Zinc knuckle (CCHC-type) family protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Plus-3 | PF03126 | 908 - 1008 | 7.6e-14 | Plus-3 domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 89 |
| Acc36I | ACCTGC | 2 cut(s) | 89, 101 |
| AccI | GTMKAC | 1 cut(s) | 170 |
| AccII | CGCG | 1 cut(s) | 2381 |
| AciI | CCGC | 5 cut(s) | 206, 465, 2006, 2815, 2844 |
| AclI | AACGTT | 1 cut(s) | 1317 |
| AclWI | GGATC | 5 cut(s) | 620, 633, 753, 865, 2520 |
| AcoI | YGGCCR | 1 cut(s) | 138 |
| AcsI | RAATTY | 9 cut(s) | 262, 520, 750, 1197, 2198, 2291, 2563, 2596, 2709 |
| AcuI | CTGAAG | 5 cut(s) | 1632, 1803, 2133, 2258, 2520 |
| AcvI | CACGTG | 1 cut(s) | 1340 |
| AcyI | GRCGYC | 1 cut(s) | 351 |
| AfaI | GTAC | 4 cut(s) | 807, 1323, 1609, 2700 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 512, 874, 2102 |
| AflII | CTTAAG | 1 cut(s) | 2153 |
| AgeI | ACCGGT | 1 cut(s) | 2653 |
| AjnI | CCWGG | 3 cut(s) | 538, 1210, 1452 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 2972, 3004, 3077 |
| AleI | CACNNNNGTG | 1 cut(s) | 1996 |
| Alw26I | GTCTC | 6 cut(s) | 380, 1812, 1981, 2528, 2578, 2745 |
| AlwI | GGATC | 5 cut(s) | 620, 633, 753, 865, 2520 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 35, 814 |
| Ama87I | CYCGRG | 2 cut(s) | 872, 2524 |
| AoxI | GGCC | 4 cut(s) | 138, 230, 767, 2964 |
| ApeKI | GCWGC | 6 cut(s) | 305, 839, 1573, 1655, 2003, 2189 |
| ApoI | RAATTY | 9 cut(s) | 262, 520, 750, 1197, 2198, 2291, 2563, 2596, 2709 |
| AseI | ATTAAT | 1 cut(s) | 1877 |
| AsiGI | ACCGGT | 1 cut(s) | 2653 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 396, 522, 1277 |
| AspS9I | GGNCC | 5 cut(s) | 182, 467, 768, 1450, 2965 |
| AsuHPI | GGTGA | 6 cut(s) | 195, 554, 647, 1310, 2225, 2495 |
| AvaI | CYCGRG | 2 cut(s) | 872, 2524 |
| AvaII | GGWCC | 3 cut(s) | 182, 467, 1450 |
| AxyI | CCTNAGG | 1 cut(s) | 1500 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2682, 2715 |
| BalI | TGGCCA | 1 cut(s) | 140 |
| BamHI | GGATCC | 1 cut(s) | 625 |
| BanII | GRGCYC | 1 cut(s) | 150 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2715, 2747 |
| BbrPI | CACGTG | 1 cut(s) | 1340 |
| BbsI | GAAGAC | 3 cut(s) | 645, 2316, 3066 |
| BbvCI | CCTCAGC | 1 cut(s) | 3005 |
| BbvI | GCAGC | 6 cut(s) | 292, 851, 1560, 1642, 2015, 2176 |
