Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001074

Physical Location & Seq

Genomic Coordinates Reverse (-)

39154889 .. 39156003

Gene Structure 1115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G019590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAGCCACAGGAGTGTGCAGCGGACAGATGTCCTGAAATGGATGCATTCTCATACCTCACTCTCAAATCTGGAGGGGTTTTTCTTGCGTCTGCGGCTTGGTAAATCTGAAACAGGACTAGGCGGAACTAGATACTATGTGTCATGTATAACTGGCACAACAGGTTCTCAGAGGGAAAGTCATCCACAGAATGCCAAAAAATCTATATCTGTCATTGTTGGGGAGATTAGATGTGTGGTTGAGGCCCAGTATGTATCCAACCATGATTTCCTTGAGAGAGCTGAAATAAGCGGAAGGCTACCCTGCATTGAGAATGAGAGCTCGACCCATCACTTAAAGATCTTGCAGGAGAGTTGGAAGGAGCCATCAAGTTGGTTGAAGGAAAGCATTTTGTTAAGTTCTGATGATACATATATTCACATGCAGCAACTGCATATGTGCATGTTTTATATTGTATCAGCTTTTGCTCTTTTTAATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plus-3

Protein Analysis

160

Amino Acids

18.28

Weight (kDa)

7.11

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plus-3	PF03126	6 - 92	1.4e-09	Plus-3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43630 AT5G43630 AT5G43630 AT5G43630
fragaria_vesca	FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690 FvH4_4g02690
malus_domestica	MD13G1207300.v1.1 MD16G1208700.v1.1
prunus_persica	Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1 Prupe.1G030800_v2.0.a1
pyrus_communis	pycom13g17970 pycom16g17590
rosa_chinensis	RchiOBHm_Chr4g0390511 RchiOBHm_Chr7g0198831
rosa_laevigata	RLG00000009919
rosa_roxburghii	Rroxscaffold_5G00336520
rosa_rugosa	Rorug03G0330900 Rorug03G0330900 Rorug03G0330900 Rorug03G0330900 Rorug03G0331000
rosa_samantha	Rh1CG203600 Rh4AG032400 Rh4BG026400 Rh4CG035900 Rh4DG028900 Rh5AG209700 Rh5CG555900
rosa_wichuraiana	Rw6G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	22, 94, 123, 291
AgsI	TTSAA	1 cut(s)	379
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AleI	CACNNNNGTG	1 cut(s)	12
AluBI	AGCT	3 cut(s)	281, 321, 461
AluI	AGCT	3 cut(s)	281, 321, 461
Alw21I	GWGCWC	1 cut(s)	323
AlwNI	CAGNNNCTG	1 cut(s)	430
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	2 cut(s)	19, 424
AspS9I	GGNCC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	2 cut(s)	31, 436
BccI	CCATC	2 cut(s)	336, 373
BciVI	GTATCC	1 cut(s)	265
BfaI	CTAG	2 cut(s)	119, 129
BfuI	GTATCC	1 cut(s)	265
BglII	AGATCT	1 cut(s)	339
BisI	GCNGC	3 cut(s)	20, 95, 425
BlsI	GCNGC	3 cut(s)	21, 96, 426
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	363
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	1 cut(s)	33
BmuI	ACTGGG	1 cut(s)	241
BoxI	GACNNNNGTC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	293
Bse1I	ACTGG	2 cut(s)	157, 247
BseGI	GGATG	2 cut(s)	48, 181
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	2 cut(s)	157, 247
BseXI	GCAGC	2 cut(s)	31, 436
BsgI	GTGCAG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	323
BsmI	GAATGC	2 cut(s)	46, 196
BsnI	GGCC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	1 cut(s)	339
BspACI	CCGC	4 cut(s)	22, 94, 123, 291
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	363
BsrI	ACTGG	2 cut(s)	157, 247
BssMI	GATC	1 cut(s)	339
BstAPI	GCANNNNNTGC	1 cut(s)	430
BstDEI	CTNAG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	48, 181
BstKTI	GATC	1 cut(s)	342
BstMBI	GATC	1 cut(s)	339
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 430
