Zinc knuckle (CCHC-type) family protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Plus-3 | PF03126 | 908 - 1003 | 3.3e-11 | Plus-3 domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 269, 1653 |
| AarI | CACCTGC | 1 cut(s) | 89 |
| Acc36I | ACCTGC | 3 cut(s) | 89, 101, 1577 |
| AccB1I | GGYRCC | 2 cut(s) | 1258, 2138 |
| AciI | CCGC | 5 cut(s) | 363, 413, 619, 1967, 2815 |
| AclI | AACGTT | 2 cut(s) | 1509, 2379 |
| AclWI | GGATC | 6 cut(s) | 140, 617, 630, 684, 1001, 1718 |
| AcsI | RAATTY | 7 cut(s) | 302, 511, 1152, 1526, 1717, 1760, 2596 |
| AcuI | CTGAAG | 5 cut(s) | 1131, 2082, 2222, 2777, 3063 |
| AdeI | CACNNNGTG | 2 cut(s) | 2138, 2172 |
| AfaI | GTAC | 4 cut(s) | 437, 2464, 2700, 2746 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 362, 379, 1295 |
| AflII | CTTAAG | 1 cut(s) | 2117 |
| AflIII | ACRYGT | 2 cut(s) | 1328, 2498 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 456 |
| AhlI | ACTAGT | 1 cut(s) | 40 |
| AjnI | CCWGG | 4 cut(s) | 441, 868, 1907, 2134 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2960, 2992 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1560, 1592, 2459, 2491 |
| Alw21I | GWGCWC | 1 cut(s) | 1883 |
| Alw26I | GTCTC | 4 cut(s) | 333, 2222, 2522, 2745 |
| AlwI | GGATC | 6 cut(s) | 140, 617, 630, 684, 1001, 1718 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 863 |
| Ama87I | CYCGRG | 2 cut(s) | 1469, 2792 |
| AoxI | GGCC | 5 cut(s) | 730, 764, 1519, 2008, 2325 |
| ApeKI | GCWGC | 3 cut(s) | 236, 836, 2153 |
| ApoI | RAATTY | 7 cut(s) | 302, 511, 1152, 1526, 1717, 1760, 2596 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 924, 2086 |
| AspLEI | GCGC | 3 cut(s) | 1073, 2026, 2811 |
| AspS9I | GGNCC | 6 cut(s) | 731, 854, 1777, 1826, 2008, 2325 |
| AsuHPI | GGTGA | 9 cut(s) | 98, 195, 551, 668, 751, 1237, 1934, 2119, 2189 |
| AsuII | TTCGAA | 1 cut(s) | 2478 |
| AvaI | CYCGRG | 2 cut(s) | 1469, 2792 |
| AvaII | GGWCC | 3 cut(s) | 854, 1777, 1826 |
| BamHI | GGATCC | 1 cut(s) | 622 |
| BanI | GGYRCC | 2 cut(s) | 1258, 2138 |
| BanII | GRGCYC | 3 cut(s) | 1883, 1985, 2572 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2715, 2747 |
| BbsI | GAAGAC | 1 cut(s) | 1754 |
| Bbv12I | GWGCWC | 1 cut(s) | 1883 |
| BbvCI | CCTCAGC | 1 cut(s) | 2993 |
| BbvI | GCAGC | 3 cut(s) | 223, 848, 2165 |
| BccI | CCATC | 6 cut(s) | 995, 1343, 1837, 1859, 2432, 2758 |
| BciT130I | CCWGG | 4 cut(s) | 443, 870, 1909, 2136 |
| BciVI | GTATCC | 3 cut(s) | 114, 2843, 2974 |
| BclI | TGATCA | 2 cut(s) | 658, 1291 |
| BcoDI | GTCTC | 4 cut(s) | 333, 2222, 2522, 2745 |
| BcuI | ACTAGT | 1 cut(s) | 40 |
| BfaI | CTAG | 5 cut(s) | 41, 456, 779, 1728, 2100 |
| BfmI | CTRYAG | 3 cut(s) | 1404, 2401, 2913 |
| BfoI | RGCGCY | 1 cut(s) | 2027 |