| BccI | CCATC | 5 cut(s) | 998, 1040, 2176, 2758, 3058 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 77, 111, 351, 385 |
| BciT130I | CCWGG | 3 cut(s) | 540, 1212, 1454 |
| BciVI | GTATCC | 1 cut(s) | 2986 |
| BclI | TGATCA | 2 cut(s) | 1330, 1807 |
| BcoDI | GTCTC | 6 cut(s) | 380, 1812, 1981, 2528, 2578, 2745 |
| BfaI | CTAG | 6 cut(s) | 707, 1119, 1556, 2136, 2840, 2850 |
| BfmI | CTRYAG | 2 cut(s) | 171, 2428 |
| BfrI | CTTAAG | 1 cut(s) | 2153 |
| BfuAI | ACCTGC | 2 cut(s) | 89, 101 |
| BfuI | GTATCC | 1 cut(s) | 2986 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2172 |
| BglII | AGATCT | 2 cut(s) | 1009, 2539 |
| BisI | GCNGC | 7 cut(s) | 306, 840, 1574, 1656, 2004, 2190, 2816 |
| BlsI | GCNGC | 7 cut(s) | 307, 841, 1575, 1657, 2005, 2191, 2817 |
| Bme1390I | CCNGG | 3 cut(s) | 540, 1212, 1454 |
| Bme18I | GGWCC | 3 cut(s) | 182, 467, 1450 |
| BmeT110I | CYCGRG | 2 cut(s) | 872, 2524 |
| BmgT120I | GGNCC | 5 cut(s) | 182, 467, 768, 1450, 2965 |
| BmiI | GGNNCC | 2 cut(s) | 147, 627 |
| BmrFI | CCNGG | 3 cut(s) | 540, 1212, 1454 |
| BmrI | ACTGGG | 1 cut(s) | 2962 |
| BmsI | GCATC | 6 cut(s) | 307, 334, 492, 561, 1375, 2137 |
| BmuI | ACTGGG | 1 cut(s) | 2962 |
| BpiI | GAAGAC | 3 cut(s) | 645, 2316, 3066 |
| BpmI | CTGGAG | 3 cut(s) | 534, 803, 2813 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3005 |
| BpuEI | CTTGAG | 3 cut(s) | 1529, 3014, 3085 |
| BsaAI | YACGTR | 2 cut(s) | 647, 1340 |
| BsaBI | GATNNNNATC | 2 cut(s) | 660, 1008 |
| BsaHI | GRCGYC | 1 cut(s) | 351 |
| BsaI | GGTCTC | 1 cut(s) | 1812 |
| BsaJI | CCNNGG | 7 cut(s) | 141, 757, 771, 871, 1439, 1453, 1692 |
| BsaWI | WCCGGW | 2 cut(s) | 1979, 2653 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 137, 167, 1937, 1967 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 512, 874, 2102 |
| Bse118I | RCCGGY | 1 cut(s) | 2653 |
| Bse21I | CCTNAGG | 1 cut(s) | 1500 |
| Bse3DI | GCAATG | 3 cut(s) | 196, 533, 2124 |
| Bse8I | GATNNNNATC | 2 cut(s) | 660, 1008 |
| BseBI | CCWGG | 3 cut(s) | 540, 1212, 1454 |
| BseDI | CCNNGG | 7 cut(s) | 141, 757, 771, 871, 1439, 1453, 1692 |
| BseGI | GGATG | 9 cut(s) | 10, 1087, 1324, 1571, 2524, 2658, 2769, 2902, 3004 |
| BseJI | GATNNNNATC | 2 cut(s) | 660, 1008 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 512, 874, 2102 |
| BseMI | GCAATG | 3 cut(s) | 196, 533, 2124 |
| BseMII | CTCAG | 9 cut(s) | 231, 288, 489, 806, 1491, 1626, 2400, 2903, 2996 |
