Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001074

Physical Location & Seq

Genomic Coordinates Reverse (-)

16836692 .. 16837237

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17791

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTTTCCTGCCCCCAAGTTCGGAGGTTCTGAAGCAATGGCTTCTGTCTTTGCTAGGAGATTAGATGCTCTTAAGCACATCAGCCCATCTGGCATAACAGGTAATGCTGCTGATAAATTCATGACCTGTTTCTTTTGTGGCATAAAAGGTCACCATTTACGAGAGTGTTCGCAGATAAAAAATGCTGAACTTCAGGATTTACCAAGTAAATTCAAGTCCTATAATGGAGCAGAGTATTTGTCTTCTTTCTGCATTAGATGTTTTGAATGCAGTCATTGGGCTGTTGCATGTTCTAATGCGACCTCAGTGGGACAACCTCAATTGGAATGTAATTTGTCTTATTACTACAGTCCTAATCAAACTAAGCTTAACGCAGAAGGAAATATGAAGCTCCTAACTGGTGAAGAGAGTCGATCTAAAGCTTCTGTGGATCAGGATGACTCGAGAGTGGAGACAGATCTCAATTTGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plus-3

Protein Analysis

157

Amino Acids

17.3

Weight (kDa)

6.41

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43630 AT5G43630 AT5G43630 AT5G43630
fragaria_vesca	FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690
malus_domestica	MD13G1207300.v1.1 MD16G1208700.v1.1
prunus_persica	Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1
pyrus_communis	pycom13g17970 pycom16g17590
rosa_chinensis	RchiOBHm_Chr4g0390511 RchiOBHm_Chr7g0198831
rosa_laevigata	RLG00000009919
rosa_roxburghii	Rroxscaffold_5G00336520
rosa_rugosa	Rorug03G0330900 Rorug03G0330900 Rorug03G0330900 Rorug03G0330900 Rorug03G0331000
rosa_samantha	Rh1CG203600 Rh4AG032400 Rh4BG026400 Rh4CG035900 Rh4DG028900 Rh5AG209700 Rh5CG555900
rosa_wichuraiana	Rw6G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	438
AcsI	RAATTY	2 cut(s)	116, 209
AcuI	CTGAAG	2 cut(s)	51, 176
AfiI	CCNNNNNNNGG	1 cut(s)	20
AflII	CTTAAG	1 cut(s)	71
AgsI	TTSAA	2 cut(s)	214, 266
AluBI	AGCT	4 cut(s)	367, 391, 422, 471
AluI	AGCT	4 cut(s)	367, 391, 422, 471
Alw26I	GTCTC	1 cut(s)	446
AlwI	GGATC	1 cut(s)	438
Ama87I	CYCGRG	1 cut(s)	442
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	2 cut(s)	116, 209
AsuHPI	GGTGA	2 cut(s)	143, 413
AvaI	CYCGRG	1 cut(s)	442
BbsI	GAAGAC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	346
BfrI	CTTAAG	1 cut(s)	71
BglI	GCCNNNNNGGC	1 cut(s)	90
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
BmeT110I	CYCGRG	1 cut(s)	442
BmsI	GCATC	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	403
Bse3DI	GCAATG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	403
BseXI	GCAGC	1 cut(s)	94
BsiHKCI	CYCGRG	1 cut(s)	442
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	446
BsmFI	GGGAC	1 cut(s)	324
BsmI	GAATGC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	442
Bsp143I	GATC	3 cut(s)	413, 430, 457
BspCNI	CTCAG	1 cut(s)	317
BspHI	TCATGA	1 cut(s)	120
BspPI	GGATC	1 cut(s)	438
BspTI	CTTAAG	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	403
BssMI	GATC	3 cut(s)	413, 430, 457
Bst4CI	ACNGT	1 cut(s)	350
Bst6I	CTCTTC	1 cut(s)	399
BstAFI	CTTAAG	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	304, 363
BstEII	GGTNACC	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	442
BstKTI	GATC	3 cut(s)	416, 433, 460