| BfrI | CTTAAG | 1 cut(s) | 2117 |
| BfuAI | ACCTGC | 3 cut(s) | 89, 101, 1577 |
| BfuI | GTATCC | 3 cut(s) | 114, 2843, 2974 |
| BglII | AGATCT | 1 cut(s) | 1106 |
| BisI | GCNGC | 6 cut(s) | 237, 414, 837, 1968, 2154, 2816 |
| BlsI | GCNGC | 6 cut(s) | 238, 415, 838, 1969, 2155, 2817 |
| Bme1390I | CCNGG | 4 cut(s) | 443, 870, 1909, 2136 |
| Bme18I | GGWCC | 3 cut(s) | 854, 1777, 1826 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 456 |
| BmeT110I | CYCGRG | 2 cut(s) | 1469, 2792 |
| BmgT120I | GGNCC | 6 cut(s) | 731, 854, 1777, 1826, 2008, 2325 |
| BmiI | GGNNCC | 9 cut(s) | 141, 624, 909, 1260, 1615, 1778, 1906, 2140, 2569 |
| BmrFI | CCNGG | 4 cut(s) | 443, 870, 1909, 2136 |
| BmrI | ACTGGG | 2 cut(s) | 698, 1764 |
| BmsI | GCATC | 3 cut(s) | 976, 2101, 2649 |
| BmuI | ACTGGG | 2 cut(s) | 698, 1764 |
| BpiI | GAAGAC | 1 cut(s) | 1754 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2819, 2993 |
| Bpu14I | TTCGAA | 1 cut(s) | 2478 |
| BpuEI | CTTGAG | 2 cut(s) | 1895, 2413 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1005, 1305 |
| BsaJI | CCNNGG | 3 cut(s) | 868, 869, 1908 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 313, 343, 2459, 2489 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 362, 379, 1295 |
| Bse1I | ACTGG | 6 cut(s) | 704, 1615, 1759, 2464, 2851, 2875 |
| Bse3DI | GCAATG | 4 cut(s) | 196, 346, 1051, 2568 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1005, 1305 |
| BseBI | CCWGG | 4 cut(s) | 443, 870, 1909, 2136 |
| BseDI | CCNNGG | 3 cut(s) | 868, 869, 1908 |
| BseGI | GGATG | 5 cut(s) | 1175, 1285, 1431, 2116, 2769 |
| BseJI | GATNNNNATC | 2 cut(s) | 1005, 1305 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 362, 379, 1295 |
| BseMI | GCAATG | 4 cut(s) | 196, 346, 1051, 2568 |
| BseMII | CTCAG | 4 cut(s) | 503, 783, 2891, 2984 |
| BseNI | ACTGG | 6 cut(s) | 704, 1615, 1759, 2464, 2851, 2875 |
| BseXI | GCAGC | 3 cut(s) | 223, 848, 2165 |
| BsgI | GTGCAG | 2 cut(s) | 117, 855 |
| BshFI | GGCC | 5 cut(s) | 732, 766, 1521, 2010, 2327 |
| BshNI | GGYRCC | 2 cut(s) | 1258, 2138 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1883 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1469, 2792 |
| BslFI | GGGAC | 4 cut(s) | 51, 463, 851, 1790 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 362, 379, 1295 |
| BsmAI | GTCTC | 4 cut(s) | 333, 2222, 2522, 2745 |
| BsmFI | GGGAC | 4 cut(s) | 51, 463, 851, 1790 |
| BsmI | GAATGC | 3 cut(s) | 66, 131, 1026 |
| BsnI | GGCC | 5 cut(s) | 732, 766, 1521, 2010, 2327 |
| BsoBI | CYCGRG | 2 cut(s) | 1469, 2792 |
| Bsp119I | TTCGAA | 1 cut(s) | 2478 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1883, 1985, 2572 |
| Bsp1407I | TGTACA | 1 cut(s) | 435 |
