FvH4_4g02690

Zinc knuckle (CCHC-type) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001074
Physical Location & Seq
Reverse (-)
2446594 .. 2453920
7327 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02690.t12

Sequence Viewer

Length: 3141 bp
ATGGATGAGAACAATGAGAACATAGAGCCAGTGACTGATTTGGGGCTTGCTCTGAGTTATTCTAATCAGTGTATTCAGAGCAGTCTGAACAGTGATTCAGGTGCAGGTGCAAATGCAGGTTCAGTGTTAGGCATGACATTTGTGGCCACCGAGCCCCTGTCAGAGTTAGTCTGGTCTACAGATAAAGGTCCAAGCAATGTGACTCTTTCACCACAGAGCACTACAGGTGGGAGGTCTGCTGCTGAGAAGCCTATAGATGAAGATAATTTTATAACCTCAGATACATCATTTCGTGTGAAGAGTGAAGCTGCTGGTAAAGAAGCTTTGACTACATCACCAACAAGTGATGCTGGAATCATTCTGGCATGTGGGTCGAGCCATGAATATGAGACAGAAACCGTTGCTAACGTGGAGGAAGTGAAAACATCTGGTGAAGTATCTATTTTGCATAAACAGGTGGACACTTGCAGTCCAATAAATTTTGAAGTAGATGAAATACCTGAGATGCCTGAAACAGGAGAAATTTTATTTACAACATTGCCAGGTGATGTTGACAGAGAAAGGGATAATATGATGATGAAATCAGATCAATTAATACCTTTTGTGAGGCAAAGTGAACCATCATTGGGGGAACCTGTCAGTGAAAACATGCATGCTGATGATGGAAATCTGAATAGAGAAATGGATTTTATTTTGACCTCCAAAGCCTACCTAGTAAATGAAAGTAAAGATTCCAGTGCTTTAGTGGCAGATCAAAGTTCCCAAGGCAGAAGGCCGTTGGAAAAACTGGAGTCAACTGCTGATAATGATATACAAAAGCTGACAAATGAAATTGCTTATGGTGCAGCAAGTCAGAAATTAGGATCAGAATACCTTCTGTGGGATAAAGAAAGCTTTGAGAATGTTGAGGAGTTGCTTCCAGCAAACAACTCTGCTCTGGATAAACACTCTCCGACTAACAGTAGAAACCATAAACATCGAAGGAAAGGCAAGGAAAAAGCTTTATCTGACGAAAATCTTAGTGGGAGAATGTCCAAGAAAGCTTCATCTGATGAAGATCTTAGTGGGAGAATGTCAAAAGAAGAGGATGATAGCCATGAGAGTGTTGAGAGCTGTAACAGTGCCAGGTTAGTGCCCTCAGGCAAGAAGAGGTGGGGATTTGATGAACAGTTTATTGTTGGGAGTAAAAGATTCAGGAAGCAAATTCAAGAAACACCGGGTTGCACTTCCTATGTTAAACAAGATAGCTCCTTCATGAATTGGATATCTTCCATGATGAAGGGTTTCAAAAAATCAATACAGGATGAAGCACTACCTCTTTCTGCTGTACATCCTGATCATCCAAGTGAGAGTTCTGATAAGAAACTTATCACATACAACAAGAACCAAGATGCCGGAATAAAAAGTATTGGTTTCCAGTCAATTTTCCAGTCCTTGTATTGCCCTAGGGAAGAGGACAAGGGAACAAGAATGTCGAGTGGTAATAATGAAAAAGGAGAAAGATATGAGGAACTGGAGCAAGCTATTATTCCAAAAGTTTTTCATGGGGAGAAAATGCATCTAAGAAAAGGATGTCTGCTGCCTGTTGGAAAGTTCAGTGAATCTACAAGCAGAAATGAAGTAGGTTCAGCAATCCAACCTGAGATTTTATCTGCAAAAGTTGCCAGTAGTCAGGAGAAATGCAAGAATACTGATTCTGTGGAGAACAAATATGCATGCAACTTGGAGTATGGTAAAACTGAAGGAGGAGTTGGCTCTAGCTCTTCTCTCAGAAAACGTAAGAAAGAAAGTGCCGAGCATGTTGAATCTGACCCACAGTCTGAGGGGAAGACAACTGAGAAGTTTGTTCATGGAAGAGACCTTCTGGGAAGTTTGTGGGTAACTCGTTTCACTCCAAAAATATCAGCTCCATCATTTATGTCAGATCGTTACAGTGTTGGTGCAGTTCTTGACTGTTCCATTGACAAGAACAATGTGCTGGTGAGGGAGCAGTCAGTTGAAGATATAGTTGTTGTCTCCGCCAATGAGCTACAGGACTGTGCAGCAGACAGTGCAGGCTCACTTGCTTTTAATAGAAACGAAGGCCAGAGTAATGAGACGTCAGCTTCCAAACTAAATCCAATGGTTTCTGCCCCCAAGTTTGGAGGTTCTGAAGCAATGGCTTCTGTCTTTGCTAGGAGATTAGATGCTCTTAAGCACATCACACAATCTGGCATAACAGGTAATGCTGCTGATAAAATCATAACCTGTTTATTTTGTGGCATAAAAGGTCACCATCTGCGAGAGTGTTCAAAGATAAAAGATACTGAACTTCAGGGTTTACCAAGTAAATTCAAGTCTTATAATGGAGCAGAGTACCTGTCTTGTTTCTGCATTAGATGTTTAGAATGCAGTCATTGGGCTGTTGCATGTCCTAATGTGAATTTGGGACGACCTCAATTGGAATGTAATGTGTCTAATTACTGCAGTCCTAGTCAAACCAAGCTTAACGCAGAAGGAAATATGAAGCTCATAATTAGTACAGTGAGTGGATCTCAAGCTTCTGTGGATCAGGATGACTCAAGAGTGGAGACAGATCTTAATTGGAGCGGGAAATCATATGTAACCTCTAAGAAAATGAGACATTCTTCAAATTCAGTTAAGAAATACAGTGTCTCAAGCTCTGGGAAAAATAAGATAAAAGAAAAACAGTTCATCGCTTTGTCACAGTTTGTCCAGATGCCTGTTAAAGATGTACCTAAAGGAATCTCTGACTCTGTTAAAAGGCTTCGGTTATCTCGCACAGATGTCCTGAAATGGATGAGCTCTCATACCTCGCTCTCGAATCTGGAGGGATTTTTCTTGCGCCTGCGGCTTGGAAAATGTGAAACAGGACTAGGTGGAACTGGATACCATGTGTCATGCATAACTGGCACAACAGGTTCACAGAGCGAAAGTCATCCACAGAATGCCAGAAACTCTATATCTGTCAGTGTTGGGGGGATTAGATGTGTGGTTGAGACCCAGTATGTATCCAACCATGATTTCCTTGAGGATGAGCTGAGGGCATGGTGGTCTGCAATGTCAAAAAACAATGCCAAAATTCCATCTCAAGAAGACTTGAGAGAGAAGGAAAAGATGAAAAATTTGTTAGGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3

Protein Analysis

1047

Amino Acids

114.82

Weight (kDa)

5.75

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plus-3 PF03126 975 - 1076 4e-13 Plus-3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 272, 2343
AarI CACCTGC 1 cut(s) 95
AatII GACGTC 1 cut(s) 2102
Acc36I ACCTGC 2 cut(s) 95, 107
AccBSI CCGCTC 1 cut(s) 2589
AccI GTMKAC 1 cut(s) 176
AciI CCGC 3 cut(s) 2019, 2589, 2851
AclWI GGATC 3 cut(s) 871, 2539, 2556
AcoI YGGCCR 1 cut(s) 144
AcsI RAATTY 8 cut(s) 478, 522, 1203, 2330, 2422, 2632, 3081, 3124
AcuI CTGAAG 3 cut(s) 1761, 2172, 2297
AcyI GRCGYC 1 cut(s) 2099
AfaI GTAC 4 cut(s) 1329, 2357, 2521, 2736
AfiI CCNNNNNNNGG 4 cut(s) 515, 626, 880, 2141
AflII CTTAAG 1 cut(s) 2192
AgsI TTSAA 8 cut(s) 485, 1208, 1288, 1805, 2000, 2292, 2335, 2631
AhdI GACNNNNNGTC 1 cut(s) 1816
AjnI CCWGG 2 cut(s) 541, 1124
AjuI GAANNNNNNNTTGG 6 cut(s) 1336, 1368, 1734, 1766, 3008, 3040
Alw21I GWGCWC 2 cut(s) 221, 2807
Alw26I GTCTC 8 cut(s) 383, 1851, 2020, 2090, 2564, 2614, 2659, 2993
AlwI GGATC 3 cut(s) 871, 2539, 2556
AlwNI CAGNNNCTG 1 cut(s) 35
AoxI GGCC 3 cut(s) 144, 773, 2083
ApeKI GCWGC 6 cut(s) 239, 308, 845, 1579, 2042, 2228