BstNSI	RCATGY	2 cut(s)	424, 445
BstPAI	GACNNNNGTC	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	31, 436
BstX2I	RGATCY	1 cut(s)	339
BstXI	CCANNNNNNTGG	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	339
BsuI	GTATCC	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	245
BtsCI	GGATG	2 cut(s)	48, 181
CaiI	CAGNNNCTG	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	244
CseI	GACGC	1 cut(s)	77
CviAII	CATG	4 cut(s)	144, 263, 421, 442
CviJI	RGCY	8 cut(s)	6, 97, 245, 281, 298, 321, 364, 461
CviKI_1	RGCY	8 cut(s)	6, 97, 245, 281, 298, 321, 364, 461
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	1 cut(s)	341
DpnII	GATC	1 cut(s)	339
EciI	GGCGGA	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	323
Eco53kI	GAGCTC	1 cut(s)	321
EcoICRI	GAGCTC	1 cut(s)	321
EcoT22I	ATGCAT	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	323
FaeI	CATG	4 cut(s)	147, 266, 424, 445
FatI	CATG	4 cut(s)	143, 262, 420, 441
FauNDI	CATATG	1 cut(s)	435
Fnu4HI	GCNGC	3 cut(s)	20, 95, 425
FokI	GGATG	2 cut(s)	55, 168
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	3 cut(s)	20, 95, 425
FspBI	CTAG	2 cut(s)	119, 129
GluI	GCNGC	3 cut(s)	20, 95, 425
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	245
HgaI	GACGC	1 cut(s)	77
Hin1II	CATG	4 cut(s)	147, 266, 424, 445
Hpy188I	TCNGA	3 cut(s)	109, 171, 403
Hpy188III	TCNNGA	2 cut(s)	34, 71
HpyAV	CCTTC	3 cut(s)	288, 352, 373
HpyCH4V	TGCA	7 cut(s)	19, 46, 306, 346, 424, 433, 441
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 430
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	4 cut(s)	147, 266, 424, 445
Kzo9I	GATC	1 cut(s)	339
LmnI	GCTCC	1 cut(s)	361
LpnPI	CCDG	8 cut(s)	47, 56, 99, 138, 147, 260, 316, 332
Lsp1109I	GCAGC	2 cut(s)	31, 436
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	2 cut(s)	119, 129
MalI	GATC	1 cut(s)	341
MboI	GATC	1 cut(s)	339
MflI	RGATCY	1 cut(s)	339
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	1 cut(s)	475
MmeI	TCCRAC	2 cut(s)	282, 335
MnlI	CCTC	4 cut(s)	67, 67, 165, 235
Mph1103I	ATGCAT	1 cut(s)	48
MseI	TTAA	3 cut(s)	335, 395, 474
MslI	CAYNNNNRTG	1 cut(s)	12
MspA1I	CMGCKG	1 cut(s)	22
Mva1269I	GAATGC	2 cut(s)	46, 196
MwoI	GCNNNNNNNGC	2 cut(s)	94, 430
NdeI	CATATG	1 cut(s)	435
NdeII	GATC	1 cut(s)	339
NlaIII	CATG	4 cut(s)	147, 266, 424, 445
NlaIV	GGNNCC	1 cut(s)	363
NsiI	ATGCAT	1 cut(s)	48
NspI	RCATGY	2 cut(s)	424, 445
OliI	CACNNNNGTG	1 cut(s)	12
PctI	GAATGC	2 cut(s)	46, 196
PkrI	GCNGC	3 cut(s)	21, 96, 426
PshAI	GACNNNNGTC	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	339
RseI	CAYNNNNRTG	1 cut(s)	12
SacI	GAGCTC	1 cut(s)	323
SaqAI	TTAA	3 cut(s)	335, 395, 474
SatI	GCNGC	3 cut(s)	20, 95, 425
Sau3AI	GATC	1 cut(s)	339
Sau96I	GGNCC	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	5 cut(s)	59, 166, 283, 323, 463
SfaNI	GCATC	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	1 cut(s)	475
SsiI	CCGC	4 cut(s)	22, 94, 123, 291
SspMI	CTAG	2 cut(s)	119, 129
SstI	GAGCTC	1 cut(s)	323
TaqI	TCGA	1 cut(s)	323
TasI	AATT	1 cut(s)	475
TauI	GCSGC	1 cut(s)	97
Tru1I	TTAA	3 cut(s)	335, 395, 474
Tru9I	TTAA	3 cut(s)	335, 395, 474
TseI	GCWGC	2 cut(s)	19, 424
XceI	RCATGY	2 cut(s)	424, 445
XspI	CTAG	2 cut(s)	119, 129
Zsp2I	ATGCAT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.