| BspACI | CCGC | 5 cut(s) | 363, 413, 619, 1967, 2815 |
| BspANI | GGCC | 5 cut(s) | 732, 766, 1521, 2010, 2327 |
| BspCNI | CTCAG | 4 cut(s) | 502, 784, 2890, 2985 |
| BspHI | TCATGA | 1 cut(s) | 1203 |
| BspLI | GGNNCC | 9 cut(s) | 141, 624, 909, 1260, 1615, 1778, 1906, 2140, 2569 |
| BspMAI | CTGCAG | 2 cut(s) | 1408, 2405 |
| BspMI | ACCTGC | 3 cut(s) | 89, 101, 1577 |
| BspPI | GGATC | 6 cut(s) | 140, 617, 630, 684, 1001, 1718 |
| BspT104I | TTCGAA | 1 cut(s) | 2478 |
| BspT107I | GGYRCC | 2 cut(s) | 1258, 2138 |
| BspTI | CTTAAG | 1 cut(s) | 2117 |
| BsrDI | GCAATG | 4 cut(s) | 196, 346, 1051, 2568 |
| BsrGI | TGTACA | 1 cut(s) | 435 |
| BsrI | ACTGG | 6 cut(s) | 704, 1615, 1759, 2464, 2851, 2875 |
| BssECI | CCNNGG | 3 cut(s) | 868, 869, 1908 |
| Bst2UI | CCWGG | 4 cut(s) | 443, 870, 1909, 2136 |
| Bst4CI | ACNGT | 5 cut(s) | 388, 539, 1536, 2349, 2367 |
| Bst6I | CTCTTC | 3 cut(s) | 399, 1091, 1110 |
| BstAFI | CTTAAG | 1 cut(s) | 2117 |
| BstAUI | TGTACA | 1 cut(s) | 435 |
| BstBI | TTCGAA | 1 cut(s) | 2478 |
| BstC8I | GCNNGC | 2 cut(s) | 1476, 2813 |
| BstDEI | CTNAG | 6 cut(s) | 489, 792, 2574, 2819, 2877, 2993 |
| BstEII | GGTNACC | 1 cut(s) | 2195 |
| BstF5I | GGATG | 5 cut(s) | 1175, 1285, 1431, 2116, 2769 |
| BstH2I | RGCGCY | 1 cut(s) | 2027 |
| BstHHI | GCGC | 3 cut(s) | 1073, 2026, 2811 |
| BstMAI | GTCTC | 4 cut(s) | 333, 2222, 2522, 2745 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 137, 369, 833, 1068, 2489, 2567, 2815, 2871, 2915 |
| BstNI | CCWGG | 4 cut(s) | 443, 870, 1909, 2136 |
| BstNSI | RCATGY | 5 cut(s) | 647, 827, 1332, 2337, 2502 |
| BstPI | GGTNACC | 1 cut(s) | 2195 |
| BstSCI | CCNGG | 4 cut(s) | 441, 868, 1907, 2134 |
| BstSFI | CTRYAG | 3 cut(s) | 1404, 2401, 2913 |
| BstV1I | GCAGC | 3 cut(s) | 223, 848, 2165 |
| BstV2I | GAAGAC | 1 cut(s) | 1754 |
| BstX2I | RGATCY | 4 cut(s) | 622, 676, 1006, 1106 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1349 |
| BstYI | RGATCY | 4 cut(s) | 622, 676, 1006, 1106 |
| BsuI | GTATCC | 3 cut(s) | 114, 2843, 2974 |
| BsuRI | GGCC | 5 cut(s) | 732, 766, 1521, 2010, 2327 |
| BtsCI | GGATG | 5 cut(s) | 1175, 1285, 1431, 2116, 2769 |
| BtsI | GCAGTG | 3 cut(s) | 2328, 2620, 3031 |
| BtsIMutI | CAGTG | 5 cut(s) | 711, 2328, 2620, 2894, 3031 |
| BveI | ACCTGC | 3 cut(s) | 89, 101, 1577 |
| Cac8I | GCNNGC | 2 cut(s) | 1476, 2813 |
| CaiI | CAGNNNCTG | 1 cut(s) | 863 |
| CciI | TCATGA | 1 cut(s) | 1203 |
| CfoI | GCGC | 3 cut(s) | 1073, 2026, 2811 |
| Cfr13I | GGNCC | 6 cut(s) | 731, 854, 1777, 1826, 2008, 2325 |
| CsiI | ACCWGGT | 1 cut(s) | 2134 |
| Csp6I | GTAC | 4 cut(s) | 436, 2463, 2699, 2745 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 205, 240 |
| CviQI | GTAC | 4 cut(s) | 436, 2463, 2699, 2745 |
