FvH4_4g03920

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0004450
Physical Location & Seq
Forward (+)
3418287 .. 3421821
3535 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g03920.t1

Sequence Viewer

Length: 2493 bp
ATGATCCTCCATCGTCTCCTCCTCCTTCCAAAGCCGCCGTCCATTCATTCCCTCAAAAACGGGCTACCCAATTCAACAAGATGGTGTTCGTCTTCGCCAAGCAGCGGTACCCAGAAACCACCCAACTCAGGGGTGCAAAGAGCTGTAGCCACCGTGGAGGATTCGGATAACAAATGTGTGGAGAGACATTTGGGGACCTTTCTAAATCCAATCAACTTTCAAGACGACATGGGAAAATCGTGGTTCACCCTGAAAGGAATTTTTTGTAATTTAAAAGCAAAGATGACTGGAACTTCCCAATCTCAGGAGCAAAACAATGTCGAGAGGATTGATTCTGCAGCTGATGAGACGGTTTCTGAGGTTATTAAGACAAAGGATAGTCTACAAGACTGTGAAATTGGCCGGCCCAATCATAGTATTCCAATGCCAAAAGTCATAACGGACTTTCAGATTTGCAAGCAGAATATTTCAACAGGTTTAAGATCTGACATAGTCAGGGATAACTCTTTATCTGATGTGCTTGATGCTACAGTGGTGCCTAAATCTTTAGGTAGCACTGTACCTAGTGATGCTGAAAATGCAATTCACTCCTCAGCAGATATAGTTTTTTCTCCAGAGAATTTGGTTGACGTGACTGTTTCTGCAGTTAGGAAGAAGAGTGTTAGTGAAAATAAATCAATAAGTGTTACGTTGCATACAATGTGGACAAGTTCTATGAGGAATTCAGCTGGTCAGGTTCCATATAATGGTAAAAGGGTGCATGGTGGTCATAAAGATGTTGAACATGGTAGAAAGAAAAGTTTGGATCAAAGCCTGGAAACCTTCGCGGCTTCTCACAATGAGAAAAGGGTTACAGAAACTGCAGCCTCCAATATGATATGGAGAAGTCCTTCCAAGAATAAAGGTCATTCAGAAGGCAAGCCTGAGTCAATAAGGCAACTTGAGCTGGGTGTCTCTGGATCAGATTTTGGCTGTCTGTCTTCCTTAACACATAGGCTACCTGGTGAAGCTTCTAGGAAACTACAAAAGGATATTGGAAATGTATGTACTGTAGTTGGAAATGGAAACCCTCAACAAGGCAAAAGAAAGATATTGGATCAACCCCCTACAGCAGGTTCTGACGTGGGTATGAAGACAATGAATGGCCCCCAACAAGTGCAAGGGTTAGGAAACATAACTATGAAGACAATGAATGGTCAAAAAGATGATGTAATTACCAGTACGAAGAGCAATACTTTAGTTTCAGATGGAGTTTTGAATATGTTCAATGAAACAAATGATAAAACAGGTAATGAATTTTACATCAGTGGCTTGCTTGGGTGCCTTGAGGATATGGCTACAGAATCATCAACGATTACGTCTCAGAATTGTACCAGTCCCAACAATACTGATCTCAGAAAAAAGGTAGGTTCTGTCAAAAAGGTTCGAAGCAGCACAAATGTGCGAGAGAATGATGCTAAAAGAAAAGAAAGTTCGCTGAGAGTTCATGCCATAGGCAAGGAAACTAGTCAGGAAGACTTAAGGATCCCAGGTACTTCCTGCCAAAAAAAAGTATCTACAGAAAGCAAAGTGATGGTTAGATTTTTGCACAAATTTGTACAGGAGAGTTCTATTTATAAAGCCTTTGACGATTGTGGGTGTATCACGAGGATACAACTACTTCCCCTAATTGAAGGAAGCATTTTTAGAGCTGGTTACGTGCATTTTAAGACTGCGGAAGGATCACATAAAGCTCTCAGGAAAAGCGGAATTGTTTCAGAGGGTCATACTGTGGTTGTGGATGCAAATTCTTTAGAAGATGTGCCTAATAAGATTGCCATTCCCAACCTGATTGGCGATCCTGAAGTTCCTCTCATGTTAGTAAAAAGTCCGACACGAACAGTTATGATCAAACAGTTAACCCATGATATAAGCTTACATCAGCTAAAAGAAGCTCTTGCTTTCTGTGGGAGTGGCATATCCAGCGTTTTCTTGGGTTCATCAAGCTCTGTTGCTTATGTGGAATTTGAGACAGAAGATGCCAAAGAGAGAGCAATTGCAGCATATTCCATAAATGTTCAAGAAAAGCAGCTATTGATCTTGAGAATTGATGTGCCAAGAACAACAGTGATAAGGATGACAAGTGTTGATGATGCACTATTTTCTAATACAAAGGTGCTCAGTGATATCGTGTCTGTTTGTTCTTCTTCTGGGGGGGTGGGAAAAGTTAAGCTGAGAAATATGGGCATGCTGGATGTGTATTTCAACCTTGATCATTGGCCAAAGATGTTGAGTATTCTCAACAGGTTAAATGGAATGGAAGTACATGGCCACCGAGTGATTGCTCAACCTGCAACTGTTTTTCCTCCGGCGGTCCTTCAAGTTCTTTGGAGTAAGCCAGATGAAAGAATTCATGTCAAATCTGTTTTGCGCAGATTGTTGCAGAACACTGATCTACCTGTTGAACTCAGTAACCTTGCTACGAAATATCATGGTGATAAATATTTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

831

Amino Acids

90.91

Weight (kDa)

8.88

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 524 - 591 1e-05 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1617
Acc16I TGCGCA 1 cut(s) 2411
Acc36I ACCTGC 2 cut(s) 1103, 2338
Acc65I GGTACC 1 cut(s) 107
AccB1I GGYRCC 3 cut(s) 107, 535, 1320
AccB7I CCANNNNNTGG 1 cut(s) 746
AccI GTMKAC 1 cut(s) 382
AccII CGCG 1 cut(s) 827
AciI CCGC 6 cut(s) 35, 105, 827, 1715, 1746, 2351
AclWI GGATC 7 cut(s) 813, 967, 1104, 1519, 1532, 1729, 1832
AcoI YGGCCR 3 cut(s) 400, 2258, 2308
AcsI RAATTY 8 cut(s) 258, 619, 721, 1295, 1592, 1786, 2003, 2388
AcuI CTGAAG 1 cut(s) 1863
AdeI CACNNNGTG 1 cut(s) 2317
AfaI GTAC 8 cut(s) 109, 561, 1048, 1222, 1372, 1534, 1599, 2304
AfiI CCNNNNNNNGG 7 cut(s) 104, 128, 129, 304, 746, 1076, 1112
AflII CTTAAG 1 cut(s) 1519
AhlI ACTAGT 1 cut(s) 1505
AjiI CACGTC 2 cut(s) 631, 1123
AjnI CCWGG 3 cut(s) 813, 1000, 1528
AleI CACNNNNGTG 1 cut(s) 1439
Alw21I GWGCWC 1 cut(s) 2160
Alw26I GTCTC 6 cut(s) 20, 178, 341, 958, 1365, 2003
AlwI GGATC 7 cut(s) 813, 967, 1104, 1519, 1532, 1729, 1832
AlwNI CAGNNNCTG 2 cut(s) 860, 1118
AoxI GGCC 5 cut(s) 400, 404, 1144, 2258, 2308
ApeKI GCWGC 6 cut(s) 102, 338, 863, 1431, 2039, 2068
ApoI RAATTY 8 cut(s) 258, 619, 721, 1295, 1592, 1786, 2003, 2388
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
Asp700I GAANNNNTTC 4 cut(s) 889, 1262, 1753, 2388
Asp718I GGTACC 1 cut(s) 107
AspLEI GCGC 1 cut(s) 2412
AspS9I GGNCC 4 cut(s) 195, 405, 1145, 2353
AsuHPI GGTGA 3 cut(s) 238, 1016, 2486
AsuII TTCGAA 1 cut(s) 1426
AvaII GGWCC 2 cut(s) 195, 2353
BalI TGGCCA 2 cut(s) 2260, 2310
BamHI GGATCC 1 cut(s) 1524
BanI GGYRCC 3 cut(s) 107, 535, 1320
BauI CACGAG 1 cut(s) 1645
BbsI GAAGAC 5 cut(s) 84, 972, 1139, 1190, 1521
Bbv12I GWGCWC 1 cut(s) 2160
BbvCI CCTCAGC 1 cut(s) 592
