RchiOBHm_Chr4g0387691

Protein TIFY 4B-like isoform X1

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
2914638 .. 2919372
4735 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36098

Sequence Viewer

Length: 1032 bp
ATGAGCGCCGGCACTACTACAACCACTACAACGACGACGTTTCGCACCATCCTCGAGAAGCCGCTCAACCAGCTCACCGAGGATGACATTTCTCAGCTCACCCGCGAAGACTGCCGCAAGTACCTCAAAGAAAAAGGAATGCGGAGGCCGTCGTGGAACAAATCGCAGGCGATCCAGCAGGTTATTTCACTCAAGGCGCTGCTGGAGCCCAACGACGACTCCGGCGCCGGAGTTCTCAGAAAGATCGTCGGTCCGCCGCATGGGACCGCGCCCGCGCCTCGGGCGGCTTCGAATTCGACTGATTCAACTAAGGAGGCCAGTGCCGATGTCCAGGGTTGTAAGTCGGCCGAAGAACCGGTGGTGCTGCAGCAGAAGAAAGAACCGCAGAAACCGGTTCGGCAGGACCGACCGGCCGAACCGGCTGTAAAAGCCATTACTCCAAGCAAAAATCAGTGCACAACCGATGCATCAGTTAGGCAAATGACAATTTTCTACTGCGGCAAGGTGAATGTGTATGATGAAGTGCCACCAGATAAGGCACGAACAATCATGCACCTTGCAGCAAGGCCCAACCATTTGCCTCTGGACAATATTGGAACTGCTGCAGCTAGGTCCTTGCGATGCCAATTTCAGACTGCAGGTGACAAAGATGGCCCTTTCCCACCTAATGCCACAATCCCTCAGGCTATGCAAACAGATAGGATTGCAGACTATACTCAGCTGTACTGGGATAAAGGGAACAACACTCGTGATCCTGAGGGTCAGGCAAGTAGAAAAGTCTCGTTGCAGAGATACCGTGAAAAGCGAAAAGACAGGGAACGAGTAAAGATTAAGAAAAATATGGGATCAACTTCTAGCTTGGAGGTTTATTTGAATCATCAACTCAGGAGACATACCTCAAATGGTAATTCAAGTAGGAGTAGCACAAGCTCTCCACCCCAGCAACCTGGGATGCTACAAGCAGCTGACAATCAGCCCAAGATTCGCTGTCTTCCTGTTGACCTAAATGAAAATGATATCGTGGAATGCTGA

Protein Analysis

343

Amino Acids

38.05

Weight (kDa)