| DdeI | CTNAG | 6 cut(s) | 489, 792, 2574, 2819, 2877, 2993 |
| DraIII | CACNNNGTG | 2 cut(s) | 2138, 2172 |
| DriI | GACNNNNNGTC | 1 cut(s) | 456 |
| Eam1104I | CTCTTC | 3 cut(s) | 399, 1091, 1110 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 456 |
| EarI | CTCTTC | 3 cut(s) | 399, 1091, 1110 |
| Ecl136II | GAGCTC | 1 cut(s) | 1881 |
| Eco147I | AGGCCT | 1 cut(s) | 766 |
| Eco24I | GRGCYC | 3 cut(s) | 1883, 1985, 2572 |
| Eco32I | GATATC | 2 cut(s) | 559, 1215 |
| Eco47I | GGWCC | 3 cut(s) | 854, 1777, 1826 |
| Eco53kI | GAGCTC | 1 cut(s) | 1881 |
| Eco57I | CTGAAG | 5 cut(s) | 1131, 2082, 2222, 2777, 3063 |
| Eco88I | CYCGRG | 2 cut(s) | 1469, 2792 |
| Eco91I | GGTNACC | 1 cut(s) | 2195 |
| EcoICRI | GAGCTC | 1 cut(s) | 1881 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1777 |
| EcoO65I | GGTNACC | 1 cut(s) | 2195 |
| EcoRII | CCWGG | 4 cut(s) | 441, 868, 1907, 2134 |
| EcoRV | GATATC | 2 cut(s) | 559, 1215 |
| EcoT22I | ATGCAT | 2 cut(s) | 68, 969 |
| EcoT38I | GRGCYC | 3 cut(s) | 1883, 1985, 2572 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 575, 607, 706, 738 |
| FaqI | GGGAC | 4 cut(s) | 51, 463, 851, 1790 |
| FauI | CCCGC | 2 cut(s) | 356, 612 |
| FauNDI | CATATG | 1 cut(s) | 963 |
| FbaI | TGATCA | 2 cut(s) | 658, 1291 |
| Fnu4HI | GCNGC | 6 cut(s) | 237, 414, 837, 1968, 2154, 2816 |
| FokI | GGATG | 5 cut(s) | 1162, 1272, 1438, 2123, 2776 |
| FriOI | GRGCYC | 3 cut(s) | 1883, 1985, 2572 |
| Fsp4HI | GCNGC | 6 cut(s) | 237, 414, 837, 1968, 2154, 2816 |
| FspBI | CTAG | 5 cut(s) | 41, 456, 779, 1728, 2100 |
| GlaI | GCGC | 3 cut(s) | 1072, 2025, 2810 |
| GluI | GCNGC | 6 cut(s) | 237, 414, 837, 1968, 2154, 2816 |
| HaeII | RGCGCY | 1 cut(s) | 2027 |
| HaeIII | GGCC | 5 cut(s) | 732, 766, 1521, 2010, 2327 |
| HhaI | GCGC | 3 cut(s) | 1073, 2026, 2811 |
| Hin6I | GCGC | 3 cut(s) | 1071, 2024, 2809 |
| HinP1I | GCGC | 3 cut(s) | 1071, 2024, 2809 |
| HincII | GTYRAC | 2 cut(s) | 700, 1809 |
| HindII | GTYRAC | 2 cut(s) | 700, 1809 |
| HindIII | AAGCTT | 3 cut(s) | 720, 1789, 2481 |
| HpaI | GTTAAC | 1 cut(s) | 700 |
| HphI | GGTGA | 9 cut(s) | 98, 195, 551, 668, 751, 1237, 1934, 2119, 2189 |
| Hpy166II | GTNNAC | 7 cut(s) | 700, 709, 1694, 1809, 2216, 2309, 2894 |
| Hpy8I | GTNNAC | 7 cut(s) | 700, 709, 1694, 1809, 2216, 2309, 2894 |
| HpyAV | CCTTC | 8 cut(s) | 403, 1210, 1222, 1767, 1790, 2072, 2545, 2825 |
| HpyCH4III | ACNGT | 5 cut(s) | 388, 539, 1536, 2349, 2367 |
| HpyCH4IV | ACGT | 4 cut(s) | 396, 1321, 1509, 2379 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 137, 369, 833, 1068, 2489, 2567, 2815, 2871, 2915 |
| HpyF3I | CTNAG | 6 cut(s) | 489, 792, 2574, 2819, 2877, 2993 |
| HpySE526I | ACGT | 4 cut(s) | 396, 1321, 1509, 2379 |
| HspAI | GCGC | 3 cut(s) | 1071, 2024, 2809 |