BbvI GCAGC 6 cut(s) 114, 350, 875, 1443, 2051, 2080
BccI CCATC 4 cut(s) 18, 75, 1241, 1567
BceAI ACGGC 1 cut(s) 22
BciT130I CCWGG 3 cut(s) 815, 1002, 1530
BciVI GTATCC 1 cut(s) 1644
BclI TGATCA 2 cut(s) 1887, 2251
BcoDI GTCTC 6 cut(s) 20, 178, 341, 958, 1365, 2003
BcuI ACTAGT 1 cut(s) 1505
BfaI CTAG 3 cut(s) 564, 1014, 1506
BfmI CTRYAG 9 cut(s) 144, 336, 528, 642, 861, 1050, 1107, 1338, 1557
BfrI CTTAAG 1 cut(s) 1519
BfuAI ACCTGC 2 cut(s) 1103, 2338
BfuI GTATCC 1 cut(s) 1644
BglII AGATCT 1 cut(s) 482
BisI GCNGC 8 cut(s) 35, 103, 339, 828, 864, 1432, 2040, 2069
BlsI GCNGC 8 cut(s) 36, 104, 340, 829, 865, 1433, 2041, 2070
Bme1390I CCNGG 3 cut(s) 815, 1002, 1530
Bme18I GGWCC 2 cut(s) 195, 2353
BmgBI CACGTC 2 cut(s) 631, 1123
BmgT120I GGNCC 4 cut(s) 195, 405, 1145, 2353
BmiI GGNNCC 7 cut(s) 109, 196, 537, 738, 1147, 1322, 1526
BmrFI CCNGG 3 cut(s) 815, 1002, 1530
BmsI GCATC 6 cut(s) 514, 559, 1444, 1771, 2008, 2122
BpiI GAAGAC 5 cut(s) 84, 972, 1139, 1190, 1521
BpmI CTGGAG 1 cut(s) 597
Bpu10I CCTNAGC 1 cut(s) 592
Bpu14I TTCGAA 1 cut(s) 1426
BpuEI CTTGAG 3 cut(s) 962, 1346, 2101
BsaAI YACGTR 1 cut(s) 1699
BsaJI CCNNGG 2 cut(s) 153, 1528
Bsc4I CCNNNNNNNGG 7 cut(s) 104, 128, 129, 304, 746, 1076, 1112
Bse118I RCCGGY 1 cut(s) 402
Bse1I ACTGG 3 cut(s) 292, 1218, 1374
BseBI CCWGG 3 cut(s) 815, 1002, 1530
BseDI CCNNGG 2 cut(s) 153, 1528
BseGI GGATG 3 cut(s) 1786, 2121, 2239
BseLI CCNNNNNNNGG 7 cut(s) 104, 128, 129, 304, 746, 1076, 1112
BseNI ACTGG 3 cut(s) 292, 1218, 1374
BseRI GAGGAG 3 cut(s) 8, 11, 580
BseXI GCAGC 6 cut(s) 114, 350, 875, 1443, 2051, 2080
BseYI CCCAGC 1 cut(s) 946
Bsh1236I CGCG 1 cut(s) 827
BshFI GGCC 5 cut(s) 402, 406, 1146, 2260, 2310
BshNI GGYRCC 3 cut(s) 107, 535, 1320
BsiHKAI GWGCWC 1 cut(s) 2160
BsiSI CCGG 2 cut(s) 403, 2348
BslFI GGGAC 2 cut(s) 208, 1362
BslI CCNNNNNNNGG 7 cut(s) 104, 128, 129, 304, 746, 1076, 1112
BsmAI GTCTC 6 cut(s) 20, 178, 341, 958, 1365, 2003
BsmBI CGTCTC 3 cut(s) 20, 341, 1365
BsmFI GGGAC 2 cut(s) 208, 1362
BsnI GGCC 5 cut(s) 402, 406, 1146, 2260, 2310
Bsp119I TTCGAA 1 cut(s) 1426
Bsp1286I GDGCHC 1 cut(s) 2160
Bsp1407I TGTACA 1 cut(s) 1597
BspACI CCGC 6 cut(s) 35, 105, 827, 1715, 1746, 2351
BspANI GGCC 5 cut(s) 402, 406, 1146, 2260, 2310
BspFNI CGCG 1 cut(s) 827