ApoI RAATTY 8 cut(s) 478, 522, 1203, 2330, 2422, 2632, 3081, 3124
AseI ATTAAT 1 cut(s) 593
Asp700I GAANNNNTTC 2 cut(s) 873, 1283
AspA2I CCTAGG 1 cut(s) 1445
AspLEI GCGC 1 cut(s) 2847
AspS9I GGNCC 1 cut(s) 188
AsuC2I CCSGG 1 cut(s) 1218
AsuHPI GGTGA 6 cut(s) 201, 327, 443, 557, 1993, 2264
AvaII GGWCC 1 cut(s) 188
AvrII CCTAGG 1 cut(s) 1445
AxyI CCTNAGG 1 cut(s) 1138
BaeGI GKGCMC 1 cut(s) 1137
BalI TGGCCA 1 cut(s) 146
BanII GRGCYC 2 cut(s) 156, 2807
BbsI GAAGAC 2 cut(s) 1835, 3102
Bbv12I GWGCWC 2 cut(s) 221, 2807
BbvCI CCTCAGC 1 cut(s) 3041
BbvI GCAGC 6 cut(s) 226, 295, 857, 1566, 2054, 2215
BccI CCATC 5 cut(s) 628, 656, 1918, 2283, 3094
BceAI ACGGC 1 cut(s) 760
BcgI CGANNNNNNTGC 2 cut(s) 354, 388
BciT130I CCWGG 2 cut(s) 543, 1126
BciVI GTATCC 2 cut(s) 2882, 3022
BclI TGATCA 1 cut(s) 1336
BcnI CCSGG 1 cut(s) 1218
BcoDI GTCTC 8 cut(s) 383, 1851, 2020, 2090, 2564, 2614, 2659, 2993
BfaI CTAG 6 cut(s) 713, 1446, 1758, 2175, 2472, 2876
BfmI CTRYAG 5 cut(s) 177, 222, 252, 2030, 2464
BfrI CTTAAG 1 cut(s) 2192
BfuAI ACCTGC 2 cut(s) 95, 107
BfuI GTATCC 2 cut(s) 2882, 3022
BglII AGATCT 2 cut(s) 1057, 2575
BisI GCNGC 7 cut(s) 240, 309, 846, 1580, 2043, 2229, 2852
BlnI CCTAGG 1 cut(s) 1445
BlsI GCNGC 7 cut(s) 241, 310, 847, 1581, 2044, 2230, 2853
Bme1390I CCNGG 3 cut(s) 543, 1126, 1218
Bme18I GGWCC 1 cut(s) 188
BmeRI GACNNNNNGTC 1 cut(s) 1816
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 633
BmrFI CCNGG 3 cut(s) 543, 1126, 1218
BmrI ACTGGG 1 cut(s) 2998
BmsI GCATC 6 cut(s) 337, 495, 1381, 1567, 2176, 2709
BmuI ACTGGG 1 cut(s) 2998
BpiI GAAGAC 2 cut(s) 1835, 3102
BplI GAGNNNNNCTC 2 cut(s) 2518, 2550
BpmI CTGGAG 3 cut(s) 809, 1535, 2849
Bpu10I CCTNAGC 1 cut(s) 3041
BpuEI CTTGAG 6 cut(s) 2520, 2545, 2641, 3050, 3075, 3121
BpuMI CCSGG 1 cut(s) 1218
BsaBI GATNNNNATC 2 cut(s) 666, 1056
BsaHI GRCGYC 1 cut(s) 2099
BsaI GGTCTC 2 cut(s) 1851, 2993
BsaJI CCNNGG 2 cut(s) 763, 1445
Bsc4I CCNNNNNNNGG 4 cut(s) 515, 626, 880, 2141
Bse21I CCTNAGG 1 cut(s) 1138
Bse3DI GCAATG 4 cut(s) 202, 536, 2163, 3066
Bse8I GATNNNNATC 2 cut(s) 666, 1056
BseBI CCWGG 2 cut(s) 543, 1126
BseDI CCNNGG 2 cut(s) 763, 1445
BseJI GATNNNNATC 2 cut(s) 666, 1056
BseLI CCNNNNNNNGG 4 cut(s) 515, 626, 880, 2141
BseMI GCAATG 4 cut(s) 202, 536, 2163, 3066
BseRI GAGGAG 2 cut(s) 923, 1761
BseSI GKGCMC 1 cut(s) 1137
BseXI GCAGC 6 cut(s) 226, 295, 857, 1566, 2054, 2215