9.37

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 159 - 188 6e-16 tify domain
Jas_motif PF09425 256 - 272 8.8e-06 Jas motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 629
Acc36I ACCTGC 2 cut(s) 169, 629
AccB1I GGYRCC 1 cut(s) 224
AccBSI CCGCTC 1 cut(s) 64
AccII CGCG 3 cut(s) 105, 269, 275
AclWI GGATC 3 cut(s) 166, 746, 853
AcoI YGGCCR 2 cut(s) 345, 411
AcsI RAATTY 1 cut(s) 292
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 2 cut(s) 122, 725
AfiI CCNNNNNNNGG 2 cut(s) 260, 279
AgeI ACCGGT 2 cut(s) 355, 391
AgsI TTSAA 3 cut(s) 306, 874, 912
AjnI CCWGG 2 cut(s) 330, 946
AluBI AGCT 7 cut(s) 73, 97, 608, 721, 858, 930, 965
AluI AGCT 7 cut(s) 73, 97, 608, 721, 858, 930, 965
Alw21I GWGCWC 1 cut(s) 458
Alw26I GTCTC 2 cut(s) 784, 883
Alw44I GTGCAC 1 cut(s) 454
AlwI GGATC 3 cut(s) 166, 746, 853
Ama87I CYCGRG 2 cut(s) 53, 279
AoxI GGCC 6 cut(s) 146, 315, 345, 411, 566, 652
ApaLI GTGCAC 1 cut(s) 454
ApeKI GCWGC 7 cut(s) 199, 364, 367, 560, 602, 605, 962
ApoI RAATTY 1 cut(s) 292
AsiGI ACCGGT 2 cut(s) 355, 391
AspLEI GCGC 5 cut(s) 8, 199, 227, 271, 277
AspS9I GGNCC 6 cut(s) 251, 264, 403, 567, 612, 653
AsuHPI GGTGA 4 cut(s) 67, 91, 517, 653
AsuII TTCGAA 1 cut(s) 290
AvaI CYCGRG 2 cut(s) 53, 279
AvaII GGWCC 4 cut(s) 251, 264, 403, 612
AxyI CCTNAGG 2 cut(s) 681, 756
BaeGI GKGCMC 1 cut(s) 458
BanI GGYRCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 210
BauI CACGAG 1 cut(s) 747
BbsI GAAGAC 2 cut(s) 114, 983
Bbv12I GWGCWC 1 cut(s) 458
BbvI GCAGC 7 cut(s) 186, 351, 379, 572, 589, 617, 974
BccI CCATC 2 cut(s) 56, 644
BceAI ACGGC 1 cut(s) 133
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciT130I CCWGG 2 cut(s) 332, 948
BcoDI GTCTC 2 cut(s) 784, 883
BfaI CTAG 2 cut(s) 609, 855
BfmI CTRYAG 3 cut(s) 365, 603, 636
BfoI RGCGCY 3 cut(s) 9, 200, 228
BfuAI ACCTGC 2 cut(s) 169, 629
BglI GCCNNNNNGGC 1 cut(s) 419
Bme1390I CCNGG 2 cut(s) 332, 948
Bme18I GGWCC 4 cut(s) 251, 264, 403, 612
BmeT110I CYCGRG 2 cut(s) 53, 279
BmgT120I GGNCC 6 cut(s) 251, 264, 403, 567, 612, 653
BmiI GGNNCC 3 cut(s) 207, 226, 265
BmrFI CCNGG 2 cut(s) 332, 948
BmrI ACTGGG 1 cut(s) 736
BmsI GCATC 4 cut(s) 454, 476, 611, 942
BmuI ACTGGG 1 cut(s) 736
BpiI GAAGAC 2 cut(s) 114, 983
BpmI CTGGAG 1 cut(s) 224
Bpu14I TTCGAA 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 176
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 4 cut(s) 78, 278, 331, 947
BsaWI WCCGGW 2 cut(s) 355, 391
BsaXI ACNNNNNCTCC 4 cut(s) 203, 233, 916, 946
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 279
Bse118I RCCGGY 5 cut(s) 8, 355, 391, 409, 418
Bse1I ACTGG 2 cut(s) 318, 731
Bse21I CCTNAGG 2 cut(s) 681, 756
BseBI CCWGG 2 cut(s) 332, 948
BseDI CCNNGG 4 cut(s) 78, 278, 331, 947
BseGI GGATG 3 cut(s) 48, 88, 957
BseLI CCNNNNNNNGG 2 cut(s) 260, 279
