Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001074

Physical Location & Seq

Genomic Coordinates Reverse (-)

24751232 .. 24754268

Gene Structure 3037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG209700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGACGACATCAAGGCAGTCCTCGACCGCAAGGACCACTGCCTCAATGTCAACATCTCCGATCTCCACTTCTTCGGCGACCTCGGCAATAGGCAGATCATTAGAATGTCTGCAGTTCAAACTGAGAAGCCCGGTTTATCCTATGAATCCCTACCGATAAAGCCTCCTTCACATCCAACTTACGATTTGTTGGGTGTCATCAAGTCAGCCCTTGCTGAAGACACTGGGGATCGAGTTGGGAAGTTCAATGAATCAACTTGCTGTACTGAAGCAGGTTCAGCACTCCAACCTGAGATTTTATCTGCAAAAGTTGCCAGTAGTCAAAAGAAAGGCAAATGTGGAGTTAGCTCTACTTCTTCTCTGGGAAAACGTAAGAAAACAATTGTTGAGCATGTTGAATCTGACCCACTGCCTGCAGGAAAGACAACCGTTAAGTTTGATCATCGAAGAGACCTTCTGGGAAGTTTGTGGGTAACTCGCTTTACCCCAAAAATATCAGGTCTATCATTAATGTCATATCGTTACAGTGTTGGTGCAGTTCATGACTGCTCCAATGACAAGAACAATGTCGGGGTGGAGGAACAGTCAGTTGAAGATATAGTTTCTGTCTCCGGTAATGAGCCACAGGAGTGTGCAGCGGACAGATGTCCTGAAGTAAGTAGAGCACCAACTGGCATTTCACTAGTATATTTGGTTTTCTTGGTTCCTATTCTATGGATGGATTCTCATACCTCACTCTCAAATCTGGAGGGGTTTTTCTCACGACTACGGCCTGGTAAATCTGAAACAGGACTAGGCGGAACTAGATACTATGTGTCATGTATAACTGGCACAACAGGTTCTCAGAGGGAAAGTCATCCACAGAATGCCAAAAAATCTATATATGTCATTGTTGGGGAGATTAGATGTGTGGTTGAGGCCCAGTATGTATCCAACCATTATTTCCTTGAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plus-3

Protein Analysis

317

Amino Acids

34.68

Weight (kDa)

