Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001074

Physical Location & Seq

Genomic Coordinates Forward (+)

44128649 .. 44129973

Gene Structure 1325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG203600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAGCCACAGGAGTGTGCAGCGGACAGATGTCCTGAAATGGATGGATTCTCATACCTCACTCTCAAATCTGGAGGGGTTTTTCTTGCGTCTGCGGCTTGGTAAATCTGAAACAGGACTAGGCGGAACTAGATACTATGTGTCATGTATAACTGGCACAACAGGTTCTCAGAGGGAAAGTCATCCACAAAATGCCAAAAAATCTATATCTGTCATTGTTGGGGAGATTAGATGTGTGGTTGAGGCCCAGTATGTATCCAACCATGATTTCCTTGAGGCTCTCAAATTTACTACCAATGACCTGTACAGTTTGTTGTTTGCAAGTAAGAGAGCTGAAATAAGCGAAAGGCTACCCTGCATTGAGAATGAGAGCTCGACCCATCACTTAAAGATCTTGCAGGAGAGTTGGAAGGAGCCATCAAGTTGGTTGAAGGAAAGCATTTTGTTAAGTTCTGATGATACATATATTCACATGCAGCAACTGCATATGTGCATGTTTTATATTGTATCAGCTTTTGCTCTTTTTAATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plus-3

Protein Analysis

177

Amino Acids

20.25

Weight (kDa)