BsgI GTGCAG 5 cut(s) 123, 864, 1962, 2061, 2073
BshFI GGCC 3 cut(s) 146, 775, 2085
BsiHKAI GWGCWC 2 cut(s) 221, 2807
BsiSI CCGG 2 cut(s) 1217, 1395
BslFI GGGAC 1 cut(s) 2442
BslI CCNNNNNNNGG 4 cut(s) 515, 626, 880, 2141
BsmAI GTCTC 8 cut(s) 383, 1851, 2020, 2090, 2564, 2614, 2659, 2993
BsmBI CGTCTC 1 cut(s) 2090
BsmFI GGGAC 1 cut(s) 2442
BsmI GAATGC 2 cut(s) 2393, 2953
BsnI GGCC 3 cut(s) 146, 775, 2085
Bso31I GGTCTC 2 cut(s) 1851, 2993
Bsp1286I GDGCHC 4 cut(s) 156, 221, 1137, 2807
Bsp1407I TGTACA 1 cut(s) 1327
Bsp143I GATC 9 cut(s) 586, 751, 863, 1057, 1336, 1924, 2531, 2548, 2575
BspACI CCGC 3 cut(s) 2019, 2589, 2851
BspANI GGCC 3 cut(s) 146, 775, 2085
BspHI TCATGA 1 cut(s) 1254
BspLI GGNNCC 1 cut(s) 633
BspMAI CTGCAG 1 cut(s) 2468
BspMI ACCTGC 2 cut(s) 95, 107
BspPI GGATC 3 cut(s) 871, 2539, 2556
BspQI GCTCTTC 1 cut(s) 1768
BspTI CTTAAG 1 cut(s) 2192
BspTNI GGTCTC 2 cut(s) 1851, 2993
BsrBI CCGCTC 1 cut(s) 2589
BsrDI GCAATG 4 cut(s) 202, 536, 2163, 3066
BsrGI TGTACA 1 cut(s) 1327
BssECI CCNNGG 2 cut(s) 763, 1445
BssMI GATC 9 cut(s) 586, 751, 863, 1057, 1336, 1924, 2531, 2548, 2575
BssNI GRCGYC 1 cut(s) 2099
BssT1I CCWWGG 2 cut(s) 763, 1445
Bst2UI CCWGG 2 cut(s) 543, 1126
Bst6I CTCTTC 6 cut(s) 293, 1077, 1142, 1446, 1768, 1849
BstACI GRCGYC 1 cut(s) 2099
BstAFI CTTAAG 1 cut(s) 2192
BstAPI GCANNNNNTGC 2 cut(s) 1661, 2051
BstAUI TGTACA 1 cut(s) 1327
BstC8I GCNNGC 6 cut(s) 48, 654, 1521, 1717, 2056, 2849
BstEII GGTNACC 1 cut(s) 2270
BstENI CCTNNNNNAGG 1 cut(s) 513
BstHHI GCGC 1 cut(s) 2847
BstKTI GATC 9 cut(s) 589, 754, 866, 1060, 1339, 1927, 2534, 2551, 2578
BstMAI GTCTC 8 cut(s) 383, 1851, 2020, 2090, 2564, 2614, 2659, 2993
BstMBI GATC 9 cut(s) 586, 751, 863, 1057, 1336, 1924, 2531, 2548, 2575
BstMWI GCNNNNNNNGC 6 cut(s) 746, 842, 1661, 2051, 2851, 2910
BstNI CCWGG 2 cut(s) 543, 1126
BstNSI RCATGY 6 cut(s) 369, 652, 656, 1719, 1802, 2412
BstPI GGTNACC 1 cut(s) 2270
BstSCI CCNGG 3 cut(s) 541, 1124, 1216
BstSFI CTRYAG 5 cut(s) 177, 222, 252, 2030, 2464
BstSLI GKGCMC 1 cut(s) 1137
BstV1I GCAGC 6 cut(s) 226, 295, 857, 1566, 2054, 2215
BstV2I GAAGAC 2 cut(s) 1835, 3102
BstX2I RGATCY 3 cut(s) 1057, 2531, 2575
BstYI RGATCY 3 cut(s) 1057, 2531, 2575
Bsu36I CCTNAGG 1 cut(s) 1138
BsuI GTATCC 2 cut(s) 2882, 3022
BsuRI GGCC 3 cut(s) 146, 775, 2085
BtgZI GCGATG 1 cut(s) 2680