| Ksp22I | TGATCA | 2 cut(s) | 658, 1291 |
| KspAI | GTTAAC | 1 cut(s) | 700 |
| LmnI | GCTCC | 8 cut(s) | 145, 1168, 1202, 1886, 1904, 1912, 2457, 2567 |
| Lsp1109I | GCAGC | 3 cut(s) | 223, 848, 2165 |
| LweI | GCATC | 3 cut(s) | 976, 2101, 2649 |
| MabI | ACCWGGT | 1 cut(s) | 2134 |
| MaeI | CTAG | 5 cut(s) | 41, 456, 779, 1728, 2100 |
| MaeII | ACGT | 4 cut(s) | 396, 1321, 1509, 2379 |
| MflI | RGATCY | 4 cut(s) | 622, 676, 1006, 1106 |
| MhlI | GDGCHC | 3 cut(s) | 1883, 1985, 2572 |
| MlyI | GAGTC | 5 cut(s) | 802, 850, 1804, 2326, 2726 |
| MmeI | TCCRAC | 3 cut(s) | 1082, 2349, 2991 |
| Mph1103I | ATGCAT | 2 cut(s) | 68, 969 |
| MroXI | GAANNNNTTC | 2 cut(s) | 924, 2086 |
| MseI | TTAA | 9 cut(s) | 699, 803, 876, 1512, 1835, 2118, 2249, 2505, 2949 |
| MslI | CAYNNNNRTG | 3 cut(s) | 648, 828, 1299 |
| MspA1I | CMGCKG | 1 cut(s) | 791 |
| MspCI | CTTAAG | 1 cut(s) | 2117 |
| MspR9I | CCNGG | 4 cut(s) | 443, 870, 1909, 2136 |
| Mva1269I | GAATGC | 3 cut(s) | 66, 131, 1026 |
| MvaI | CCWGG | 4 cut(s) | 443, 870, 1909, 2136 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 137, 369, 833, 1068, 2489, 2567, 2815, 2871, 2915 |
| NdeI | CATATG | 1 cut(s) | 963 |
| NlaIV | GGNNCC | 9 cut(s) | 141, 624, 909, 1260, 1615, 1778, 1906, 2140, 2569 |
| NmuCI | GTSAC | 6 cut(s) | 25, 193, 539, 1433, 2195, 3026 |
| NsiI | ATGCAT | 2 cut(s) | 68, 969 |
| NspI | RCATGY | 5 cut(s) | 647, 827, 1332, 2337, 2502 |
| NspV | TTCGAA | 1 cut(s) | 2478 |
| PaeR7I | CTCGAG | 2 cut(s) | 1469, 2792 |
| PagI | TCATGA | 1 cut(s) | 1203 |
| PaqCI | CACCTGC | 1 cut(s) | 89 |
| PasI | CCCWGGG | 1 cut(s) | 869 |
| PceI | AGGCCT | 1 cut(s) | 766 |
| PciI | ACATGT | 2 cut(s) | 1328, 2498 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 141, 2740 |
| PctI | GAATGC | 3 cut(s) | 66, 131, 1026 |
| PdmI | GAANNNNTTC | 2 cut(s) | 924, 2086 |
| PflFI | GACNNNGTC | 1 cut(s) | 325 |
| PkrI | GCNGC | 6 cut(s) | 238, 415, 838, 1969, 2155, 2817 |
| PleI | GAGTC | 5 cut(s) | 802, 849, 1804, 2325, 2725 |
| PpsI | GAGTC | 5 cut(s) | 802, 849, 1804, 2325, 2725 |
| PpuMI | RGGWCCY | 1 cut(s) | 1777 |
| PscI | ACATGT | 2 cut(s) | 1328, 2498 |
| PsiI | TTATAA | 2 cut(s) | 269, 1653 |
| Psp124BI | GAGCTC | 1 cut(s) | 1883 |
| Psp1406I | AACGTT | 2 cut(s) | 1509, 2379 |
| Psp5II | RGGWCCY | 1 cut(s) | 1777 |
| Psp6I | CCWGG | 4 cut(s) | 441, 868, 1907, 2134 |
| PspEI | GGTNACC | 1 cut(s) | 2195 |
| PspGI | CCWGG | 4 cut(s) | 441, 868, 1907, 2134 |
| PspN4I | GGNNCC | 9 cut(s) | 141, 624, 909, 1260, 1615, 1778, 1906, 2140, 2569 |
| PspPI | GGNCC | 6 cut(s) | 731, 854, 1777, 1826, 2008, 2325 |
| PspPPI | RGGWCCY | 1 cut(s) | 1777 |
| PspXI | VCTCGAGB | 2 cut(s) | 1469, 2792 |
| PstI | CTGCAG | 2 cut(s) | 1408, 2405 |