6.76

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43630 AT5G43630 AT5G43630 AT5G43630
fragaria_vesca	FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690
malus_domestica	MD13G1207300.v1.1 MD16G1208700.v1.1
prunus_persica	Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1
pyrus_communis	pycom13g17970 pycom16g17590
rosa_chinensis	RchiOBHm_Chr4g0390511 RchiOBHm_Chr7g0198831
rosa_laevigata	RLG00000009919
rosa_roxburghii	Rroxscaffold_5G00336520
rosa_rugosa	Rorug03G0330900 Rorug03G0330900 Rorug03G0330900 Rorug03G0330900 Rorug03G0331000
rosa_samantha	Rh1CG203600 Rh4AG032400 Rh4BG026400 Rh4CG035900 Rh4DG028900 Rh5AG209700 Rh5CG555900
rosa_wichuraiana	Rw6G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	263
AciI	CCGC	3 cut(s)	28, 638, 798
AclWI	GGATC	1 cut(s)	237
AcuI	CTGAAG	3 cut(s)	237, 288, 672
AfaI	GTAC	1 cut(s)	265
AgsI	TTSAA	4 cut(s)	119, 247, 398, 593
AhlI	ACTAGT	1 cut(s)	682
AjnI	CCWGG	1 cut(s)	772
AjuI	GAANNNNNNNTTGG	3 cut(s)	661, 693, 926
AleI	CACNNNNGTG	1 cut(s)	628
AluBI	AGCT	1 cut(s)	348
AluI	AGCT	1 cut(s)	348
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	2 cut(s)	444, 613
AlwI	GGATC	1 cut(s)	237
AoxI	GGCC	2 cut(s)	770, 918
ApeKI	GCWGC	1 cut(s)	635
AseI	ATTAAT	1 cut(s)	509
AspS9I	GGNCC	2 cut(s)	34, 919
AsuC2I	CCSGG	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	667
BbvI	GCAGC	1 cut(s)	647
BccI	CCATC	1 cut(s)	712
BceAI	ACGGC	1 cut(s)	785
BciT130I	CCWGG	1 cut(s)	774
BciVI	GTATCC	1 cut(s)	940
BclI	TGATCA	1 cut(s)	439
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	2 cut(s)	444, 613
BcuI	ACTAGT	1 cut(s)	682
BfaI	CTAG	3 cut(s)	683, 794, 804
BfmI	CTRYAG	2 cut(s)	111, 414
BfuAI	ACCTGC	1 cut(s)	263
BfuI	GTATCC	1 cut(s)	940
BisI	GCNGC	1 cut(s)	636
BlsI	GCNGC	1 cut(s)	637
Bme1390I	CCNGG	2 cut(s)	132, 774
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	34, 919
BmiI	GGNNCC	1 cut(s)	705
BmrFI	CCNGG	2 cut(s)	132, 774
BmrI	ACTGGG	2 cut(s)	234, 916
BmuI	ACTGGG	2 cut(s)	234, 916
BoxI	GACNNNNGTC	1 cut(s)	645
BpiI	GAAGAC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	767
BpuMI	CCSGG	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	444
BsaJI	CCNNGG	1 cut(s)	82
BsaWI	WCCGGW	1 cut(s)	611
BsaXI	ACNNNNNCTCC	2 cut(s)	569, 599
Bse1I	ACTGG	5 cut(s)	229, 315, 676, 832, 922
BseBI	CCWGG	1 cut(s)	774
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	3 cut(s)	172, 723, 856
BseMII	CTCAG	3 cut(s)	114, 282, 857
BseNI	ACTGG	5 cut(s)	229, 315, 676, 832, 922
BseXI	GCAGC	1 cut(s)	647
BsgI	GTGCAG	2 cut(s)	555, 654
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	772, 920
BsiEI	CGRYCG	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	667
BsiSI	CCGG	2 cut(s)	132, 612
BsmAI	GTCTC	2 cut(s)	444, 613
BsmI	GAATGC	1 cut(s)	871
BsnI	GGCC	2 cut(s)	772, 920
Bso31I	GGTCTC	1 cut(s)	444
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp143I	GATC	4 cut(s)	61, 96, 229, 439
BspACI	CCGC	3 cut(s)	28, 638, 798
BspANI	GGCC	2 cut(s)	772, 920
BspCNI	CTCAG	3 cut(s)	115, 283, 856
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	1 cut(s)	705
BspMAI	CTGCAG	2 cut(s)	115, 418
BspMI	ACCTGC	1 cut(s)	263
BspPI	GGATC	1 cut(s)	237
BspTNI	GGTCTC	1 cut(s)	444
BsrI	ACTGG	5 cut(s)	229, 315, 676, 832, 922
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	4 cut(s)	61, 96, 229, 439
Bst2UI	CCWGG	1 cut(s)	774
Bst4CI	ACNGT	3 cut(s)	430, 527, 585
Bst6I	CTCTTC	1 cut(s)	442
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	3 cut(s)	123, 291, 843
BstF5I	GGATG	3 cut(s)	172, 723, 856
BstKTI	GATC	4 cut(s)	64, 99, 232, 442
BstMAI	GTCTC	2 cut(s)	444, 613
BstMBI	GATC	4 cut(s)	61, 96, 229, 439
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 278, 311
BstNI	CCWGG	1 cut(s)	774
BstNSI	RCATGY	1 cut(s)	395
BstPAI	GACNNNNGTC	1 cut(s)	645
BstSCI	CCNGG	2 cut(s)	130, 772
BstSFI	CTRYAG	2 cut(s)	111, 414
BstV1I	GCAGC	1 cut(s)	647
BstV2I	GAAGAC	1 cut(s)	225
BsuI	GTATCC	1 cut(s)	940
BsuRI	GGCC	2 cut(s)	772, 920
BtsCI	GGATG	3 cut(s)	172, 723, 856
BtsI	GCAGTG	2 cut(s)	37, 407
BtsIMutI	CAGTG	4 cut(s)	37, 222, 407, 532
BveI	ACCTGC	1 cut(s)	263
Cac8I	GCNNGC	1 cut(s)	414
CciI	TCATGA	1 cut(s)	541
Cfr13I	GGNCC	2 cut(s)	34, 919
