Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003795

Physical Location & Seq

Genomic Coordinates Forward (+)

33460883 .. 33490235

Gene Structure 29353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0312500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAGGAGGAATGTGTGTTACAGGAATGGAGCAGTTGCAGGGGCCCTTGACCCTTCCTCTTTGTCAACTCATCATATAAGCTCTTCAAGCAATAAGCCGGCATTAGGAAACATCCCAGAGTTTGTCAAGATAGTAGAAGTCGGTCCCAGGGATGGACTGCAGAATGAGAAGCAGATTATTCCTACTGATGTAAAGGTTCGGTTCATAGAAATGCTTGTTTCGTCCGGACTCACTGTTGTTGAGGCTACAAGTTTTGTCTCGCCCAAATGGATTCCACAGCTGGCAGATGCAAAGGATGTAATGGAAGCGATTCAGAATATGGGAGGTGCTAAATTTCCTGTTTTAACTCCTAATCTCAAAGGTTTTGAGGCGGCTGTTGCTGCTGGTGCAAAGGAAGTTGCCATCTTTGCCTCAGCGTCGGAGTCTTTCTCAAAATCAAATATAAATTGCAGTATTGAAGACAGTCTCAGACGTTACCGTGATGTTGCTGTTGCTGCAAAAAAGCTTTCTATTCCTGTTCGAGGATATATATCATGTGTTGTGGGGTGTCCAATAGAAGGAGCTGTAGCCCCATCTCAAGTAGCATATGTGGCCAAAGAACTTCTTGATATGGGTTGCTTTGACATTTCTCTTGGCGATACAATTGGTGTTGGTACTCCAGGTATCGTCGTTCCAATGCTTGAAGAGGTTATTGATGTGGTCCCCACTGAGAAGCTTGCTGTCCATTTCCACGACACTTATGGCCAAGCTCTTTCAAATATACTAGTATCTCTTCAGATGGGCATCAGCACAGTGGATTCATCAGTTTCTGGTCTTGGGGGTTGTCCATATGCTAAAGGTGCTTCTGGCAATGTTGCCACTGAGGATGTTGTGTACATGCTTAATGGACTTGGAGTGAAGACCAACATAGATCTTCAAAAGCTCATGTTGGCTGGGGACTTTATCTGCAAGCACTTGGGGCGCTCACCTGGTTCAAAGACAGCTGTTGCCTTGAGTAAAGTCCCTGCTCATACCTCTAAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007275 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

341

Amino Acids

35.83

Weight (kDa)