| BseRI | GAGGAG | 3 cut(s) | 860, 917, 1961 |
| BseXI | GCAGC | 6 cut(s) | 292, 851, 1560, 1642, 2015, 2176 |
| BsgI | GTGCAG | 4 cut(s) | 117, 858, 1923, 2022 |
| Bsh1236I | CGCG | 1 cut(s) | 2381 |
| BshFI | GGCC | 4 cut(s) | 140, 232, 769, 2966 |
| BshTI | ACCGGT | 1 cut(s) | 2653 |
| BsiHKCI | CYCGRG | 2 cut(s) | 872, 2524 |
| BsiSI | CCGG | 2 cut(s) | 1980, 2654 |
| BslFI | GGGAC | 2 cut(s) | 1189, 2406 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 512, 874, 2102 |
| BsmAI | GTCTC | 6 cut(s) | 380, 1812, 1981, 2528, 2578, 2745 |
| BsmFI | GGGAC | 2 cut(s) | 1189, 2406 |
| BsmI | GAATGC | 3 cut(s) | 869, 2354, 2917 |
| BsnI | GGCC | 4 cut(s) | 140, 232, 769, 2966 |
| Bso31I | GGTCTC | 1 cut(s) | 1812 |
| BsoBI | CYCGRG | 2 cut(s) | 872, 2524 |
| Bsp1286I | GDGCHC | 1 cut(s) | 150 |
| Bsp1407I | TGTACA | 2 cut(s) | 805, 1321 |
| BspACI | CCGC | 5 cut(s) | 206, 465, 2006, 2815, 2844 |
| BspANI | GGCC | 4 cut(s) | 140, 232, 769, 2966 |
| BspCNI | CTCAG | 9 cut(s) | 232, 287, 490, 807, 1492, 1627, 2399, 2902, 2997 |
| BspFNI | CGCG | 1 cut(s) | 2381 |
| BspHI | TCATGA | 4 cut(s) | 1248, 1480, 1909, 2202 |
| BspLI | GGNNCC | 2 cut(s) | 147, 627 |
| BspMAI | CTGCAG | 1 cut(s) | 2432 |
| BspMI | ACCTGC | 2 cut(s) | 89, 101 |
| BspPI | GGATC | 5 cut(s) | 620, 633, 753, 865, 2520 |
| BspTI | CTTAAG | 1 cut(s) | 2153 |
| BspTNI | GGTCTC | 1 cut(s) | 1812 |
| BsrDI | GCAATG | 3 cut(s) | 196, 533, 2124 |
| BsrFI | RCCGGY | 1 cut(s) | 2653 |
| BsrGI | TGTACA | 2 cut(s) | 805, 1321 |
| BssAI | RCCGGY | 1 cut(s) | 2653 |
| BssECI | CCNNGG | 7 cut(s) | 141, 757, 771, 871, 1439, 1453, 1692 |
| BssNI | GRCGYC | 1 cut(s) | 351 |
| BssT1I | CCWWGG | 3 cut(s) | 757, 771, 1439 |
| Bst2UI | CCWGG | 3 cut(s) | 540, 1212, 1454 |
| Bst4CI | ACNGT | 7 cut(s) | 956, 1115, 1164, 1895, 2615, 2673, 3093 |
| Bst6I | CTCTTC | 5 cut(s) | 252, 290, 1136, 1810, 2481 |
| BstACI | GRCGYC | 1 cut(s) | 351 |
| BstAFI | CTTAAG | 1 cut(s) | 2153 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1655 |
| BstAUI | TGTACA | 2 cut(s) | 805, 1321 |
| BstBAI | YACGTR | 2 cut(s) | 647, 1340 |
| BstC8I | GCNNGC | 6 cut(s) | 77, 310, 349, 360, 1515, 2017 |
| BstDSI | CCRYGG | 2 cut(s) | 141, 1692 |
| BstEII | GGTNACC | 1 cut(s) | 2231 |
| BstF5I | GGATG | 9 cut(s) | 10, 1087, 1324, 1571, 2524, 2658, 2769, 2902, 3004 |