BveI ACCTGC 2 cut(s) 95, 107
Cac8I GCNNGC 6 cut(s) 48, 654, 1521, 1717, 2056, 2849
CaiI CAGNNNCTG 1 cut(s) 35
CciI TCATGA 1 cut(s) 1254
CfoI GCGC 1 cut(s) 2847
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 4 cut(s) 1328, 2356, 2520, 2735
CviQI GTAC 4 cut(s) 1328, 2356, 2520, 2735
DpnI GATC 9 cut(s) 588, 753, 865, 1059, 1338, 1926, 2533, 2550, 2577
DpnII GATC 9 cut(s) 586, 751, 863, 1057, 1336, 1924, 2531, 2548, 2575
DriI GACNNNNNGTC 1 cut(s) 1816
EaeI YGGCCR 1 cut(s) 144
Eam1104I CTCTTC 6 cut(s) 293, 1077, 1142, 1446, 1768, 1849
Eam1105I GACNNNNNGTC 1 cut(s) 1816
EarI CTCTTC 6 cut(s) 293, 1077, 1142, 1446, 1768, 1849
EciI GGCGGA 1 cut(s) 2008
Ecl136II GAGCTC 1 cut(s) 2805
Eco130I CCWWGG 2 cut(s) 763, 1445
Eco24I GRGCYC 2 cut(s) 156, 2807
Eco31I GGTCTC 2 cut(s) 1851, 2993
Eco32I GATATC 1 cut(s) 1266
Eco47I GGWCC 1 cut(s) 188
Eco53kI GAGCTC 1 cut(s) 2805
Eco57I CTGAAG 3 cut(s) 1761, 2172, 2297
Eco81I CCTNAGG 1 cut(s) 1138
Eco91I GGTNACC 1 cut(s) 2270
EcoICRI GAGCTC 1 cut(s) 2805
EcoNI CCTNNNNNAGG 1 cut(s) 513
EcoO65I GGTNACC 1 cut(s) 2270
EcoRII CCWGG 2 cut(s) 541, 1124
EcoRV GATATC 1 cut(s) 1266
EcoT14I CCWWGG 2 cut(s) 763, 1445
EcoT22I ATGCAT 4 cut(s) 654, 1560, 1717, 2906
EcoT38I GRGCYC 2 cut(s) 156, 2807
ErhI CCWWGG 2 cut(s) 763, 1445
Esp3I CGTCTC 1 cut(s) 2090
FaqI GGGAC 1 cut(s) 2442
FauI CCCGC 1 cut(s) 2582
FauNDI CATATG 1 cut(s) 2599
FbaI TGATCA 1 cut(s) 1336
FblI GTMKAC 1 cut(s) 176
Fnu4HI GCNGC 7 cut(s) 240, 309, 846, 1580, 2043, 2229, 2852
FriOI GRGCYC 2 cut(s) 156, 2807
Fsp4HI GCNGC 7 cut(s) 240, 309, 846, 1580, 2043, 2229, 2852
FspBI CTAG 6 cut(s) 713, 1446, 1758, 2175, 2472, 2876
GlaI GCGC 1 cut(s) 2846
GluI GCNGC 7 cut(s) 240, 309, 846, 1580, 2043, 2229, 2852
GsuI CTGGAG 3 cut(s) 809, 1535, 2849
HaeIII GGCC 3 cut(s) 146, 775, 2085
HapII CCGG 2 cut(s) 1217, 1395
HhaI GCGC 1 cut(s) 2847
Hin1I GRCGYC 1 cut(s) 2099
Hin6I GCGC 1 cut(s) 2845
HinP1I GCGC 1 cut(s) 2845
HincII GTYRAC 2 cut(s) 553, 795
HindII GTYRAC 2 cut(s) 553, 795
HindIII AAGCTT 6 cut(s) 321, 892, 999, 1041, 2483, 2538
HpaII CCGG 2 cut(s) 1217, 1395
HphI GGTGA 6 cut(s) 201, 327, 443, 557, 1993, 2264
Hpy166II GTNNAC 7 cut(s) 177, 460, 553, 617, 795, 2321, 2924
Hpy8I GTNNAC 7 cut(s) 177, 460, 553, 617, 795, 2321, 2924
HpyCH4IV ACGT 3 cut(s) 408, 1777, 2099
