Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003795

Physical Location & Seq

Genomic Coordinates Reverse (-)

33479235 .. 33480004

Gene Structure 770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0312700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGTGCAATATAATTTCAAGAAGATGACTGTTGTCCCCAGCGGGAAGGACTTCATTGATATTATCCTATCTCGCACCCAGCGGCAGACCCCAACTGTAGTCCACAAGGGTTATGCCATTAACCGCCTGCGTCAGTTCTATATGCGCAAAGTGAAATACACCCAGACAAATTTTCATGAGATGCTCTCGGCTATCATTGATGAATTTCCTAGGCTGGATGACATCCATCCTTTCTATGGCGATCTTCTACATGTTCTCTACAACAAGGACCATTACAAGCTCGCACTGGATCAAATCAATACTGCAAGGAACCTTATTTCCGAGATTGCTAAAGATTATGTCAAGTTATTGAAGTATGGCGATTCACTTTACCGATGCAAGAGTCTCAAGGTTGCTGCTTTTGGCCGTATGTTGTTAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007275 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

140

Amino Acids

16.52

Weight (kDa)

9.65

Isoelectric Point (pI)

28.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NOG1_N	PF17835	6 - 138	2.8e-48	NOG1 N-terminal helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14713 AT4G14713 AT4G14713 AT4G14713 AT4G14713 AT4G14720 AT4G14720
fragaria_vesca	FvH4_4g01120 FvH4_4g01120
malus_domestica	MD13G1199500.v1.1 MD16G1199200.v1.1
prunus_persica	Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1
pyrus_communis	pycom13g17310 pycom16g16780
rosa_chinensis	RchiOBHm_Chr4g0387691
rosa_laevigata	RLG00000010101
rosa_multiflora	Rmu_sc0006621.1_g000001 Rmu_sc0015409.1_g000001 Rmu_sc0028325.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334340
rosa_rugosa	Rorug03G0312500 Rorug03G0312600 Rorug03G0312700
rosa_samantha	Rh4AG017700 Rh4BG012600 Rh4CG018900 Rh4DG013500
rosa_wichuraiana	Rw4G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	146
AciI	CCGC	3 cut(s)	42, 82, 124
AclWI	GGATC	1 cut(s)	297
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	2 cut(s)	169, 203
AfiI	CCNNNNNNNGG	1 cut(s)	236
AflIII	ACRYGT	1 cut(s)	250
AgsI	TTSAA	2 cut(s)	19, 352
AloI	GAACNNNNNNTCC	2 cut(s)	302, 334
AluBI	AGCT	1 cut(s)	280
AluI	AGCT	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	1 cut(s)	297
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	2 cut(s)	169, 203
Asp700I	GAANNNNTTC	1 cut(s)	50
AspA2I	CCTAGG	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	268
AvrII	CCTAGG	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	1 cut(s)	234
BceAI	ACGGC	1 cut(s)	390
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	96
BisI	GCNGC	2 cut(s)	83, 396
BlnI	CCTAGG	1 cut(s)	209
BlsI	GCNGC	2 cut(s)	84, 397
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	311
BmsI	GCATC	2 cut(s)	171, 365
BoxI	GACNNNNGTC	1 cut(s)	32
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpuEI	CTTGAG	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	3 cut(s)	222, 223, 226
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	291
BseXI	GCAGC	1 cut(s)	382
BseYI	CCCAGC	2 cut(s)	38, 78
BshFI	GGCC	1 cut(s)	405
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	405
Bsp143I	GATC	2 cut(s)	241, 289
BspACI	CCGC	3 cut(s)	42, 82, 124
BspANI	GGCC	1 cut(s)	405
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	311
BspPI	GGATC	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	291
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	2 cut(s)	241, 289
BssT1I	CCWWGG	1 cut(s)	209
Bst4CI	ACNGT	2 cut(s)	31, 97