BseMII CTCAG 6 cut(s) 107, 250, 695, 731, 747, 898
BseNI ACTGG 2 cut(s) 318, 731
BseSI GKGCMC 1 cut(s) 458
BseX3I CGGCCG 2 cut(s) 345, 411
BseXI GCAGC 7 cut(s) 186, 351, 379, 572, 589, 617, 974
BseYI CCCAGC 1 cut(s) 939
Bsh1236I CGCG 3 cut(s) 105, 269, 275
Bsh1285I CGRYCG 3 cut(s) 348, 410, 414
BshFI GGCC 6 cut(s) 148, 317, 347, 413, 568, 654
BshNI GGYRCC 1 cut(s) 224
BshTI ACCGGT 2 cut(s) 355, 391
BsiEI CGRYCG 3 cut(s) 348, 410, 414
BsiHKAI GWGCWC 1 cut(s) 458
BsiHKCI CYCGRG 2 cut(s) 53, 279
BsiSI CCGG 7 cut(s) 9, 222, 228, 356, 392, 410, 419
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 2 cut(s) 260, 279
BsmAI GTCTC 2 cut(s) 784, 883
BsmFI GGGAC 1 cut(s) 277
BsmI GAATGC 2 cut(s) 144, 1031
BsnI GGCC 6 cut(s) 148, 317, 347, 413, 568, 654
BsoBI CYCGRG 2 cut(s) 53, 279
Bsp119I TTCGAA 1 cut(s) 290
Bsp1286I GDGCHC 2 cut(s) 210, 458
Bsp143I GATC 4 cut(s) 171, 243, 751, 845
BspANI GGCC 6 cut(s) 148, 317, 347, 413, 568, 654
BspCNI CTCAG 6 cut(s) 106, 249, 694, 730, 748, 897
BspFNI CGCG 3 cut(s) 105, 269, 275
BspLI GGNNCC 3 cut(s) 207, 226, 265
BspMAI CTGCAG 3 cut(s) 369, 607, 640
BspMI ACCTGC 2 cut(s) 169, 629
BspPI GGATC 3 cut(s) 166, 746, 853
BspT104I TTCGAA 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 224
BsrBI CCGCTC 1 cut(s) 64
BsrFI RCCGGY 5 cut(s) 8, 355, 391, 409, 418
BsrI ACTGG 2 cut(s) 318, 731
BssAI RCCGGY 5 cut(s) 8, 355, 391, 409, 418
BssECI CCNNGG 4 cut(s) 78, 278, 331, 947
BssMI GATC 4 cut(s) 171, 243, 751, 845
BssNI GRCGYC 1 cut(s) 225
BssSI CACGAG 1 cut(s) 747
Bst2BI CACGAG 1 cut(s) 747
Bst2UI CCWGG 2 cut(s) 332, 948
Bst4CI ACNGT 1 cut(s) 797
BstACI GRCGYC 1 cut(s) 225
BstBI TTCGAA 1 cut(s) 290
BstC8I GCNNGC 3 cut(s) 10, 168, 273
BstDEI CTNAG 7 cut(s) 93, 236, 309, 681, 717, 756, 884
BstF5I GGATG 3 cut(s) 48, 88, 957
BstFNI CGCG 3 cut(s) 105, 269, 275
BstH2I RGCGCY 3 cut(s) 9, 200, 228
BstHHI GCGC 5 cut(s) 8, 199, 227, 271, 277
BstKTI GATC 4 cut(s) 174, 246, 754, 848
BstMAI GTCTC 2 cut(s) 784, 883
BstMBI GATC 4 cut(s) 171, 243, 751, 845
BstMCI CGRYCG 3 cut(s) 348, 410, 414
BstMWI GCNNNNNNNGC 6 cut(s) 70, 111, 205, 281, 419, 428
BstNI CCWGG 2 cut(s) 332, 948
BstSCI CCNGG 2 cut(s) 330, 946
BstSFI CTRYAG 3 cut(s) 365, 603, 636
BstSLI GKGCMC 1 cut(s) 458
BstUI CGCG 3 cut(s) 105, 269, 275
BstV1I GCAGC 7 cut(s) 186, 351, 379, 572, 589, 617, 974
BstV2I GAAGAC 2 cut(s) 114, 983
BstXI CCANNNNNNTGG 1 cut(s) 947
BstZI CGGCCG 2 cut(s) 345, 411
Bsu36I CCTNAGG 2 cut(s) 681, 756
BsuRI GGCC 6 cut(s) 148, 317, 347, 413, 568, 654
BtgZI GCGATG 1 cut(s) 634
BtsCI GGATG 3 cut(s) 48, 88, 957
BtsIMutI CAGTG 2 cut(s) 325, 458
BveI ACCTGC 2 cut(s) 169, 629
Cac8I GCNNGC 3 cut(s) 10, 168, 273
CfoI GCGC 5 cut(s) 8, 199, 227, 271, 277
Cfr10I RCCGGY 5 cut(s) 8, 355, 391, 409, 418
Cfr13I GGNCC 6 cut(s) 251, 264, 403, 567, 612, 653
