH2I	RGCGCY	2 cut(s)	200, 228
BstHHI	GCGC	4 cut(s)	199, 227, 271, 277
BstKTI	GATC	3 cut(s)	174, 246, 465
BstMBI	GATC	3 cut(s)	171, 243, 462
BstMCI	CGRYCG	3 cut(s)	348, 410, 414
BstMWI	GCNNNNNNNGC	8 cut(s)	70, 111, 205, 277, 281, 406, 419, 428
BstNI	CCWGG	2 cut(s)	53, 332
BstSCI	CCNGG	2 cut(s)	51, 330
BstSFI	CTRYAG	2 cut(s)	365, 383
BstUI	CGCG	5 cut(s)	105, 269, 275, 280, 461
BstV1I	GCAGC	3 cut(s)	186, 351, 379
BstV2I	GAAGAC	1 cut(s)	114
BstZI	CGGCCG	3 cut(s)	345, 407, 411
BsuRI	GGCC	5 cut(s)	148, 317, 347, 409, 413
BtgI	CCRYGG	1 cut(s)	278
BtsCI	GGATG	2 cut(s)	48, 88
BtsIMutI	CAGTG	1 cut(s)	325
BveI	ACCTGC	1 cut(s)	169
Cac8I	GCNNGC	5 cut(s)	10, 168, 273, 282, 411
CfoI	GCGC	4 cut(s)	199, 227, 271, 277
Cfr10I	RCCGGY	6 cut(s)	8, 355, 391, 405, 409, 418
Cfr13I	GGNCC	3 cut(s)	251, 264, 403
Cfr42I	CCGCGG	1 cut(s)	281
CpoI	CGGWCCG	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	121
CspAI	ACCGGT	2 cut(s)	355, 391
CspI	CGGWCCG	1 cut(s)	251
CviAII	CATG	1 cut(s)	260
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	2 cut(s)	93, 236
DinI	GGCGCC	1 cut(s)	226
DpnI	GATC	3 cut(s)	173, 245, 464
DpnII	GATC	3 cut(s)	171, 243, 462
EaeI	YGGCCR	3 cut(s)	345, 407, 411
EagI	CGGCCG	3 cut(s)	345, 407, 411
EciI	GGCGGA	1 cut(s)	243
EclXI	CGGCCG	3 cut(s)	345, 407, 411
Eco130I	CCWWGG	1 cut(s)	440
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	3 cut(s)	251, 264, 403
Eco52I	CGGCCG	3 cut(s)	345, 407, 411
EcoRI	GAATTC	1 cut(s)	292
EcoRII	CCWGG	2 cut(s)	51, 330
EcoT14I	CCWWGG	1 cut(s)	440
EcoT38I	GRGCYC	1 cut(s)	210
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	440
FaeI	CATG	1 cut(s)	263
FaiI	YATR	1 cut(s)	261
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	1 cut(s)	259
FauI	CCCGC	3 cut(s)	110, 273, 280
Fnu4HI	GCNGC	9 cut(s)	62, 115, 200, 257, 278, 285, 365, 368, 459
FokI	GGATG	2 cut(s)	35, 95
FriOI	GRGCYC	1 cut(s)	210
FseI	GGCCGGCC	1 cut(s)	413
Fsp4HI	GCNGC	9 cut(s)	62, 115, 200, 257, 278, 285, 365, 368, 459
GlaI	GCGC	4 cut(s)	198, 226, 270, 276
GluI	GCNGC	9 cut(s)	62, 115, 200, 257, 278, 285, 365, 368, 459
GsuI	CTGGAG	2 cut(s)	74, 224
HaeII	RGCGCY	2 cut(s)	200, 228
HaeIII	GGCC	5 cut(s)	148, 317, 347, 409, 413
HapII	CCGG	8 cut(s)	9, 222, 228, 356, 392, 406, 410, 419
HhaI	GCGC	4 cut(s)	199, 227, 271, 277
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	263
Hin6I	GCGC	4 cut(s)	197, 225, 269, 275
HinP1I	GCGC	4 cut(s)	197, 225, 269, 275
HinfI	GANTC	2 cut(s)	218, 302
HpaII	CCGG	8 cut(s)	9, 222, 228, 356, 392, 406, 410, 419
HphI	GGTGA	2 cut(s)	67, 91
Hpy188I	TCNGA	1 cut(s)	239
Hpy99I	CGWCG	5 cut(s)	37, 40, 154, 218, 251
HpyAV	CCTTC	1 cut(s)	304
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	2 cut(s)	367, 385
HpyF10VI	GCNNNNNNNGC	8 cut(s)	70, 111, 205, 277, 281, 406, 419, 428
HpyF3I	CTNAG	2 cut(s)	93, 236