| BstFNI | CGCG | 1 cut(s) | 2381 |
| BstMAI | GTCTC | 6 cut(s) | 380, 1812, 1981, 2528, 2578, 2745 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 836, 1655, 2012, 2172, 2742, 2815 |
| BstNI | CCWGG | 3 cut(s) | 540, 1212, 1454 |
| BstNSI | RCATGY | 2 cut(s) | 1763, 2373 |
| BstPI | GGTNACC | 1 cut(s) | 2231 |
| BstSCI | CCNGG | 3 cut(s) | 538, 1210, 1452 |
| BstSFI | CTRYAG | 2 cut(s) | 171, 2428 |
| BstUI | CGCG | 1 cut(s) | 2381 |
| BstV1I | GCAGC | 6 cut(s) | 292, 851, 1560, 1642, 2015, 2176 |
| BstV2I | GAAGAC | 3 cut(s) | 645, 2316, 3066 |
| BstX2I | RGATCY | 3 cut(s) | 625, 1009, 2539 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1388 |
| BstYI | RGATCY | 3 cut(s) | 625, 1009, 2539 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1500 |
| BsuI | GTATCC | 1 cut(s) | 2986 |
| BsuRI | GGCC | 4 cut(s) | 140, 232, 769, 2966 |
| BtgI | CCRYGG | 2 cut(s) | 141, 1692 |
| BtsCI | GGATG | 9 cut(s) | 10, 1087, 1324, 1571, 2524, 2658, 2769, 2902, 3004 |
| BtsI | GCAGTG | 1 cut(s) | 1775 |
| BtsIMutI | CAGTG | 8 cut(s) | 36, 68, 123, 1120, 1775, 1900, 2394, 2620 |
| BveI | ACCTGC | 2 cut(s) | 89, 101 |
| Cac8I | GCNNGC | 6 cut(s) | 77, 310, 349, 360, 1515, 2017 |
| CaiI | CAGNNNCTG | 2 cut(s) | 35, 814 |
| CciI | TCATGA | 4 cut(s) | 1248, 1480, 1909, 2202 |
| Cfr10I | RCCGGY | 1 cut(s) | 2653 |
| Cfr13I | GGNCC | 5 cut(s) | 182, 467, 768, 1450, 2965 |
| CseI | GACGC | 2 cut(s) | 340, 2798 |
| CsiI | ACCWGGT | 1 cut(s) | 1210 |
| Csp6I | GTAC | 4 cut(s) | 806, 1322, 1608, 2699 |
| CspAI | ACCGGT | 1 cut(s) | 2653 |
| CviQI | GTAC | 4 cut(s) | 806, 1322, 1608, 2699 |
| EaeI | YGGCCR | 1 cut(s) | 138 |
| Eam1104I | CTCTTC | 5 cut(s) | 252, 290, 1136, 1810, 2481 |
| EarI | CTCTTC | 5 cut(s) | 252, 290, 1136, 1810, 2481 |
| EciI | GGCGGA | 1 cut(s) | 2859 |
| Eco130I | CCWWGG | 3 cut(s) | 757, 771, 1439 |
| Eco147I | AGGCCT | 1 cut(s) | 232 |
| Eco24I | GRGCYC | 1 cut(s) | 150 |
| Eco31I | GGTCTC | 1 cut(s) | 1812 |
| Eco32I | GATATC | 1 cut(s) | 1260 |
| Eco47I | GGWCC | 3 cut(s) | 182, 467, 1450 |
| Eco57I | CTGAAG | 5 cut(s) | 1632, 1803, 2133, 2258, 2520 |
| Eco72I | CACGTG | 1 cut(s) | 1340 |
| Eco81I | CCTNAGG | 1 cut(s) | 1500 |
| Eco88I | CYCGRG | 2 cut(s) | 872, 2524 |
| Eco91I | GGTNACC | 1 cut(s) | 2231 |
| EcoO109I | RGGNCCY | 1 cut(s) | 768 |
| EcoO65I | GGTNACC | 1 cut(s) | 2231 |