BstC8I	GCNNGC	2 cut(s)	128, 282
BstF5I	GGATG	3 cut(s)	222, 223, 226
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	2 cut(s)	244, 292
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	2 cut(s)	241, 289
BstNSI	RCATGY	1 cut(s)	254
BstPAI	GACNNNNGTC	1 cut(s)	32
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	405
BtsCI	GGATG	3 cut(s)	222, 223, 226
BtsIMutI	CAGTG	1 cut(s)	284
Cac8I	GCNNGC	2 cut(s)	128, 282
CciI	TCATGA	1 cut(s)	175
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	268
CseI	GACGC	1 cut(s)	119
CviAII	CATG	2 cut(s)	176, 251
CviJI	RGCY	4 cut(s)	191, 214, 280, 405
CviKI_1	RGCY	4 cut(s)	191, 214, 280, 405
DpnI	GATC	2 cut(s)	243, 291
DpnII	GATC	2 cut(s)	241, 289
EaeI	YGGCCR	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	2 cut(s)	179, 254
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	2 cut(s)	175, 250
FauI	CCCGC	1 cut(s)	35
Fnu4HI	GCNGC	2 cut(s)	83, 396
FokI	GGATG	3 cut(s)	209, 213, 230
Fsp4HI	GCNGC	2 cut(s)	83, 396
FspBI	CTAG	1 cut(s)	210
FspI	TGCGCA	1 cut(s)	146
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	2 cut(s)	83, 396
GsaI	CCCAGC	2 cut(s)	42, 82
HaeIII	GGCC	1 cut(s)	405
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	179, 254
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HinfI	GANTC	2 cut(s)	362, 382
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	2 cut(s)	19, 176
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	2 cut(s)	31, 97
HpyCH4V	TGCA	3 cut(s)	7, 305, 378
Hsp92II	CATG	2 cut(s)	179, 254
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	241, 289
LpnPI	CCDG	6 cut(s)	52, 92, 140, 176, 200, 272
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	2 cut(s)	171, 365
MaeI	CTAG	1 cut(s)	210
MalI	GATC	2 cut(s)	243, 291
MboI	GATC	2 cut(s)	241, 289
MboII	GAAGA	2 cut(s)	34, 236
MluCI	AATT	3 cut(s)	13, 169, 203
MlyI	GAGTC	1 cut(s)	391
MroXI	GAANNNNTTC	1 cut(s)	50
MseI	TTAA	1 cut(s)	120
MspA1I	CMGCKG	2 cut(s)	42, 82
NdeII	GATC	2 cut(s)	241, 289
NlaIII	CATG	2 cut(s)	179, 254
NlaIV	GGNNCC	1 cut(s)	311
NmeAIII	GCCGAG	1 cut(s)	167
NsbI	TGCGCA	1 cut(s)	146
NspI	RCATGY	1 cut(s)	254
PagI	TCATGA	1 cut(s)	175
PciI	ACATGT	1 cut(s)	250
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	2 cut(s)	84, 397
PleI	GAGTC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	390
PscI	ACATGT	1 cut(s)	250
PshAI	GACNNNNGTC	1 cut(s)	32
PspFI	CCCAGC	2 cut(s)	38, 78
PspN4I	GGNNCC	1 cut(s)	311
PspPI	GGNCC	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	2 cut(s)	83, 396
Sau3AI	GATC	2 cut(s)	241, 289
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	1 cut(s)	391
SetI	ASST	3 cut(s)	282, 315, 393
SfaNI	GCATC	2 cut(s)	171, 365
SfcI	CTRYAG	1 cut(s)	96
SinI	GGWCC	1 cut(s)	268
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	3 cut(s)	13, 169, 203
SsiI	CCGC	3 cut(s)	42, 82, 124
SspMI	CTAG	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	2 cut(s)	31, 97
TasI	AATT	3 cut(s)	13, 169, 203
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	1 cut(s)	291
TseI	GCWGC	1 cut(s)	395
TspDTI	ATGAA	3 cut(s)	43, 164, 216
TspRI	CASTG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	2 cut(s)	169, 203
XceI	RCATGY	1 cut(s)	254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	233
XmaJI	CCTAGG	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.