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	263
HspAI	GCGC	4 cut(s)	197, 225, 269, 275
KasI	GGCGCC	1 cut(s)	224
KroI	GCCGGC	2 cut(s)	8, 409
KroNI	GCCGGC	2 cut(s)	10, 411
KspI	CCGCGG	1 cut(s)	281
Kzo9I	GATC	3 cut(s)	171, 243, 462
LmnI	GCTCC	1 cut(s)	205
Lsp1109I	GCAGC	3 cut(s)	186, 351, 379
MaeII	ACGT	1 cut(s)	38
MalI	GATC	3 cut(s)	173, 245, 464
MbiI	CCGCTC	1 cut(s)	64
MboI	GATC	3 cut(s)	171, 243, 462
MboII	GAAGA	3 cut(s)	119, 362, 385
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	1 cut(s)	292
Mly113I	GGCGCC	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	4 cut(s)	73, 134, 138, 307
MroNI	GCCGGC	2 cut(s)	8, 409
MspA1I	CMGCKG	1 cut(s)	280
MspI	CCGG	8 cut(s)	9, 222, 228, 356, 392, 406, 410, 419
MspR9I	CCNGG	2 cut(s)	53, 332
Mva1269I	GAATGC	1 cut(s)	144
MvaI	CCWGG	2 cut(s)	53, 332
MvnI	CGCG	5 cut(s)	105, 269, 275, 280, 461
MwoI	GCNNNNNNNGC	8 cut(s)	70, 111, 205, 277, 281, 406, 419, 428
NaeI	GCCGGC	2 cut(s)	10, 411
NarI	GGCGCC	1 cut(s)	225
NdeII	GATC	3 cut(s)	171, 243, 462
NgoMIV	GCCGGC	2 cut(s)	8, 409
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	3 cut(s)	207, 226, 265
NspV	TTCGAA	1 cut(s)	290
PctI	GAATGC	1 cut(s)	144
PdiI	GCCGGC	2 cut(s)	10, 411
PfeI	GAWTC	1 cut(s)	302
PfoI	TCCNGGA	1 cut(s)	51
PinAI	ACCGGT	2 cut(s)	355, 391
PkrI	GCNGC	9 cut(s)	63, 116, 201, 258, 279, 286, 366, 369, 460
PleI	GAGTC	1 cut(s)	212
PluTI	GGCGCC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	212
Psp6I	CCWGG	2 cut(s)	51, 330
PspGI	CCWGG	2 cut(s)	51, 330
PspN4I	GGNNCC	3 cut(s)	207, 226, 265
PspPI	GGNCC	3 cut(s)	251, 264, 403
PstI	CTGCAG	2 cut(s)	369, 387
RigI	GGCCGGCC	1 cut(s)	413
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
Rsr2I	CGGWCCG	1 cut(s)	251
RsrII	CGGWCCG	1 cut(s)	251
SacII	CCGCGG	1 cut(s)	281
SatI	GCNGC	9 cut(s)	62, 115, 200, 257, 278, 285, 365, 368, 459
Sau3AI	GATC	3 cut(s)	171, 243, 462
Sau96I	GGNCC	3 cut(s)	251, 264, 403
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	53, 332
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	6 cut(s)	41, 75, 99, 126, 183, 446
SfcI	CTRYAG	2 cut(s)	365, 383
SfoI	GGCGCC	1 cut(s)	226
Sfr303I	CCGCGG	1 cut(s)	281
SfuI	TTCGAA	1 cut(s)	290
SgrBI	CCGCGG	1 cut(s)	281
SinI	GGWCC	3 cut(s)	251, 264, 403
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	292
SspDI	GGCGCC	1 cut(s)	224
StyD4I	CCNGG	2 cut(s)	51, 330
StyI	CCWWGG	1 cut(s)	440
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	2 cut(s)	290, 296
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	1 cut(s)	292
TauI	GCSGC	6 cut(s)	64, 117, 259, 280, 287, 461
TfiI	GAWTC	1 cut(s)	302
TscAI	CASTG	1 cut(s)	325
TseI	GCWGC	3 cut(s)	199, 364, 367
TspRI	CASTG	1 cut(s)	325
VpaK11BI	GGWCC	3 cut(s)	251, 264, 403
XapI	RAATTY	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.