| EcoRII | CCWGG | 3 cut(s) | 538, 1210, 1452 |
| EcoRV | GATATC | 1 cut(s) | 1260 |
| EcoT14I | CCWWGG | 3 cut(s) | 757, 771, 1439 |
| EcoT38I | GRGCYC | 1 cut(s) | 150 |
| ErhI | CCWWGG | 3 cut(s) | 757, 771, 1439 |
| FaqI | GGGAC | 2 cut(s) | 1189, 2406 |
| FbaI | TGATCA | 2 cut(s) | 1330, 1807 |
| FblI | GTMKAC | 1 cut(s) | 170 |
| Fnu4HI | GCNGC | 7 cut(s) | 306, 840, 1574, 1656, 2004, 2190, 2816 |
| FokI | GGATG | 9 cut(s) | 17, 1094, 1311, 1578, 2531, 2645, 2776, 2889, 3011 |
| FriOI | GRGCYC | 1 cut(s) | 150 |
| Fsp4HI | GCNGC | 7 cut(s) | 306, 840, 1574, 1656, 2004, 2190, 2816 |
| FspBI | CTAG | 6 cut(s) | 707, 1119, 1556, 2136, 2840, 2850 |
| GluI | GCNGC | 7 cut(s) | 306, 840, 1574, 1656, 2004, 2190, 2816 |
| GsuI | CTGGAG | 3 cut(s) | 534, 803, 2813 |
| HaeIII | GGCC | 4 cut(s) | 140, 232, 769, 2966 |
| HapII | CCGG | 2 cut(s) | 1980, 2654 |
| HgaI | GACGC | 2 cut(s) | 340, 2798 |
| Hin1I | GRCGYC | 1 cut(s) | 351 |
| HincII | GTYRAC | 2 cut(s) | 550, 789 |
| HindII | GTYRAC | 2 cut(s) | 550, 789 |
| HindIII | AAGCTT | 2 cut(s) | 2447, 2502 |
| HpaII | CCGG | 2 cut(s) | 1980, 2654 |
| HphI | GGTGA | 6 cut(s) | 195, 554, 647, 1310, 2225, 2495 |
| Hpy166II | GTNNAC | 5 cut(s) | 171, 457, 550, 611, 789 |
| Hpy8I | GTNNAC | 5 cut(s) | 171, 457, 550, 611, 789 |
| HpyAV | CCTTC | 8 cut(s) | 889, 969, 1070, 1255, 1267, 1778, 1832, 2453 |
| HpyCH4III | ACNGT | 7 cut(s) | 956, 1115, 1164, 1895, 2615, 2673, 3093 |
| HpyCH4IV | ACGT | 5 cut(s) | 405, 646, 1317, 1339, 1738 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 836, 1655, 2012, 2172, 2742, 2815 |
| HpySE526I | ACGT | 5 cut(s) | 405, 646, 1317, 1339, 1738 |
| Hsp92I | GRCGYC | 1 cut(s) | 351 |
| Ksp22I | TGATCA | 2 cut(s) | 1330, 1807 |
| LmnI | GCTCC | 6 cut(s) | 145, 1247, 1922, 1948, 2309, 2478 |
| Lsp1109I | GCAGC | 6 cut(s) | 292, 851, 1560, 1642, 2015, 2176 |
| LweI | GCATC | 6 cut(s) | 307, 334, 492, 561, 1375, 2137 |
| MabI | ACCWGGT | 1 cut(s) | 1210 |
| MaeI | CTAG | 6 cut(s) | 707, 1119, 1556, 2136, 2840, 2850 |
| MaeII | ACGT | 5 cut(s) | 405, 646, 1317, 1339, 1738 |
| MaeIII | GTNAC | 7 cut(s) | 31, 1109, 1840, 1889, 2231, 2667, 2689 |
| MfeI | CAATTG | 1 cut(s) | 2402 |
| MflI | RGATCY | 3 cut(s) | 625, 1009, 2539 |
| MhlI | GDGCHC | 1 cut(s) | 150 |
| MlsI | TGGCCA | 1 cut(s) | 140 |
| MluNI | TGGCCA | 1 cut(s) | 140 |