BspLI GGNNCC 7 cut(s) 109, 196, 537, 738, 1147, 1322, 1526
BspMAI CTGCAG 3 cut(s) 340, 646, 865
BspMI ACCTGC 2 cut(s) 1103, 2338
BspPI GGATC 7 cut(s) 813, 967, 1104, 1519, 1532, 1729, 1832
BspQI GCTCTTC 1 cut(s) 1220
BspT104I TTCGAA 1 cut(s) 1426
BspT107I GGYRCC 3 cut(s) 107, 535, 1320
BspTI CTTAAG 1 cut(s) 1519
BsrFI RCCGGY 1 cut(s) 402
BsrGI TGTACA 1 cut(s) 1597
BsrI ACTGG 3 cut(s) 292, 1218, 1374
BssAI RCCGGY 1 cut(s) 402
BssECI CCNNGG 2 cut(s) 153, 1528
BssSI CACGAG 1 cut(s) 1645
Bst2BI CACGAG 1 cut(s) 1645
Bst2UI CCWGG 3 cut(s) 815, 1002, 1530
Bst6I CTCTTC 2 cut(s) 650, 1220
BstAFI CTTAAG 1 cut(s) 1519
BstAUI TGTACA 1 cut(s) 1597
BstBAI YACGTR 1 cut(s) 1699
BstBI TTCGAA 1 cut(s) 1426
BstC8I GCNNGC 5 cut(s) 404, 458, 920, 1313, 2228
BstDSI CCRYGG 1 cut(s) 153
BstENI CCTNNNNNAGG 2 cut(s) 1074, 1110
BstF5I GGATG 3 cut(s) 1786, 2121, 2239
BstFNI CGCG 1 cut(s) 827
BstHHI GCGC 1 cut(s) 2412
BstMAI GTCTC 6 cut(s) 20, 178, 341, 958, 1365, 2003
BstMWI GCNNNNNNNGC 5 cut(s) 578, 943, 1962, 2039, 2330
BstNI CCWGG 3 cut(s) 815, 1002, 1530
BstNSI RCATGY 1 cut(s) 2230
BstSCI CCNGG 3 cut(s) 813, 1000, 1528
BstSFI CTRYAG 9 cut(s) 144, 336, 528, 642, 861, 1050, 1107, 1338, 1557
BstUI CGCG 1 cut(s) 827
BstV1I GCAGC 6 cut(s) 114, 350, 875, 1443, 2051, 2080
BstV2I GAAGAC 5 cut(s) 84, 972, 1139, 1190, 1521
BstX2I RGATCY 2 cut(s) 482, 1524
BstYI RGATCY 2 cut(s) 482, 1524
BsuI GTATCC 1 cut(s) 1644
BsuRI GGCC 5 cut(s) 402, 406, 1146, 2260, 2310
BtgI CCRYGG 1 cut(s) 153
BtrI CACGTC 2 cut(s) 631, 1123
BtsCI GGATG 3 cut(s) 1786, 2121, 2239
BtsIMutI CAGTG 6 cut(s) 537, 555, 1312, 2112, 2167, 2427
BveI ACCTGC 2 cut(s) 1103, 2338
Cac8I GCNNGC 5 cut(s) 404, 458, 920, 1313, 2228
CaiI CAGNNNCTG 2 cut(s) 860, 1118
CfoI GCGC 1 cut(s) 2412
Cfr10I RCCGGY 1 cut(s) 402
Cfr13I GGNCC 4 cut(s) 195, 405, 1145, 2353
CsiI ACCWGGT 1 cut(s) 1000
Csp6I GTAC 8 cut(s) 108, 560, 1047, 1221, 1371, 1533, 1598, 2303
CviQI GTAC 8 cut(s) 108, 560, 1047, 1221, 1371, 1533, 1598, 2303
DraI TTTAAA 1 cut(s) 273
DraIII CACNNNGTG 1 cut(s) 2317
EaeI YGGCCR 3 cut(s) 400, 2258, 2308
Eam1104I CTCTTC 2 cut(s) 650, 1220
EarI CTCTTC 2 cut(s) 650, 1220
Eco32I GATATC 1 cut(s) 2167
Eco47I GGWCC 2 cut(s) 195, 2353
Eco57I CTGAAG 1 cut(s) 1863
EcoNI CCTNNNNNAGG 2 cut(s) 1074, 1110
EcoO109I RGGNCCY 1 cut(s) 195