CpoI CGGWCCG 1 cut(s) 251
Csp6I GTAC 2 cut(s) 121, 724
CspAI ACCGGT 2 cut(s) 355, 391
CspI CGGWCCG 1 cut(s) 251
CviAII CATG 2 cut(s) 260, 550
CviQI GTAC 2 cut(s) 121, 724
DdeI CTNAG 7 cut(s) 93, 236, 309, 681, 717, 756, 884
DinI GGCGCC 1 cut(s) 226
DpnI GATC 4 cut(s) 173, 245, 753, 847
DpnII GATC 4 cut(s) 171, 243, 751, 845
EaeI YGGCCR 2 cut(s) 345, 411
EagI CGGCCG 2 cut(s) 345, 411
EciI GGCGGA 1 cut(s) 243
EclXI CGGCCG 2 cut(s) 345, 411
Eco24I GRGCYC 1 cut(s) 210
Eco32I GATATC 1 cut(s) 1018
Eco47I GGWCC 4 cut(s) 251, 264, 403, 612
Eco52I CGGCCG 2 cut(s) 345, 411
Eco81I CCTNAGG 2 cut(s) 681, 756
Eco88I CYCGRG 2 cut(s) 53, 279
EcoO109I RGGNCCY 1 cut(s) 612
EcoRI GAATTC 1 cut(s) 292
EcoRII CCWGG 2 cut(s) 330, 946
EcoRV GATATC 1 cut(s) 1018
EcoT22I ATGCAT 1 cut(s) 469
EcoT38I GRGCYC 1 cut(s) 210
EgeI GGCGCC 1 cut(s) 226
EheI GGCGCC 1 cut(s) 226
FaeI CATG 2 cut(s) 263, 553
FaiI YATR 7 cut(s) 261, 516, 551, 689, 714, 842, 894
FaqI GGGAC 1 cut(s) 277
FatI CATG 2 cut(s) 259, 549
FauI CCCGC 2 cut(s) 110, 280
FokI GGATG 3 cut(s) 35, 95, 964
FriOI GRGCYC 1 cut(s) 210
FspBI CTAG 2 cut(s) 609, 855
GlaI GCGC 5 cut(s) 7, 198, 226, 270, 276
GsaI CCCAGC 1 cut(s) 943
GsuI CTGGAG 1 cut(s) 224
HaeII RGCGCY 3 cut(s) 9, 200, 228
HaeIII GGCC 6 cut(s) 148, 317, 347, 413, 568, 654
HapII CCGG 7 cut(s) 9, 222, 228, 356, 392, 410, 419
HhaI GCGC 5 cut(s) 8, 199, 227, 271, 277
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 2 cut(s) 263, 553
Hin6I GCGC 5 cut(s) 6, 197, 225, 269, 275
HinP1I GCGC 5 cut(s) 6, 197, 225, 269, 275
HincII GTYRAC 1 cut(s) 1000
HindII GTYRAC 1 cut(s) 1000
HinfI GANTC 4 cut(s) 218, 302, 874, 982
HpaII CCGG 7 cut(s) 9, 222, 228, 356, 392, 410, 419
HphI GGTGA 4 cut(s) 67, 91, 517, 653
Hpy166II GTNNAC 2 cut(s) 456, 1000
Hpy188I TCNGA 2 cut(s) 239, 633
Hpy188III TCNNGA 5 cut(s) 55, 584, 749, 755, 886
Hpy8I GTNNAC 2 cut(s) 456, 1000
Hpy99I CGWCG 5 cut(s) 37, 40, 154, 218, 251
HpyCH4III ACNGT 1 cut(s) 797
HpyCH4IV ACGT 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 6 cut(s) 70, 111, 205, 281, 419, 428
HpyF3I CTNAG 7 cut(s) 93, 236, 309, 681, 717, 756, 884
HpySE526I ACGT 1 cut(s) 38
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 2 cut(s) 263, 553
HspAI GCGC 5 cut(s) 6, 197, 225, 269, 275
KasI GGCGCC 1 cut(s) 224
KroI GCCGGC 1 cut(s) 8
KroNI GCCGGC 1 cut(s) 10
Kzo9I GATC 4 cut(s) 171, 243, 751, 845
LmnI GCTCC 1 cut(s) 205
Lsp1109I GCAGC 7 cut(s) 186, 351, 379, 572, 589, 617, 974
LweI GCATC 4 cut(s) 454, 476, 611, 942
MaeI CTAG 2 cut(s) 609, 855
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 641
MalI GATC 4 cut(s) 173, 245, 753, 847
MbiI CCGCTC 1 cut(s) 64
MboI GATC 4 cut(s) 171, 243, 751, 845
MboII GAAGA 4 cut(s) 119, 362, 385, 983
MhlI GDGCHC 2 cut(s) 210, 458