| MlyI | GAGTC | 5 cut(s) | 794, 917, 2500, 2516, 2711 |
| MmeI | TCCRAC | 2 cut(s) | 971, 3003 |
| Mox20I | TGGCCA | 1 cut(s) | 140 |
| MroXI | GAANNNNTTC | 3 cut(s) | 396, 522, 1277 |
| MscI | TGGCCA | 1 cut(s) | 140 |
| MseI | TTAA | 9 cut(s) | 1230, 1314, 1877, 2031, 2154, 2451, 2549, 2561, 2604 |
| MslI | CAYNNNNRTG | 4 cut(s) | 381, 1095, 1338, 1996 |
| Msp20I | TGGCCA | 1 cut(s) | 140 |
| MspA1I | CMGCKG | 1 cut(s) | 2006 |
| MspCI | CTTAAG | 1 cut(s) | 2153 |
| MspI | CCGG | 2 cut(s) | 1980, 2654 |
| MspR9I | CCNGG | 3 cut(s) | 540, 1212, 1454 |
| MunI | CAATTG | 1 cut(s) | 2402 |
| Mva1269I | GAATGC | 3 cut(s) | 869, 2354, 2917 |
| MvaI | CCWGG | 3 cut(s) | 540, 1212, 1454 |
| MvnI | CGCG | 1 cut(s) | 2381 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 836, 1655, 2012, 2172, 2742, 2815 |
| NlaIV | GGNNCC | 2 cut(s) | 147, 627 |
| NmuCI | GTSAC | 3 cut(s) | 31, 2231, 2667 |
| NspI | RCATGY | 2 cut(s) | 1763, 2373 |
| OliI | CACNNNNGTG | 1 cut(s) | 1996 |
| PaeR7I | CTCGAG | 1 cut(s) | 2524 |
| PagI | TCATGA | 4 cut(s) | 1248, 1480, 1909, 2202 |
| PaqCI | CACCTGC | 1 cut(s) | 89 |
| PceI | AGGCCT | 1 cut(s) | 232 |
| PctI | GAATGC | 3 cut(s) | 869, 2354, 2917 |
| PdmI | GAANNNNTTC | 3 cut(s) | 396, 522, 1277 |
| PflFI | GACNNNGTC | 1 cut(s) | 328 |
| PinAI | ACCGGT | 1 cut(s) | 2653 |
| PkrI | GCNGC | 7 cut(s) | 307, 841, 1575, 1657, 2005, 2191, 2817 |
| PleI | GAGTC | 5 cut(s) | 793, 917, 2499, 2516, 2711 |
| PmaCI | CACGTG | 1 cut(s) | 1340 |
| PmlI | CACGTG | 1 cut(s) | 1340 |
| PpsI | GAGTC | 5 cut(s) | 793, 917, 2499, 2516, 2711 |
| Ppu21I | YACGTR | 2 cut(s) | 647, 1340 |
| PshBI | ATTAAT | 1 cut(s) | 1877 |
| Psp1406I | AACGTT | 1 cut(s) | 1317 |
| Psp6I | CCWGG | 3 cut(s) | 538, 1210, 1452 |
| PspCI | CACGTG | 1 cut(s) | 1340 |
| PspEI | GGTNACC | 1 cut(s) | 2231 |
| PspGI | CCWGG | 3 cut(s) | 538, 1210, 1452 |
| PspN4I | GGNNCC | 2 cut(s) | 147, 627 |
| PspPI | GGNCC | 5 cut(s) | 182, 467, 768, 1450, 2965 |
| PstI | CTGCAG | 1 cut(s) | 2432 |
| PstNI | CAGNNNCTG | 2 cut(s) | 35, 814 |
| PsuI | RGATCY | 3 cut(s) | 625, 1009, 2539 |
| PsyI | GACNNNGTC | 1 cut(s) | 328 |
| RsaI | GTAC | 4 cut(s) | 807, 1323, 1609, 2700 |
| RsaNI | GTAC | 4 cut(s) | 806, 1322, 1608, 2699 |
| RseI | CAYNNNNRTG | 4 cut(s) | 381, 1095, 1338, 1996 |