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	3 cut(s)	392, 542, 819
CviJI	RGCY	7 cut(s)	130, 163, 209, 348, 622, 772, 920
CviKI_1	RGCY	7 cut(s)	130, 163, 209, 348, 622, 772, 920
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	3 cut(s)	123, 291, 843
DpnI	GATC	4 cut(s)	63, 98, 231, 441
DpnII	GATC	4 cut(s)	61, 96, 229, 439
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
EciI	GGCGGA	1 cut(s)	813
Eco31I	GGTCTC	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	3 cut(s)	237, 288, 672
EcoRII	CCWGG	1 cut(s)	772
FaeI	CATG	3 cut(s)	395, 545, 822
FatI	CATG	3 cut(s)	391, 541, 818
FbaI	TGATCA	1 cut(s)	439
Fnu4HI	GCNGC	1 cut(s)	636
FokI	GGATG	3 cut(s)	159, 730, 843
Fsp4HI	GCNGC	1 cut(s)	636
FspBI	CTAG	3 cut(s)	683, 794, 804
GluI	GCNGC	1 cut(s)	636
GsuI	CTGGAG	1 cut(s)	767
HaeIII	GGCC	2 cut(s)	772, 920
HapII	CCGG	2 cut(s)	132, 612
Hin1II	CATG	3 cut(s)	395, 545, 822
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	4 cut(s)	146, 251, 398, 722
HpaII	CCGG	2 cut(s)	132, 612
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	4 cut(s)	61, 403, 784, 846
Hpy188III	TCNNGA	4 cut(s)	542, 650, 746, 762
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	177, 464
HpyCH4III	ACNGT	3 cut(s)	430, 527, 585
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	5 cut(s)	113, 305, 416, 536, 635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 278, 311
HpyF3I	CTNAG	3 cut(s)	123, 291, 843
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	3 cut(s)	395, 545, 822
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	4 cut(s)	61, 96, 229, 439
LmnI	GCTCC	1 cut(s)	554
Lsp1109I	GCAGC	1 cut(s)	647
MaeI	CTAG	3 cut(s)	683, 794, 804
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	2 cut(s)	472, 521
MalI	GATC	4 cut(s)	63, 98, 231, 441
MboI	GATC	4 cut(s)	61, 96, 229, 439
MboII	GAAGA	5 cut(s)	64, 230, 348, 459, 605
MfeI	CAATTG	1 cut(s)	381
MhlI	GDGCHC	1 cut(s)	667
MluCI	AATT	1 cut(s)	381
MmeI	TCCRAC	2 cut(s)	200, 310
MnlI	CCTC	9 cut(s)	32, 53, 92, 174, 571, 742, 742, 840, 910
MseI	TTAA	2 cut(s)	432, 509
MslI	CAYNNNNRTG	2 cut(s)	104, 628
MspA1I	CMGCKG	1 cut(s)	638
MspI	CCGG	2 cut(s)	132, 612
MspR9I	CCNGG	2 cut(s)	132, 774
MunI	CAATTG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	871
MvaI	CCWGG	1 cut(s)	774
MwoI	GCNNNNNNNGC	3 cut(s)	84, 278, 311
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	4 cut(s)	61, 96, 229, 439
NlaIII	CATG	3 cut(s)	395, 545, 822
NlaIV	GGNNCC	1 cut(s)	705
NmeAIII	GCCGAG	1 cut(s)	63
NspI	RCATGY	1 cut(s)	395
OliI	CACNNNNGTG	1 cut(s)	628
PagI	TCATGA	1 cut(s)	541
PctI	GAATGC	1 cut(s)	871
PfeI	GAWTC	4 cut(s)	146, 251, 398, 722
PkrI	GCNGC	1 cut(s)	637
PshAI	GACNNNNGTC	1 cut(s)	645
PshBI	ATTAAT	1 cut(s)	509
Psp6I	CCWGG	1 cut(s)	772
PspGI	CCWGG	1 cut(s)	772
PspN4I	GGNNCC	1 cut(s)	705
PspPI	GGNCC	2 cut(s)	34, 919
PstI	CTGCAG	2 cut(s)	115, 418
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
RseI	CAYNNNNRTG	2 cut(s)	104, 628
SaqAI	TTAA	2 cut(s)	432, 509
SatI	GCNGC	1 cut(s)	636
Sau3AI	GATC	4 cut(s)	61, 96, 229, 439
Sau96I	GGNCC	2 cut(s)	34, 919
SbfI	CCTGCAGG	1 cut(s)	418
ScrFI	CCNGG	2 cut(s)	132, 774
SdaI	CCTGCAGG	1 cut(s)	418
SduI	GDGCHC	1 cut(s)	667
SetI	ASST	9 cut(s)	84, 277, 292, 350, 373, 456, 502, 734, 841
SfcI	CTRYAG	2 cut(s)	111, 414
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	2 cut(s)	104, 628
SmlI	CTYRAG	1 cut(s)	947
SmoI	CTYRAG	1 cut(s)	947
SpeI	ACTAGT	1 cut(s)	682
Sse8387I	CCTGCAGG	1 cut(s)	418
Sse9I	AATT	1 cut(s)	381
SsiI	CCGC	3 cut(s)	28, 638, 798
SspMI	CTAG	3 cut(s)	683, 794, 804
StyD4I	CCNGG	2 cut(s)	130, 772
TaaI	ACNGT	3 cut(s)	430, 527, 585
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	3 cut(s)	24, 232, 445
TasI	AATT	1 cut(s)	381
TatI	WGTACW	1 cut(s)	263
TfiI	GAWTC	4 cut(s)	146, 251, 398, 722
Tru1I	TTAA	2 cut(s)	432, 509
Tru9I	TTAA	2 cut(s)	432, 509
TscAI	CASTG	4 cut(s)	44, 229, 414, 532
TseI	GCWGC	1 cut(s)	635
TspDTI	ATGAA	3 cut(s)	159, 264, 530
TspRI	CASTG	4 cut(s)	44, 229, 414, 532
VpaK11BI	GGWCC	1 cut(s)	34
VspI	ATTAAT	1 cut(s)	509
XceI	RCATGY	1 cut(s)	395
XspI	CTAG	3 cut(s)	683, 794, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.