EcoRI GAATTC 2 cut(s) 721, 2388
EcoRII CCWGG 3 cut(s) 813, 1000, 1528
EcoRV GATATC 1 cut(s) 2167
Esp3I CGTCTC 3 cut(s) 20, 341, 1365
FalI AAGNNNNNCTT 2 cut(s) 1920, 1952
FaqI GGGAC 2 cut(s) 208, 1362
FbaI TGATCA 2 cut(s) 1887, 2251
FblI GTMKAC 1 cut(s) 382
Fnu4HI GCNGC 8 cut(s) 35, 103, 339, 828, 864, 1432, 2040, 2069
FokI GGATG 3 cut(s) 1793, 2128, 2246
FseI GGCCGGCC 1 cut(s) 406
Fsp4HI GCNGC 8 cut(s) 35, 103, 339, 828, 864, 1432, 2040, 2069
FspBI CTAG 3 cut(s) 564, 1014, 1506
FspI TGCGCA 1 cut(s) 2411
GlaI GCGC 1 cut(s) 2411
GluI GCNGC 8 cut(s) 35, 103, 339, 828, 864, 1432, 2040, 2069
GsaI CCCAGC 1 cut(s) 950
GsuI CTGGAG 1 cut(s) 597
HaeIII GGCC 5 cut(s) 402, 406, 1146, 2260, 2310
HapII CCGG 2 cut(s) 403, 2348
HhaI GCGC 1 cut(s) 2412
Hin6I GCGC 1 cut(s) 2410
HinP1I GCGC 1 cut(s) 2410
HincII GTYRAC 2 cut(s) 628, 1899
HindII GTYRAC 2 cut(s) 628, 1899
HindIII AAGCTT 2 cut(s) 1008, 1912
HinfI GANTC 4 cut(s) 161, 332, 926, 1343
HpaI GTTAAC 1 cut(s) 1899
HpaII CCGG 2 cut(s) 403, 2348
HphI GGTGA 3 cut(s) 238, 1016, 2486
Hpy166II GTNNAC 5 cut(s) 246, 383, 628, 705, 1899
Hpy8I GTNNAC 5 cut(s) 246, 383, 628, 705, 1899
HpyAV CCTTC 7 cut(s) 35, 832, 900, 908, 1667, 1712, 2366
HpyCH4IV ACGT 5 cut(s) 630, 689, 1122, 1358, 1698
HpyF10VI GCNNNNNNNGC 5 cut(s) 578, 943, 1962, 2039, 2330
HpySE526I ACGT 5 cut(s) 630, 689, 1122, 1358, 1698
HspAI GCGC 1 cut(s) 2410
KpnI GGTACC 1 cut(s) 111
KroI GCCGGC 1 cut(s) 402
KroNI GCCGGC 1 cut(s) 404
Ksp22I TGATCA 2 cut(s) 1887, 2251
KspAI GTTAAC 1 cut(s) 1899
LguI GCTCTTC 1 cut(s) 1220
LmnI GCTCC 1 cut(s) 307
Lsp1109I GCAGC 6 cut(s) 114, 350, 875, 1443, 2051, 2080
LweI GCATC 6 cut(s) 514, 559, 1444, 1771, 2008, 2122
MabI ACCWGGT 1 cut(s) 1000
MaeI CTAG 3 cut(s) 564, 1014, 1506
MaeII ACGT 5 cut(s) 630, 689, 1122, 1358, 1698
MaeIII GTNAC 5 cut(s) 631, 685, 850, 1694, 2450
MfeI CAATTG 1 cut(s) 2034
MflI RGATCY 2 cut(s) 482, 1524
MhlI GDGCHC 1 cut(s) 2160
MlsI TGGCCA 2 cut(s) 2260, 2310
MluNI TGGCCA 2 cut(s) 2260, 2310
MlyI GAGTC 1 cut(s) 935
MmeI TCCRAC 2 cut(s) 1036, 1895
Mox20I TGGCCA 2 cut(s) 2260, 2310
MroNI GCCGGC 1 cut(s) 402
MroXI GAANNNNTTC 4 cut(s) 889, 1262, 1753, 2388
MscI TGGCCA 2 cut(s) 2260, 2310
MseI TTAA 9 cut(s) 272, 366, 479, 986, 1520, 1707, 1898, 2208, 2288
MslI CAYNNNNRTG 3 cut(s) 774, 1178, 1439