6.7

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plus-3	PF03126	6 - 92	3.2e-09	Plus-3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43630 AT5G43630 AT5G43630 AT5G43630
fragaria_vesca	FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690
malus_domestica	MD13G1207300.v1.1 MD16G1208700.v1.1
prunus_persica	Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1
pyrus_communis	pycom13g17970 pycom16g17590
rosa_chinensis	RchiOBHm_Chr4g0390511 RchiOBHm_Chr7g0198831
rosa_laevigata	RLG00000009919
rosa_roxburghii	Rroxscaffold_5G00336520
rosa_rugosa	Rorug03G0330900 Rorug03G0330900 Rorug03G0330900 Rorug03G0330900 Rorug03G0331000
rosa_samantha	Rh1CG203600 Rh4AG032400 Rh4BG026400 Rh4CG035900 Rh4DG028900 Rh5AG209700 Rh5CG555900
rosa_wichuraiana	Rw6G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	22, 94, 123
AcsI	RAATTY	1 cut(s)	284
AfaI	GTAC	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	430
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AleI	CACNNNNGTG	1 cut(s)	12
AluBI	AGCT	3 cut(s)	332, 372, 512
AluI	AGCT	3 cut(s)	332, 372, 512
Alw21I	GWGCWC	1 cut(s)	374
AlwNI	CAGNNNCTG	1 cut(s)	481
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	2 cut(s)	19, 475
ApoI	RAATTY	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	374
BbvI	GCAGC	2 cut(s)	31, 487
BccI	CCATC	3 cut(s)	37, 387, 424
BciVI	GTATCC	1 cut(s)	265
BfaI	CTAG	2 cut(s)	119, 129
BfuI	GTATCC	1 cut(s)	265
BglII	AGATCT	1 cut(s)	390
BisI	GCNGC	3 cut(s)	20, 95, 476
BlsI	GCNGC	3 cut(s)	21, 96, 477
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	414
BmrI	ACTGGG	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	241
BoxI	GACNNNNGTC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	293
Bse1I	ACTGG	2 cut(s)	157, 247
BseGI	GGATG	2 cut(s)	48, 181
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	2 cut(s)	157, 247
BseXI	GCAGC	2 cut(s)	31, 487
BsgI	GTGCAG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	390
BspACI	CCGC	3 cut(s)	22, 94, 123
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	414
BsrGI	TGTACA	1 cut(s)	303
BsrI	ACTGG	2 cut(s)	157, 247
BssMI	GATC	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	308
BstAPI	GCANNNNNTGC	1 cut(s)	481
BstAUI	TGTACA	1 cut(s)	303
BstDEI	CTNAG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	48, 181
BstKTI	GATC	1 cut(s)	393
BstMBI	GATC	1 cut(s)	390
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 481
BstNSI	RCATGY	2 cut(s)	475, 496
BstPAI	GACNNNNGTC	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	31, 487
BstX2I	RGATCY	1 cut(s)	390
BstXI	CCANNNNNNTGG	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	390
BsuI	GTATCC	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	245
BtsCI	GGATG	2 cut(s)	48, 181
CaiI	CAGNNNCTG	1 cut(s)	481
Cfr13I	GGNCC	1 cut(s)	244
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	4 cut(s)	144, 263, 472, 493
CviJI	RGCY	9 cut(s)	6, 97, 245, 278, 332, 349, 372, 415, 512
CviKI_1	RGCY	9 cut(s)	6, 97, 245, 278, 332, 349, 372, 415, 512
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	1 cut(s)	392
DpnII	GATC	1 cut(s)	390
EciI	GGCGGA	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	372
Eco24I	GRGCYC	1 cut(s)	374
Eco53kI	GAGCTC	1 cut(s)	372
EcoICRI	GAGCTC	1 cut(s)	372
EcoT38I	GRGCYC	1 cut(s)	374
FaeI	CATG	4 cut(s)	147, 266, 475, 496
FatI	CATG	4 cut(s)	143, 262, 471, 492
FauNDI	CATATG	1 cut(s)	486
Fnu4HI	GCNGC	3 cut(s)	20, 95, 476
FokI	GGATG	2 cut(s)	55, 168
FriOI	GRGCYC	1 cut(s)	374
Fsp4HI	GCNGC	3 cut(s)	20, 95, 476
FspBI	CTAG	2 cut(s)	119, 129
GluI	GCNGC	3 cut(s)	20, 95, 476
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	245
HgaI	GACGC	1 cut(s)	77
Hin1II	CATG	4 cut(s)	147, 266, 475, 496
HinfI	GANTC	1 cut(s)	47
Hpy188I	TCNGA	3 cut(s)	109, 171, 454
Hpy188III	TCNNGA	2 cut(s)	34, 71
HpyAV	CCTTC	2 cut(s)	403, 424
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4V	TGCA	7 cut(s)	19, 320, 357, 397, 475, 484, 492
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 481
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	4 cut(s)	147, 266, 475, 496
Kzo9I	GATC	1 cut(s)	390
LmnI	GCTCC	1 cut(s)	412
LpnPI	CCDG	9 cut(s)	47, 56, 99, 138, 147, 260, 314, 367, 383
Lsp1109I	GCAGC	2 cut(s)	31, 487
MaeI	CTAG	2 cut(s)	119, 129
MalI	GATC	1 cut(s)	392
MboI	GATC	1 cut(s)	390
MflI	RGATCY	1 cut(s)	390
MhlI	GDGCHC	1 cut(s)	374
MluCI	AATT	2 cut(s)	284, 526
MmeI	TCCRAC	2 cut(s)	282, 386
MnlI	CCTC	5 cut(s)	67, 67, 165, 235, 268
MseI	TTAA	3 cut(s)	386, 446, 525
MslI	CAYNNNNRTG	1 cut(s)	12
MspA1I	CMGCKG	1 cut(s)	22
MwoI	GCNNNNNNNGC	2 cut(s)	94, 481
NdeI	CATATG	1 cut(s)	486
NdeII	GATC	1 cut(s)	390
NlaIII	CATG	4 cut(s)	147, 266, 475, 496
NlaIV	GGNNCC	1 cut(s)	414
NspI	RCATGY	2 cut(s)	475, 496
OliI	CACNNNNGTG	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	47
PkrI	GCNGC	3 cut(s)	21, 96, 477
PshAI	GACNNNNGTC	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	374
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	481
PsuI	RGATCY	1 cut(s)	390
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
RseI	CAYNNNNRTG	1 cut(s)	12
SacI	GAGCTC	1 cut(s)	374
SaqAI	TTAA	3 cut(s)	386, 446, 525
SatI	GCNGC	3 cut(s)	20, 95, 476
Sau3AI	GATC	1 cut(s)	390
Sau96I	GGNCC	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	374
SetI	ASST	6 cut(s)	59, 166, 303, 334, 374, 514
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	2 cut(s)	284, 526
SsiI	CCGC	3 cut(s)	22, 94, 123
SspMI	CTAG	2 cut(s)	119, 129
SstI	GAGCTC	1 cut(s)	374
TaaI	ACNGT	1 cut(s)	308
TaqI	TCGA	1 cut(s)	374
TasI	AATT	2 cut(s)	284, 526
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	3 cut(s)	386, 446, 525
Tru9I	TTAA	3 cut(s)	386, 446, 525
TseI	GCWGC	2 cut(s)	19, 475
XapI	RAATTY	1 cut(s)	284
XceI	RCATGY	2 cut(s)	475, 496
XspI	CTAG	2 cut(s)	119, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.