6.6

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMGL-like	PF00682	42 - 315	1.7e-56	HMGL-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14713 AT4G14713 AT4G14713 AT4G14713 AT4G14713 AT4G14720 AT4G14720
fragaria_vesca	FvH4_4g01120 FvH4_4g01120
malus_domestica	MD13G1199500.v1.1 MD16G1199200.v1.1
prunus_persica	Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1
pyrus_communis	pycom13g17310 pycom16g16780
rosa_chinensis	RchiOBHm_Chr4g0387691
rosa_laevigata	RLG00000010101
rosa_multiflora	Rmu_sc0006621.1_g000001 Rmu_sc0015409.1_g000001 Rmu_sc0028325.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334340
rosa_rugosa	Rorug03G0312500 Rorug03G0312600 Rorug03G0312700
rosa_samantha	Rh4AG017700 Rh4BG012600 Rh4CG018900 Rh4DG013500
rosa_wichuraiana	Rw4G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	224
AciI	CCGC	1 cut(s)	371
AcoI	YGGCCR	2 cut(s)	591, 742
AcsI	RAATTY	1 cut(s)	332
AcuI	CTGAAG	1 cut(s)	758
AfaI	GTAC	2 cut(s)	655, 875
AfiI	CCNNNNNNNGG	4 cut(s)	104, 152, 521, 557
AgsI	TTSAA	6 cut(s)	87, 458, 683, 756, 917, 975
AhlI	ACTAGT	1 cut(s)	763
AjnI	CCWGG	3 cut(s)	146, 658, 967
AluBI	AGCT	9 cut(s)	81, 280, 505, 563, 715, 749, 922, 983, 1021
AluI	AGCT	9 cut(s)	81, 280, 505, 563, 715, 749, 922, 983, 1021
Alw26I	GTCTC	2 cut(s)	262, 470
AlwNI	CAGNNNCTG	1 cut(s)	809
Aor13HI	TCCGGA	1 cut(s)	224
AoxI	GGCC	3 cut(s)	42, 591, 742
ApaI	GGGCCC	1 cut(s)	46
ApeKI	GCWGC	2 cut(s)	380, 494
ApoI	RAATTY	1 cut(s)	332
Asp700I	GAANNNNTTC	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	963
AspS9I	GGNCC	4 cut(s)	42, 43, 143, 700
AsuHPI	GGTGA	1 cut(s)	957
AvaII	GGWCC	2 cut(s)	143, 700
BaeGI	GKGCMC	1 cut(s)	46
BalI	TGGCCA	2 cut(s)	593, 744
BanII	GRGCYC	1 cut(s)	46
BbsI	GAAGAC	2 cut(s)	465, 905
BbvCI	CCTCAGC	1 cut(s)	412
BbvI	GCAGC	2 cut(s)	367, 481
BccI	CCATC	4 cut(s)	146, 410, 580, 772
BciT130I	CCWGG	3 cut(s)	148, 660, 969
BcoDI	GTCTC	2 cut(s)	262, 470
BcuI	ACTAGT	1 cut(s)	763
BfaI	CTAG	1 cut(s)	764
BfmI	CTRYAG	2 cut(s)	158, 564
BfoI	RGCGCY	1 cut(s)	964
BglII	AGATCT	1 cut(s)	910
BisI	GCNGC	3 cut(s)	372, 381, 495
BlsI	GCNGC	3 cut(s)	373, 382, 496
Bme1390I	CCNGG	3 cut(s)	148, 660, 969
Bme18I	GGWCC	2 cut(s)	143, 700
BmgT120I	GGNCC	4 cut(s)	42, 43, 143, 700
BmiI	GGNNCC	4 cut(s)	43, 44, 145, 702
BmrFI	CCNGG	3 cut(s)	148, 660, 969
BmsI	GCATC	2 cut(s)	277, 792
BpiI	GAAGAC	2 cut(s)	465, 905
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
BpmI	CTGGAG	1 cut(s)	642
Bpu10I	CCTNAGC	1 cut(s)	412
BpuEI	CTTGAG	2 cut(s)	561, 1012
BsaBI	GATNNNNATC	2 cut(s)	529, 782
BsaJI	CCNNGG	2 cut(s)	146, 147
