Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001074

Physical Location & Seq

Genomic Coordinates Forward (+)

77427683 .. 77430996

Gene Structure 3314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG555900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTTTCCTGCCCCCAAGTTCGGAGGTTCTGAAGCAATGGCTTCTGTCTTTGCTAGGAGATTAGATGCTCTTAAGCACATCAGCCCATCTGGCATAACAGGTAATGCTGTTGATAAATTCATGACCTGTTTCTTTTGTGGCATAAAAGGTCACCATTTACGAGAGTGTTCGCAGATAAAAGATATTGAACTTCAAGATTTACCAAGTAAATTCAAGTCCTATAATGGAGCAGAGTATTTGTCTTCTTTCTGCATTAGATGTTTTGAATGCAGTCATTGGGCTGTTGCATGTCCTAATGCGACCTCAGTGGGACAACCTCAATTGGAATGTAATTTGTCTTATTACTGCAGTCCTAATCAAACTAAGCTTAACGCAGAAGGAAATATGAAGCTCCTAACTGGTGAAGAGAGTCGATCTGAAGCTTCTGTGGATCAGGATGACTCGAGAATGGAGACAGATCTCAATTTGAGCTGGAAATTAAATTCAGCCTCCAAGAAGATGAGACATTCTTCAAATTCAGTTAAAAGATACAGTGCTTCAAGCTCTGGGAAAAATAACATCAAACAAAAACCGGTCATCCCTTTGTCACAGTTTGTCAATATACTAGTTACATATGTACCTAAAGGAATTTCTGACTCTGTAAAAAGGCTTCGCTTGTCTCGCACAGATGTCCTGAAATGGATGGATTCTCATACCTCACTCTCAAATCTGGAGGGGTTTTTCTTGCGTCTGCGGCTTGGTAAATCTGAAACAGGACTAGGCGGAACTAGATACTATGTGTCATGTATAACTGGTATAACTAAATATTCATCATGCTTGTGTACTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plus-3

Protein Analysis

276

Amino Acids

30.64

Weight (kDa)