HpyF10VI GCNNNNNNNGC 6 cut(s) 746, 842, 1661, 2051, 2851, 2910
HpySE526I ACGT 3 cut(s) 408, 1777, 2099
Hsp92I GRCGYC 1 cut(s) 2099
HspAI GCGC 1 cut(s) 2845
Ksp22I TGATCA 1 cut(s) 1336
Kzo9I GATC 9 cut(s) 586, 751, 863, 1057, 1336, 1924, 2531, 2548, 2575
LguI GCTCTTC 1 cut(s) 1768
LmnI GCTCC 6 cut(s) 1253, 1516, 1912, 1987, 2348, 2586
Lsp1109I GCAGC 6 cut(s) 226, 295, 857, 1566, 2054, 2215
LweI GCATC 6 cut(s) 337, 495, 1381, 1567, 2176, 2709
MaeI CTAG 6 cut(s) 713, 1446, 1758, 2175, 2472, 2876
MaeII ACGT 3 cut(s) 408, 1777, 2099
MaeIII GTNAC 8 cut(s) 31, 199, 1115, 1879, 1928, 2270, 2602, 2703
MalI GATC 9 cut(s) 588, 753, 865, 1059, 1338, 1926, 2533, 2550, 2577
MbiI CCGCTC 1 cut(s) 2589
MboI GATC 9 cut(s) 586, 751, 863, 1057, 1336, 1924, 2531, 2548, 2575
MfeI CAATTG 1 cut(s) 2438
MflI RGATCY 3 cut(s) 1057, 2531, 2575
MhlI GDGCHC 4 cut(s) 156, 221, 1137, 2807
MlsI TGGCCA 1 cut(s) 146
MluNI TGGCCA 1 cut(s) 146
MlyI GAGTC 4 cut(s) 196, 800, 2552, 2747
MmeI TCCRAC 5 cut(s) 759, 977, 1567, 1660, 3039
Mox20I TGGCCA 1 cut(s) 146
Mph1103I ATGCAT 4 cut(s) 654, 1560, 1717, 2906
MroXI GAANNNNTTC 2 cut(s) 873, 1283
MscI TGGCCA 1 cut(s) 146
MseI TTAA 9 cut(s) 593, 1236, 2070, 2193, 2487, 2580, 2640, 2727, 2760
MslI CAYNNNNRTG 4 cut(s) 384, 657, 1101, 1344
Msp20I TGGCCA 1 cut(s) 146
MspCI CTTAAG 1 cut(s) 2192
MspI CCGG 2 cut(s) 1217, 1395
MspR9I CCNGG 3 cut(s) 543, 1126, 1218
MunI CAATTG 1 cut(s) 2438
Mva1269I GAATGC 2 cut(s) 2393, 2953
MvaI CCWGG 2 cut(s) 543, 1126
MwoI GCNNNNNNNGC 6 cut(s) 746, 842, 1661, 2051, 2851, 2910
NciI CCSGG 1 cut(s) 1218
NdeI CATATG 1 cut(s) 2599
NdeII GATC 9 cut(s) 586, 751, 863, 1057, 1336, 1924, 2531, 2548, 2575
NlaIV GGNNCC 1 cut(s) 633
NmeAIII GCCGAG 1 cut(s) 1819
NmuCI GTSAC 4 cut(s) 31, 199, 2270, 2703
NsiI ATGCAT 4 cut(s) 654, 1560, 1717, 2906
NspI RCATGY 6 cut(s) 369, 652, 656, 1719, 1802, 2412
PaeI GCATGC 2 cut(s) 656, 1719
PagI TCATGA 1 cut(s) 1254
PaqCI CACCTGC 1 cut(s) 95
PciSI GCTCTTC 1 cut(s) 1768
PctI GAATGC 2 cut(s) 2393, 2953
PdmI GAANNNNTTC 2 cut(s) 873, 1283
PfeI GAWTC 9 cut(s) 95, 354, 731, 1191, 1601, 1694, 1805, 2745, 2824
PkrI GCNGC 7 cut(s) 241, 310, 847, 1581, 2044, 2230, 2853
PleI GAGTC 4 cut(s) 196, 799, 2552, 2747
PpsI GAGTC 4 cut(s) 196, 799, 2552, 2747
PshBI ATTAAT 1 cut(s) 593
PsiI TTATAA 2 cut(s) 272, 2343
Psp124BI GAGCTC 1 cut(s) 2807