BsaWI	WCCGGW	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 152, 521, 557
Bse118I	RCCGGY	1 cut(s)	97
Bse3DI	GCAATG	1 cut(s)	856
Bse8I	GATNNNNATC	2 cut(s)	529, 782
BseAI	TCCGGA	1 cut(s)	224
BseBI	CCWGG	3 cut(s)	148, 660, 969
BseDI	CCNNGG	2 cut(s)	146, 147
BseGI	GGATG	4 cut(s)	111, 157, 301, 871
BseJI	GATNNNNATC	2 cut(s)	529, 782
BseLI	CCNNNNNNNGG	4 cut(s)	104, 152, 521, 557
BseMI	GCAATG	1 cut(s)	856
BseMII	CTCAG	4 cut(s)	426, 481, 699, 852
BseRI	GAGGAG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	367, 481
BseYI	CCCAGC	1 cut(s)	932
BshFI	GGCC	3 cut(s)	44, 593, 744
BsiSI	CCGG	2 cut(s)	98, 225
BslFI	GGGAC	4 cut(s)	129, 686, 950, 986
BslI	CCNNNNNNNGG	4 cut(s)	104, 152, 521, 557
BsmAI	GTCTC	2 cut(s)	262, 470
BsmFI	GGGAC	4 cut(s)	129, 686, 950, 986
BsnI	GGCC	3 cut(s)	44, 593, 744
Bsp120I	GGGCCC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp13I	TCCGGA	1 cut(s)	224
Bsp1407I	TGTACA	1 cut(s)	873
Bsp143I	GATC	1 cut(s)	910
BspACI	CCGC	1 cut(s)	371
BspANI	GGCC	3 cut(s)	44, 593, 744
BspCNI	CTCAG	4 cut(s)	425, 480, 700, 853
BspEI	TCCGGA	1 cut(s)	224
BspLI	GGNNCC	4 cut(s)	43, 44, 145, 702
BspMAI	CTGCAG	1 cut(s)	162
BspQI	GCTCTTC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	856
BsrFI	RCCGGY	1 cut(s)	97
BsrGI	TGTACA	1 cut(s)	873
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	146, 147
BssMI	GATC	1 cut(s)	910
Bst2UI	CCWGG	3 cut(s)	148, 660, 969
Bst4CI	ACNGT	4 cut(s)	235, 464, 479, 793
Bst6I	CTCTTC	3 cut(s)	88, 678, 777
BstAUI	TGTACA	1 cut(s)	873
BstC8I	GCNNGC	4 cut(s)	99, 282, 717, 950
BstDEI	CTNAG	5 cut(s)	412, 467, 708, 861, 1017
BstENI	CCTNNNNNAGG	1 cut(s)	519
BstF5I	GGATG	4 cut(s)	111, 157, 301, 871
BstH2I	RGCGCY	1 cut(s)	964
BstHHI	GCGC	1 cut(s)	963
BstKTI	GATC	1 cut(s)	913
BstMAI	GTCTC	2 cut(s)	262, 470
BstMBI	GATC	1 cut(s)	910
BstMWI	GCNNNNNNNGC	9 cut(s)	87, 377, 380, 386, 407, 494, 590, 839, 958
BstNI	CCWGG	3 cut(s)	148, 660, 969
BstNSI	RCATGY	1 cut(s)	880
BstSCI	CCNGG	3 cut(s)	146, 658, 967
BstSFI	CTRYAG	2 cut(s)	158, 564
BstSLI	GKGCMC	1 cut(s)	46
BstV1I	GCAGC	2 cut(s)	367, 481
BstV2I	GAAGAC	2 cut(s)	465, 905
BstX2I	RGATCY	1 cut(s)	910
BstYI	RGATCY	1 cut(s)	910
BsuRI	GGCC	3 cut(s)	44, 593, 744
BtsCI	GGATG	4 cut(s)	111, 157, 301, 871
BtsIMutI	CAGTG	4 cut(s)	231, 705, 798, 858
Cac8I	GCNNGC	4 cut(s)	99, 282, 717, 950
CaiI	CAGNNNCTG	1 cut(s)	809
CfoI	GCGC	1 cut(s)	963
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	4 cut(s)	42, 43, 143, 700
CseI	GACGC	1 cut(s)	405
CsiI	ACCWGGT	1 cut(s)	967
Csp6I	GTAC	2 cut(s)	654, 874
CviAII	CATG	3 cut(s)	534, 877, 925
CviQI	GTAC	2 cut(s)	654, 874
DdeI	CTNAG	5 cut(s)	412, 467, 708, 861, 1017