MluCI AATT 4 cut(s) 292, 486, 626, 907
Mly113I GGCGCC 1 cut(s) 225
MlyI GAGTC 1 cut(s) 212
Mph1103I ATGCAT 1 cut(s) 469
MroNI GCCGGC 1 cut(s) 8
MseI TTAA 1 cut(s) 831
MspA1I CMGCKG 2 cut(s) 721, 965
MspI CCGG 7 cut(s) 9, 222, 228, 356, 392, 410, 419
MspR9I CCNGG 2 cut(s) 332, 948
Mva1269I GAATGC 2 cut(s) 144, 1031
MvaI CCWGG 2 cut(s) 332, 948
MvnI CGCG 3 cut(s) 105, 269, 275
MwoI GCNNNNNNNGC 6 cut(s) 70, 111, 205, 281, 419, 428
NaeI GCCGGC 1 cut(s) 10
NarI GGCGCC 1 cut(s) 225
NdeII GATC 4 cut(s) 171, 243, 751, 845
NgoMIV GCCGGC 1 cut(s) 8
NlaIII CATG 2 cut(s) 263, 553
NlaIV GGNNCC 3 cut(s) 207, 226, 265
NmuCI GTSAC 1 cut(s) 641
NsiI ATGCAT 1 cut(s) 469
NspV TTCGAA 1 cut(s) 290
PaeR7I CTCGAG 1 cut(s) 53
PaqCI CACCTGC 1 cut(s) 629
PcsI WCGNNNNNNNCGW 1 cut(s) 403
PctI GAATGC 2 cut(s) 144, 1031
PdiI GCCGGC 1 cut(s) 10
PfeI GAWTC 3 cut(s) 302, 874, 982
PinAI ACCGGT 2 cut(s) 355, 391
PleI GAGTC 1 cut(s) 212
PluTI GGCGCC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 212
PpuMI RGGWCCY 1 cut(s) 612
Psp5II RGGWCCY 1 cut(s) 612
Psp6I CCWGG 2 cut(s) 330, 946
PspFI CCCAGC 1 cut(s) 939
PspGI CCWGG 2 cut(s) 330, 946
PspN4I GGNNCC 3 cut(s) 207, 226, 265
PspPI GGNCC 6 cut(s) 251, 264, 403, 567, 612, 653
PspPPI RGGWCCY 1 cut(s) 612
PstI CTGCAG 3 cut(s) 369, 607, 640
PvuII CAGCTG 2 cut(s) 721, 965
RsaI GTAC 2 cut(s) 122, 725
RsaNI GTAC 2 cut(s) 121, 724
Rsr2I CGGWCCG 1 cut(s) 251
RsrII CGGWCCG 1 cut(s) 251
SaqAI TTAA 1 cut(s) 831
Sau3AI GATC 4 cut(s) 171, 243, 751, 845
Sau96I GGNCC 6 cut(s) 251, 264, 403, 567, 612, 653
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 2 cut(s) 332, 948
SduI GDGCHC 2 cut(s) 210, 458
SfaNI GCATC 4 cut(s) 454, 476, 611, 942
SfcI CTRYAG 3 cut(s) 365, 603, 636
SfoI GGCGCC 1 cut(s) 226
Sfr274I CTCGAG 1 cut(s) 53
SfuI TTCGAA 1 cut(s) 290
SinI GGWCC 4 cut(s) 251, 264, 403, 612
SlaI CTCGAG 1 cut(s) 53
SmlI CTYRAG 2 cut(s) 53, 191
SmoI CTYRAG 2 cut(s) 53, 191
Sse9I AATT 4 cut(s) 292, 486, 626, 907
SspDI GGCGCC 1 cut(s) 224
SspI AATATT 1 cut(s) 592
SspMI CTAG 2 cut(s) 609, 855
StyD4I CCNGG 2 cut(s) 330, 946
TaaI ACNGT 1 cut(s) 797
TaiI ACGT 1 cut(s) 41
TaqI TCGA 3 cut(s) 54, 290, 296
TaqII GACCGA 2 cut(s) 239, 420
TasI AATT 4 cut(s) 292, 486, 626, 907
TatI WGTACW 1 cut(s) 723
TauI GCSGC 5 cut(s) 64, 117, 259, 287, 501
TfiI GAWTC 3 cut(s) 302, 874, 982
Tru1I TTAA 1 cut(s) 831
Tru9I TTAA 1 cut(s) 831
TscAI CASTG 2 cut(s) 325, 458
TseFI GTSAC 1 cut(s) 641
TseI GCWGC 7 cut(s) 199, 364, 367, 560, 602, 605, 962
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 2 cut(s) 534, 1023
TspRI CASTG 2 cut(s) 325, 458
VneI GTGCAC 1 cut(s) 454
VpaK11BI GGWCC 4 cut(s) 251, 264, 403, 612
XapI RAATTY 1 cut(s) 292
XhoI CTCGAG 1 cut(s) 53
XspI CTAG 2 cut(s) 609, 855
Zsp2I ATGCAT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.