Psp6I CCWGG 2 cut(s) 541, 1124
PspEI GGTNACC 1 cut(s) 2270
PspGI CCWGG 2 cut(s) 541, 1124
PspN4I GGNNCC 1 cut(s) 633
PspPI GGNCC 1 cut(s) 188
PstI CTGCAG 1 cut(s) 2468
PstNI CAGNNNCTG 1 cut(s) 35
PsuI RGATCY 3 cut(s) 1057, 2531, 2575
RsaI GTAC 4 cut(s) 1329, 2357, 2521, 2736
RsaNI GTAC 4 cut(s) 1328, 2356, 2520, 2735
RseI CAYNNNNRTG 4 cut(s) 384, 657, 1101, 1344
SacI GAGCTC 1 cut(s) 2807
SapI GCTCTTC 1 cut(s) 1768
SaqAI TTAA 9 cut(s) 593, 1236, 2070, 2193, 2487, 2580, 2640, 2727, 2760
SatI GCNGC 7 cut(s) 240, 309, 846, 1580, 2043, 2229, 2852
Sau3AI GATC 9 cut(s) 586, 751, 863, 1057, 1336, 1924, 2531, 2548, 2575
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 4 cut(s) 196, 800, 2552, 2747
ScrFI CCNGG 3 cut(s) 543, 1126, 1218
SduI GDGCHC 4 cut(s) 156, 221, 1137, 2807
SfaNI GCATC 6 cut(s) 337, 495, 1381, 1567, 2176, 2709
SfcI CTRYAG 5 cut(s) 177, 222, 252, 2030, 2464
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 4 cut(s) 384, 657, 1101, 1344
SmlI CTYRAG 7 cut(s) 2192, 2535, 2560, 2656, 3029, 3090, 3100
SmoI CTYRAG 7 cut(s) 2192, 2535, 2560, 2656, 3029, 3090, 3100
SphI GCATGC 2 cut(s) 656, 1719
SsiI CCGC 3 cut(s) 2019, 2589, 2851
SspMI CTAG 6 cut(s) 713, 1446, 1758, 2175, 2472, 2876
SstI GAGCTC 1 cut(s) 2807
StyD4I CCNGG 3 cut(s) 541, 1124, 1216
StyI CCWWGG 2 cut(s) 763, 1445
TaiI ACGT 3 cut(s) 411, 1780, 2102
TaqI TCGA 4 cut(s) 374, 979, 1475, 2822
TatI WGTACW 2 cut(s) 1327, 2519
TauI GCSGC 1 cut(s) 2854
TfiI GAWTC 9 cut(s) 95, 354, 731, 1191, 1601, 1694, 1805, 2745, 2824
Tru1I TTAA 9 cut(s) 593, 1236, 2070, 2193, 2487, 2580, 2640, 2727, 2760
Tru9I TTAA 9 cut(s) 593, 1236, 2070, 2193, 2487, 2580, 2640, 2727, 2760
TseFI GTSAC 4 cut(s) 31, 199, 2270, 2703
TseI GCWGC 6 cut(s) 239, 308, 845, 1579, 2042, 2228
Tsp45I GTSAC 4 cut(s) 31, 199, 2270, 2703
Vha464I CTTAAG 1 cut(s) 2192
VpaK11BI GGWCC 1 cut(s) 188
VspI ATTAAT 1 cut(s) 593
XagI CCTNNNNNAGG 1 cut(s) 513
XapI RAATTY 8 cut(s) 478, 522, 1203, 2330, 2422, 2632, 3081, 3124
XceI RCATGY 6 cut(s) 369, 652, 656, 1719, 1802, 2412
XcmI CCANNNNNNNNNTGG 1 cut(s) 742
XmaJI CCTAGG 1 cut(s) 1445
XmiI GTMKAC 1 cut(s) 176
XmnI GAANNNNTTC 2 cut(s) 873, 1283
XspI CTAG 6 cut(s) 713, 1446, 1758, 2175, 2472, 2876
ZraI GACGTC 1 cut(s) 2100
Zsp2I ATGCAT 4 cut(s) 654, 1560, 1717, 2906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.