DpnI	GATC	1 cut(s)	912
DpnII	GATC	1 cut(s)	910
EaeI	YGGCCR	2 cut(s)	591, 742
Eam1104I	CTCTTC	3 cut(s)	88, 678, 777
EarI	CTCTTC	3 cut(s)	88, 678, 777
Eco24I	GRGCYC	1 cut(s)	46
Eco47I	GGWCC	2 cut(s)	143, 700
Eco57I	CTGAAG	1 cut(s)	758
EcoNI	CCTNNNNNAGG	1 cut(s)	519
EcoO109I	RGGNCCY	2 cut(s)	42, 43
EcoRII	CCWGG	3 cut(s)	146, 658, 967
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	3 cut(s)	537, 880, 928
FalI	AAGNNNNNCTT	2 cut(s)	588, 620
FaqI	GGGAC	4 cut(s)	129, 686, 950, 986
FatI	CATG	3 cut(s)	533, 876, 924
FauNDI	CATATG	2 cut(s)	586, 829
Fnu4HI	GCNGC	3 cut(s)	372, 381, 495
FokI	GGATG	4 cut(s)	98, 164, 308, 878
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	3 cut(s)	372, 381, 495
FspBI	CTAG	1 cut(s)	764
GlaI	GCGC	1 cut(s)	962
GluI	GCNGC	3 cut(s)	372, 381, 495
GsaI	CCCAGC	1 cut(s)	936
GsuI	CTGGAG	1 cut(s)	642
HaeII	RGCGCY	1 cut(s)	964
HaeIII	GGCC	3 cut(s)	44, 593, 744
HapII	CCGG	2 cut(s)	98, 225
HgaI	GACGC	1 cut(s)	405
HhaI	GCGC	1 cut(s)	963
Hin1II	CATG	3 cut(s)	537, 880, 928
Hin6I	GCGC	1 cut(s)	961
HinP1I	GCGC	1 cut(s)	961
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HindIII	AAGCTT	2 cut(s)	503, 713
HinfI	GANTC	5 cut(s)	228, 271, 310, 422, 797
HpaII	CCGG	2 cut(s)	98, 225
HphI	GGTGA	1 cut(s)	957
Hpy166II	GTNNAC	2 cut(s)	66, 874
Hpy188I	TCNGA	4 cut(s)	315, 421, 470, 777
Hpy188III	TCNNGA	3 cut(s)	127, 225, 605
Hpy8I	GTNNAC	2 cut(s)	66, 874
Hpy99I	CGWCG	2 cut(s)	421, 671
HpyAV	CCTTC	2 cut(s)	63, 551
HpyCH4III	ACNGT	4 cut(s)	235, 464, 479, 793
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	7 cut(s)	38, 160, 290, 389, 450, 497, 948
HpyF10VI	GCNNNNNNNGC	9 cut(s)	87, 377, 380, 386, 407, 494, 590, 839, 958
HpyF3I	CTNAG	5 cut(s)	412, 467, 708, 861, 1017
HpySE526I	ACGT	1 cut(s)	472
Hsp92II	CATG	3 cut(s)	537, 880, 928
HspAI	GCGC	1 cut(s)	961
Kpn2I	TCCGGA	1 cut(s)	224
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	910
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	2 cut(s)	29, 560
Lsp1109I	GCAGC	2 cut(s)	367, 481
LweI	GCATC	2 cut(s)	277, 792
MabI	ACCWGGT	1 cut(s)	967
MaeI	CTAG	1 cut(s)	764
MaeII	ACGT	1 cut(s)	472
MaeIII	GTNAC	2 cut(s)	17, 473
MalI	GATC	1 cut(s)	912
MboI	GATC	1 cut(s)	910
MboII	GAAGA	6 cut(s)	75, 470, 695, 764, 905, 910
MfeI	CAATTG	1 cut(s)	642
MflI	RGATCY	1 cut(s)	910
MhlI	GDGCHC	1 cut(s)	46
MlsI	TGGCCA	2 cut(s)	593, 744
MluCI	AATT	3 cut(s)	332, 445, 642
MluNI	TGGCCA	2 cut(s)	593, 744
MlyI	GAGTC	2 cut(s)	222, 431
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	9 cut(s)	67, 235, 317, 361, 421, 515, 679, 856, 1024
Mox20I	TGGCCA	2 cut(s)	593, 744