| PstNI | CAGNNNCTG | 1 cut(s) | 863 |
| PsuI | RGATCY | 4 cut(s) | 622, 676, 1006, 1106 |
| PsyI | GACNNNGTC | 1 cut(s) | 325 |
| PvuII | CAGCTG | 1 cut(s) | 791 |
| RsaI | GTAC | 4 cut(s) | 437, 2464, 2700, 2746 |
| RsaNI | GTAC | 4 cut(s) | 436, 2463, 2699, 2745 |
| RseI | CAYNNNNRTG | 3 cut(s) | 648, 828, 1299 |
| SacI | GAGCTC | 1 cut(s) | 1883 |
| SaqAI | TTAA | 9 cut(s) | 699, 803, 876, 1512, 1835, 2118, 2249, 2505, 2949 |
| SatI | GCNGC | 6 cut(s) | 237, 414, 837, 1968, 2154, 2816 |
| Sau96I | GGNCC | 6 cut(s) | 731, 854, 1777, 1826, 2008, 2325 |
| SchI | GAGTC | 5 cut(s) | 802, 850, 1804, 2326, 2726 |
| ScrFI | CCNGG | 4 cut(s) | 443, 870, 1909, 2136 |
| SduI | GDGCHC | 3 cut(s) | 1883, 1985, 2572 |
| SexAI | ACCWGGT | 1 cut(s) | 2134 |
| SfaNI | GCATC | 3 cut(s) | 976, 2101, 2649 |
| SfcI | CTRYAG | 3 cut(s) | 1404, 2401, 2913 |
| Sfr274I | CTCGAG | 2 cut(s) | 1469, 2792 |
| SfuI | TTCGAA | 1 cut(s) | 2478 |
| SinI | GGWCC | 3 cut(s) | 854, 1777, 1826 |
| SlaI | CTCGAG | 2 cut(s) | 1469, 2792 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 648, 828, 1299 |
| SmlI | CTYRAG | 5 cut(s) | 1469, 1874, 2117, 2428, 2792 |
| SmoI | CTYRAG | 5 cut(s) | 1469, 1874, 2117, 2428, 2792 |
| SpeI | ACTAGT | 1 cut(s) | 40 |
| SseBI | AGGCCT | 1 cut(s) | 766 |
| SsiI | CCGC | 5 cut(s) | 363, 413, 619, 1967, 2815 |
| SspMI | CTAG | 5 cut(s) | 41, 456, 779, 1728, 2100 |
| SstI | GAGCTC | 1 cut(s) | 1883 |
| StuI | AGGCCT | 1 cut(s) | 766 |
| StyD4I | CCNGG | 4 cut(s) | 441, 868, 1907, 2134 |
| TaaI | ACNGT | 5 cut(s) | 388, 539, 1536, 2349, 2367 |
| TaiI | ACGT | 4 cut(s) | 399, 1324, 1512, 2382 |
| TaqI | TCGA | 9 cut(s) | 471, 570, 888, 1056, 1470, 1713, 2478, 2621, 2793 |
| TatI | WGTACW | 1 cut(s) | 435 |
| TauI | GCSGC | 3 cut(s) | 416, 1970, 2818 |
| Tru1I | TTAA | 9 cut(s) | 699, 803, 876, 1512, 1835, 2118, 2249, 2505, 2949 |
| Tru9I | TTAA | 9 cut(s) | 699, 803, 876, 1512, 1835, 2118, 2249, 2505, 2949 |
| TscAI | CASTG | 5 cut(s) | 711, 2335, 2620, 2901, 3031 |
| TseFI | GTSAC | 6 cut(s) | 25, 193, 539, 1433, 2195, 3026 |
| TseI | GCWGC | 3 cut(s) | 236, 836, 2153 |
| Tsp45I | GTSAC | 6 cut(s) | 25, 193, 539, 1433, 2195, 3026 |
| TspGWI | ACGGA | 5 cut(s) | 1438, 1478, 1635, 2480, 3027 |
| TspRI | CASTG | 5 cut(s) | 711, 2335, 2620, 2901, 3031 |
| Tth111I | GACNNNGTC | 1 cut(s) | 325 |
| Vha464I | CTTAAG | 1 cut(s) | 2117 |
| VpaK11BI | GGWCC | 3 cut(s) | 854, 1777, 1826 |
| XapI | RAATTY | 7 cut(s) | 302, 511, 1152, 1526, 1717, 1760, 2596 |
| XceI | RCATGY | 5 cut(s) | 647, 827, 1332, 2337, 2502 |
| XhoI | CTCGAG | 2 cut(s) | 1469, 2792 |
| XmnI | GAANNNNTTC | 2 cut(s) | 924, 2086 |
| XspI | CTAG | 5 cut(s) | 41, 456, 779, 1728, 2100 |
| Zsp2I | ATGCAT | 2 cut(s) | 68, 969 |