9.06

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plus-3	PF03126	214 - 268	1.6e-07	Plus-3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43630 AT5G43630 AT5G43630 AT5G43630
fragaria_vesca	FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690
malus_domestica	MD13G1207300.v1.1 MD16G1208700.v1.1
prunus_persica	Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1
pyrus_communis	pycom13g17970 pycom16g17590
rosa_chinensis	RchiOBHm_Chr4g0390511 RchiOBHm_Chr7g0198831
rosa_laevigata	RLG00000009919
rosa_roxburghii	Rroxscaffold_5G00336520
rosa_rugosa	Rorug03G0330900 Rorug03G0330900 Rorug03G0330900 Rorug03G0330900 Rorug03G0331000
rosa_samantha	Rh1CG203600 Rh4AG032400 Rh4BG026400 Rh4CG035900 Rh4DG028900 Rh5AG209700 Rh5CG555900
rosa_wichuraiana	Rw6G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	733, 762
AclWI	GGATC	1 cut(s)	438
AcsI	RAATTY	5 cut(s)	116, 209, 481, 514, 627
AcuI	CTGAAG	2 cut(s)	51, 438
AfaI	GTAC	2 cut(s)	618, 823
AfiI	CCNNNNNNNGG	1 cut(s)	20
AflII	CTTAAG	1 cut(s)	71
AgeI	ACCGGT	1 cut(s)	571
AgsI	TTSAA	6 cut(s)	188, 194, 214, 266, 513, 540
AhlI	ACTAGT	1 cut(s)	604
AluBI	AGCT	5 cut(s)	367, 391, 422, 471, 543
AluI	AGCT	5 cut(s)	367, 391, 422, 471, 543
Alw26I	GTCTC	3 cut(s)	446, 496, 663
AlwI	GGATC	1 cut(s)	438
Ama87I	CYCGRG	1 cut(s)	442
ApoI	RAATTY	5 cut(s)	116, 209, 481, 514, 627
AsiGI	ACCGGT	1 cut(s)	571
AsuHPI	GGTGA	2 cut(s)	143, 413
AvaI	CYCGRG	1 cut(s)	442
BaeI	ACNNNNGTAYC	2 cut(s)	600, 633
BarI	GAAGNNNNNNTAC	2 cut(s)	633, 665
BbsI	GAAGAC	1 cut(s)	234
BccI	CCATC	2 cut(s)	94, 676
BcoDI	GTCTC	3 cut(s)	446, 496, 663
BcuI	ACTAGT	1 cut(s)	604
BfaI	CTAG	4 cut(s)	54, 605, 758, 768
BfmI	CTRYAG	1 cut(s)	346
BfrI	CTTAAG	1 cut(s)	71
BglI	GCCNNNNNGGC	1 cut(s)	90
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	1 cut(s)	734
BlsI	GCNGC	1 cut(s)	735
BmeT110I	CYCGRG	1 cut(s)	442
BmsI	GCATC	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	731
BsaWI	WCCGGW	1 cut(s)	571
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse118I	RCCGGY	1 cut(s)	571
Bse1I	ACTGG	2 cut(s)	403, 796
Bse3DI	GCAATG	1 cut(s)	42
BseGI	GGATG	3 cut(s)	442, 576, 687
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	2 cut(s)	403, 796
BshTI	ACCGGT	1 cut(s)	571
BsiHKCI	CYCGRG	1 cut(s)	442
BsiSI	CCGG	1 cut(s)	572
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	3 cut(s)	446, 496, 663
BsmFI	GGGAC	1 cut(s)	324
BsmI	GAATGC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	442
Bsp143I	GATC	3 cut(s)	413, 430, 457
BspACI	CCGC	2 cut(s)	733, 762
BspCNI	CTCAG	1 cut(s)	317
BspHI	TCATGA	1 cut(s)	120
BspMAI	CTGCAG	1 cut(s)	350
BspPI	GGATC	1 cut(s)	438
BspTI	CTTAAG	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	571
BsrI	ACTGG	2 cut(s)	403, 796
BssAI	RCCGGY	1 cut(s)	571
BssMI	GATC	3 cut(s)	413, 430, 457
Bst4CI	ACNGT	2 cut(s)	533, 591
Bst6I	CTCTTC	1 cut(s)	399
BstAFI	CTTAAG	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	304, 363
BstEII	GGTNACC	1 cut(s)	149
BstF5I	GGATG	3 cut(s)	442, 576, 687
BstKTI	GATC	3 cut(s)	416, 433, 460
BstMAI	GTCTC	3 cut(s)	446, 496, 663
BstMBI	GATC	3 cut(s)	413, 430, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 660, 733
BstNSI	RCATGY	1 cut(s)	291
BstPI	GGTNACC	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	346
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BtsCI	GGATG	3 cut(s)	442, 576, 687
BtsIMutI	CAGTG	2 cut(s)	312, 538
CciI	TCATGA	1 cut(s)	120
Cfr10I	RCCGGY	1 cut(s)	571
CseI	GACGC	1 cut(s)	716
Csp6I	GTAC	2 cut(s)	617, 822
CspAI	ACCGGT	1 cut(s)	571
CviAII	CATG	4 cut(s)	121, 288, 783, 813
CviQI	GTAC	2 cut(s)	617, 822
DdeI	CTNAG	2 cut(s)	304, 363
DpnI	GATC	3 cut(s)	415, 432, 459