MroI	TCCGGA	1 cut(s)	224
MroNI	GCCGGC	1 cut(s)	97
MroXI	GAANNNNTTC	1 cut(s)	309
MscI	TGGCCA	2 cut(s)	593, 744
MseI	TTAA	2 cut(s)	344, 882
MslI	CAYNNNNRTG	1 cut(s)	209
Msp20I	TGGCCA	2 cut(s)	593, 744
MspA1I	CMGCKG	2 cut(s)	280, 983
MspI	CCGG	2 cut(s)	98, 225
MspR9I	CCNGG	3 cut(s)	148, 660, 969
MunI	CAATTG	1 cut(s)	642
MvaI	CCWGG	3 cut(s)	148, 660, 969
MwoI	GCNNNNNNNGC	9 cut(s)	87, 377, 380, 386, 407, 494, 590, 839, 958
NaeI	GCCGGC	1 cut(s)	99
NdeI	CATATG	2 cut(s)	586, 829
NdeII	GATC	1 cut(s)	910
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	3 cut(s)	537, 880, 928
NlaIV	GGNNCC	4 cut(s)	43, 44, 145, 702
NspI	RCATGY	1 cut(s)	880
PasI	CCCWGGG	1 cut(s)	147
PciSI	GCTCTTC	1 cut(s)	88
PdiI	GCCGGC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	3 cut(s)	271, 310, 797
PkrI	GCNGC	3 cut(s)	373, 382, 496
PleI	GAGTC	2 cut(s)	222, 430
PpsI	GAGTC	2 cut(s)	222, 430
Psp6I	CCWGG	3 cut(s)	146, 658, 967
PspFI	CCCAGC	1 cut(s)	932
PspGI	CCWGG	3 cut(s)	146, 658, 967
PspN4I	GGNNCC	4 cut(s)	43, 44, 145, 702
PspOMI	GGGCCC	1 cut(s)	42
PspPI	GGNCC	4 cut(s)	42, 43, 143, 700
PstI	CTGCAG	1 cut(s)	162
PstNI	CAGNNNCTG	1 cut(s)	809
PsuI	RGATCY	1 cut(s)	910
PvuII	CAGCTG	2 cut(s)	280, 983
RsaI	GTAC	2 cut(s)	655, 875
RsaNI	GTAC	2 cut(s)	654, 874
RseI	CAYNNNNRTG	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	344, 882
SatI	GCNGC	3 cut(s)	372, 381, 495
Sau3AI	GATC	1 cut(s)	910
Sau96I	GGNCC	4 cut(s)	42, 43, 143, 700
SchI	GAGTC	2 cut(s)	222, 431
ScrFI	CCNGG	3 cut(s)	148, 660, 969
SduI	GDGCHC	1 cut(s)	46
SexAI	ACCWGGT	1 cut(s)	967
SfaNI	GCATC	2 cut(s)	277, 792
SfcI	CTRYAG	2 cut(s)	158, 564
SinI	GGWCC	2 cut(s)	143, 700
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	2 cut(s)	576, 991
SmoI	CTYRAG	2 cut(s)	576, 991
SpeI	ACTAGT	1 cut(s)	763
Sse9I	AATT	3 cut(s)	332, 445, 642
SsiI	CCGC	1 cut(s)	371
SspMI	CTAG	1 cut(s)	764
StyD4I	CCNGG	3 cut(s)	146, 658, 967
TaaI	ACNGT	4 cut(s)	235, 464, 479, 793
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	1 cut(s)	520
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	3 cut(s)	332, 445, 642
TatI	WGTACW	1 cut(s)	873
TauI	GCSGC	1 cut(s)	374
TfiI	GAWTC	3 cut(s)	271, 310, 797
Tru1I	TTAA	2 cut(s)	344, 882
Tru9I	TTAA	2 cut(s)	344, 882
TscAI	CASTG	4 cut(s)	238, 712, 798, 865
TseI	GCWGC	2 cut(s)	380, 494
TspDTI	ATGAA	2 cut(s)	193, 789
TspRI	CASTG	4 cut(s)	238, 712, 798, 865
VpaK11BI	GGWCC	2 cut(s)	143, 700
XagI	CCTNNNNNAGG	1 cut(s)	519
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	1 cut(s)	880
XcmI	CCANNNNNNNNNTGG	1 cut(s)	737
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.