| SaqAI | TTAA | 9 cut(s) | 1230, 1314, 1877, 2031, 2154, 2451, 2549, 2561, 2604 |
| SatI | GCNGC | 7 cut(s) | 306, 840, 1574, 1656, 2004, 2190, 2816 |
| Sau96I | GGNCC | 5 cut(s) | 182, 467, 768, 1450, 2965 |
| SchI | GAGTC | 5 cut(s) | 794, 917, 2500, 2516, 2711 |
| ScrFI | CCNGG | 3 cut(s) | 540, 1212, 1454 |
| SduI | GDGCHC | 1 cut(s) | 150 |
| SexAI | ACCWGGT | 1 cut(s) | 1210 |
| SfaNI | GCATC | 6 cut(s) | 307, 334, 492, 561, 1375, 2137 |
| SfcI | CTRYAG | 2 cut(s) | 171, 2428 |
| Sfr274I | CTCGAG | 1 cut(s) | 2524 |
| SinI | GGWCC | 3 cut(s) | 182, 467, 1450 |
| SlaI | CTCGAG | 1 cut(s) | 2524 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 381, 1095, 1338, 1996 |
| SmlI | CTYRAG | 5 cut(s) | 1508, 2153, 2524, 2993, 3064 |
| SmoI | CTYRAG | 5 cut(s) | 1508, 2153, 2524, 2993, 3064 |
| SseBI | AGGCCT | 1 cut(s) | 232 |
| SsiI | CCGC | 5 cut(s) | 206, 465, 2006, 2815, 2844 |
| SspI | AATATT | 1 cut(s) | 1054 |
| SspMI | CTAG | 6 cut(s) | 707, 1119, 1556, 2136, 2840, 2850 |
| StuI | AGGCCT | 1 cut(s) | 232 |
| StyD4I | CCNGG | 3 cut(s) | 538, 1210, 1452 |
| StyI | CCWWGG | 3 cut(s) | 757, 771, 1439 |
| TaaI | ACNGT | 7 cut(s) | 956, 1115, 1164, 1895, 2615, 2673, 3093 |
| TaiI | ACGT | 5 cut(s) | 408, 649, 1320, 1342, 1741 |
| TaqI | TCGA | 6 cut(s) | 371, 973, 1755, 1813, 2494, 2525 |
| TatI | WGTACW | 3 cut(s) | 805, 1321, 1607 |
| TauI | GCSGC | 1 cut(s) | 2818 |
| Tru1I | TTAA | 9 cut(s) | 1230, 1314, 1877, 2031, 2154, 2451, 2549, 2561, 2604 |
| Tru9I | TTAA | 9 cut(s) | 1230, 1314, 1877, 2031, 2154, 2451, 2549, 2561, 2604 |
| TscAI | CASTG | 8 cut(s) | 36, 68, 123, 1120, 1782, 1900, 2394, 2620 |
| TseFI | GTSAC | 3 cut(s) | 31, 2231, 2667 |
| TseI | GCWGC | 6 cut(s) | 305, 839, 1573, 1655, 2003, 2189 |
| Tsp45I | GTSAC | 3 cut(s) | 31, 2231, 2667 |
| TspGWI | ACGGA | 2 cut(s) | 158, 1681 |
| TspRI | CASTG | 8 cut(s) | 36, 68, 123, 1120, 1782, 1900, 2394, 2620 |
| Tth111I | GACNNNGTC | 1 cut(s) | 328 |
| Vha464I | CTTAAG | 1 cut(s) | 2153 |
| VpaK11BI | GGWCC | 3 cut(s) | 182, 467, 1450 |
| VspI | ATTAAT | 1 cut(s) | 1877 |
| XapI | RAATTY | 9 cut(s) | 262, 520, 750, 1197, 2198, 2291, 2563, 2596, 2709 |
| XceI | RCATGY | 2 cut(s) | 1763, 2373 |
| XhoI | CTCGAG | 1 cut(s) | 2524 |
| XmiI | GTMKAC | 1 cut(s) | 170 |
| XmnI | GAANNNNTTC | 3 cut(s) | 396, 522, 1277 |
| XspI | CTAG | 6 cut(s) | 707, 1119, 1556, 2136, 2840, 2850 |