DpnII	GATC	3 cut(s)	413, 430, 457
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
EciI	GGCGGA	1 cut(s)	777
Eco57I	CTGAAG	2 cut(s)	51, 438
Eco88I	CYCGRG	1 cut(s)	442
Eco91I	GGTNACC	1 cut(s)	149
EcoO65I	GGTNACC	1 cut(s)	149
FaeI	CATG	4 cut(s)	124, 291, 786, 816
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	4 cut(s)	120, 287, 782, 812
FauNDI	CATATG	1 cut(s)	613
Fnu4HI	GCNGC	1 cut(s)	734
FokI	GGATG	3 cut(s)	449, 563, 694
Fsp4HI	GCNGC	1 cut(s)	734
FspBI	CTAG	4 cut(s)	54, 605, 758, 768
GluI	GCNGC	1 cut(s)	734
GsuI	CTGGAG	1 cut(s)	731
HapII	CCGG	1 cut(s)	572
HgaI	GACGC	1 cut(s)	716
Hin1II	CATG	4 cut(s)	124, 291, 786, 816
HindIII	AAGCTT	2 cut(s)	365, 420
HinfI	GANTC	4 cut(s)	409, 440, 635, 686
HpaII	CCGG	1 cut(s)	572
HphI	GGTGA	2 cut(s)	143, 413
Hpy166II	GTNNAC	1 cut(s)	822
Hpy188I	TCNGA	5 cut(s)	23, 31, 418, 634, 748
Hpy188III	TCNNGA	6 cut(s)	121, 194, 434, 444, 673, 710
Hpy8I	GTNNAC	1 cut(s)	822
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	2 cut(s)	533, 591
HpyCH4V	TGCA	4 cut(s)	252, 270, 287, 348
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 660, 733
HpyF3I	CTNAG	2 cut(s)	304, 363
Hsp92II	CATG	4 cut(s)	124, 291, 786, 816
Kzo9I	GATC	3 cut(s)	413, 430, 457
LmnI	GCTCC	2 cut(s)	227, 396
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	4 cut(s)	54, 605, 758, 768
MaeIII	GTNAC	3 cut(s)	149, 585, 607
MalI	GATC	3 cut(s)	415, 432, 459
MboI	GATC	3 cut(s)	413, 430, 457
MboII	GAAGA	4 cut(s)	234, 416, 501, 508
MfeI	CAATTG	1 cut(s)	320
MflI	RGATCY	1 cut(s)	457
MluCI	AATT	9 cut(s)	116, 209, 320, 331, 463, 476, 481, 514, 627
MlyI	GAGTC	3 cut(s)	418, 434, 629
MnlI	CCTC	6 cut(s)	17, 313, 327, 499, 706, 706
MseI	TTAA	4 cut(s)	72, 369, 479, 522
MslI	CAYNNNNRTG	1 cut(s)	817
MspCI	CTTAAG	1 cut(s)	71
MspI	CCGG	1 cut(s)	572
MunI	CAATTG	1 cut(s)	320
Mva1269I	GAATGC	1 cut(s)	272
MwoI	GCNNNNNNNGC	3 cut(s)	90, 660, 733
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	3 cut(s)	413, 430, 457
NlaIII	CATG	4 cut(s)	124, 291, 786, 816
NmuCI	GTSAC	2 cut(s)	149, 585
NspI	RCATGY	1 cut(s)	291
PaeR7I	CTCGAG	1 cut(s)	442
PagI	TCATGA	1 cut(s)	120
PctI	GAATGC	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	686
PinAI	ACCGGT	1 cut(s)	571
PkrI	GCNGC	1 cut(s)	735
PleI	GAGTC	3 cut(s)	417, 434, 629
PpsI	GAGTC	3 cut(s)	417, 434, 629
PspEI	GGTNACC	1 cut(s)	149
PstI	CTGCAG	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	457
RsaI	GTAC	2 cut(s)	618, 823
RsaNI	GTAC	2 cut(s)	617, 822
RseI	CAYNNNNRTG	1 cut(s)	817
SaqAI	TTAA	4 cut(s)	72, 369, 479, 522
SatI	GCNGC	1 cut(s)	734
Sau3AI	GATC	3 cut(s)	413, 430, 457
SchI	GAGTC	3 cut(s)	418, 434, 629
SfaNI	GCATC	1 cut(s)	55
SfcI	CTRYAG	1 cut(s)	346
Sfr274I	CTCGAG	1 cut(s)	442
SlaI	CTCGAG	1 cut(s)	442
SmiMI	CAYNNNNRTG	1 cut(s)	817
SmlI	CTYRAG	2 cut(s)	71, 442
SmoI	CTYRAG	2 cut(s)	71, 442
SpeI	ACTAGT	1 cut(s)	604
Sse9I	AATT	9 cut(s)	116, 209, 320, 331, 463, 476, 481, 514, 627
SsiI	CCGC	2 cut(s)	733, 762
SspI	AATATT	1 cut(s)	806
SspMI	CTAG	4 cut(s)	54, 605, 758, 768
TaaI	ACNGT	2 cut(s)	533, 591
TaqI	TCGA	2 cut(s)	412, 443
TasI	AATT	9 cut(s)	116, 209, 320, 331, 463, 476, 481, 514, 627
TatI	WGTACW	1 cut(s)	821
TauI	GCSGC	1 cut(s)	736
TfiI	GAWTC	1 cut(s)	686
Tru1I	TTAA	4 cut(s)	72, 369, 479, 522
Tru9I	TTAA	4 cut(s)	72, 369, 479, 522
TscAI	CASTG	2 cut(s)	312, 538
TseFI	GTSAC	2 cut(s)	149, 585
Tsp45I	GTSAC	2 cut(s)	149, 585
TspDTI	ATGAA	3 cut(s)	109, 401, 798
TspRI	CASTG	2 cut(s)	312, 538
Vha464I	CTTAAG	1 cut(s)	71
XapI	RAATTY	5 cut(s)	116, 209, 481, 514, 627
XceI	RCATGY	1 cut(s)	291
XhoI	CTCGAG	1 cut(s)	442
XspI	CTAG	4 cut(s)	54, 605, 758, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.