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	3 cut(s)	413, 430, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstNSI	RCATGY	1 cut(s)	291
BstPI	GGTNACC	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	346
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BtsCI	GGATG	1 cut(s)	442
BtsIMutI	CAGTG	1 cut(s)	312
CciI	TCATGA	1 cut(s)	120
CviAII	CATG	2 cut(s)	121, 288
CviJI	RGCY	7 cut(s)	41, 84, 281, 367, 391, 422, 471
CviKI_1	RGCY	7 cut(s)	41, 84, 281, 367, 391, 422, 471
DdeI	CTNAG	2 cut(s)	304, 363
DpnI	GATC	3 cut(s)	415, 432, 459
DpnII	GATC	3 cut(s)	413, 430, 457
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco57I	CTGAAG	2 cut(s)	51, 176
Eco88I	CYCGRG	1 cut(s)	442
Eco91I	GGTNACC	1 cut(s)	149
EcoO65I	GGTNACC	1 cut(s)	149
FaeI	CATG	2 cut(s)	124, 291
FaiI	YATR	6 cut(s)	95, 122, 143, 222, 289, 386
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	2 cut(s)	120, 287
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	449
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	124, 291
HindIII	AAGCTT	2 cut(s)	365, 420
HinfI	GANTC	2 cut(s)	409, 440
HphI	GGTGA	2 cut(s)	143, 413
Hpy188I	TCNGA	2 cut(s)	23, 31
Hpy188III	TCNNGA	4 cut(s)	121, 194, 434, 444
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4V	TGCA	3 cut(s)	252, 270, 287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
HpyF3I	CTNAG	2 cut(s)	304, 363
Hsp92II	CATG	2 cut(s)	124, 291
Kzo9I	GATC	3 cut(s)	413, 430, 457
LmnI	GCTCC	2 cut(s)	227, 396
LpnPI	CCDG	7 cut(s)	21, 75, 84, 139, 179, 384, 419
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	3 cut(s)	415, 432, 459
MboI	GATC	3 cut(s)	413, 430, 457
MboII	GAAGA	2 cut(s)	234, 416
MfeI	CAATTG	1 cut(s)	320
MflI	RGATCY	1 cut(s)	457
MluCI	AATT	5 cut(s)	116, 209, 320, 331, 463
MlyI	GAGTC	2 cut(s)	418, 434
MnlI	CCTC	3 cut(s)	17, 313, 327
MseI	TTAA	2 cut(s)	72, 369
MspCI	CTTAAG	1 cut(s)	71
MunI	CAATTG	1 cut(s)	320
Mva1269I	GAATGC	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	90
NdeII	GATC	3 cut(s)	413, 430, 457
NlaIII	CATG	2 cut(s)	124, 291
NmuCI	GTSAC	1 cut(s)	149
NspI	RCATGY	1 cut(s)	291
PaeR7I	CTCGAG	1 cut(s)	442
PagI	TCATGA	1 cut(s)	120
PctI	GAATGC	1 cut(s)	272
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	2 cut(s)	417, 434
PpsI	GAGTC	2 cut(s)	417, 434
PspEI	GGTNACC	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	457
SaqAI	TTAA	2 cut(s)	72, 369
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	3 cut(s)	413, 430, 457
SchI	GAGTC	2 cut(s)	418, 434
SfaNI	GCATC	1 cut(s)	55
SfcI	CTRYAG	1 cut(s)	346
Sfr274I	CTCGAG	1 cut(s)	442
SlaI	CTCGAG	1 cut(s)	442
SmlI	CTYRAG	2 cut(s)	71, 442
SmoI	CTYRAG	2 cut(s)	71, 442
Sse9I	AATT	5 cut(s)	116, 209, 320, 331, 463
SspMI	CTAG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	350
TaqI	TCGA	2 cut(s)	412, 443
TasI	AATT	5 cut(s)	116, 209, 320, 331, 463
Tru1I	TTAA	2 cut(s)	72, 369
Tru9I	TTAA	2 cut(s)	72, 369
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	109, 401
TspRI	CASTG	1 cut(s)	312
Vha464I	CTTAAG	1 cut(s)	71
XapI	RAATTY	2 cut(s)	116, 209
XceI	RCATGY	1 cut(s)	291
XhoI	CTCGAG	1 cut(s)	442
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.