Msp20I TGGCCA 2 cut(s) 2260, 2310
MspA1I CMGCKG 3 cut(s) 105, 341, 728
MspCI CTTAAG 1 cut(s) 1519
MspI CCGG 2 cut(s) 403, 2348
MspR9I CCNGG 3 cut(s) 815, 1002, 1530
MunI CAATTG 1 cut(s) 2034
MvaI CCWGG 3 cut(s) 815, 1002, 1530
MvnI CGCG 1 cut(s) 827
MwoI GCNNNNNNNGC 5 cut(s) 578, 943, 1962, 2039, 2330
NaeI GCCGGC 1 cut(s) 404
NgoMIV GCCGGC 1 cut(s) 402
NlaIV GGNNCC 7 cut(s) 109, 196, 537, 738, 1147, 1322, 1526
NmuCI GTSAC 1 cut(s) 631
NsbI TGCGCA 1 cut(s) 2411
NspI RCATGY 1 cut(s) 2230
NspV TTCGAA 1 cut(s) 1426
OliI CACNNNNGTG 1 cut(s) 1439
PaeI GCATGC 1 cut(s) 2230
PciSI GCTCTTC 1 cut(s) 1220
PdiI GCCGGC 1 cut(s) 404
PdmI GAANNNNTTC 4 cut(s) 889, 1262, 1753, 2388
PfeI GAWTC 3 cut(s) 161, 332, 1343
PflFI GACNNNGTC 1 cut(s) 491
PflMI CCANNNNNTGG 1 cut(s) 746
PkrI GCNGC 8 cut(s) 36, 104, 340, 829, 865, 1433, 2041, 2070
PleI GAGTC 1 cut(s) 934
PpsI GAGTC 1 cut(s) 934
Ppu21I YACGTR 1 cut(s) 1699
PpuMI RGGWCCY 1 cut(s) 195
PsiI TTATAA 1 cut(s) 1617
Psp5II RGGWCCY 1 cut(s) 195
Psp6I CCWGG 3 cut(s) 813, 1000, 1528
PspFI CCCAGC 1 cut(s) 946
PspGI CCWGG 3 cut(s) 813, 1000, 1528
PspN4I GGNNCC 7 cut(s) 109, 196, 537, 738, 1147, 1322, 1526
PspPI GGNCC 4 cut(s) 195, 405, 1145, 2353
PspPPI RGGWCCY 1 cut(s) 195
PstI CTGCAG 3 cut(s) 340, 646, 865
PstNI CAGNNNCTG 2 cut(s) 860, 1118
PsuI RGATCY 2 cut(s) 482, 1524
PsyI GACNNNGTC 1 cut(s) 491
PvuII CAGCTG 2 cut(s) 341, 728
RigI GGCCGGCC 1 cut(s) 406
RsaI GTAC 8 cut(s) 109, 561, 1048, 1222, 1372, 1534, 1599, 2304
RsaNI GTAC 8 cut(s) 108, 560, 1047, 1221, 1371, 1533, 1598, 2303
RseI CAYNNNNRTG 3 cut(s) 774, 1178, 1439
SapI GCTCTTC 1 cut(s) 1220
SaqAI TTAA 9 cut(s) 272, 366, 479, 986, 1520, 1707, 1898, 2208, 2288
SatI GCNGC 8 cut(s) 35, 103, 339, 828, 864, 1432, 2040, 2069
Sau96I GGNCC 4 cut(s) 195, 405, 1145, 2353
SchI GAGTC 1 cut(s) 935
ScrFI CCNGG 3 cut(s) 815, 1002, 1530
SduI GDGCHC 1 cut(s) 2160
SexAI ACCWGGT 1 cut(s) 1000
SfaNI GCATC 6 cut(s) 514, 559, 1444, 1771, 2008, 2122
SfcI CTRYAG 9 cut(s) 144, 336, 528, 642, 861, 1050, 1107, 1338, 1557
SfuI TTCGAA 1 cut(s) 1426
SinI GGWCC 2 cut(s) 195, 2353
SmiMI CAYNNNNRTG 3 cut(s) 774, 1178, 1439
SmlI CTYRAG 4 cut(s) 941, 1325, 1519, 2080
SmoI CTYRAG 4 cut(s) 941, 1325, 1519, 2080
SpeI ACTAGT 1 cut(s) 1505
SphI GCATGC 1 cut(s) 2230
SsiI CCGC 6 cut(s) 35, 105, 827, 1715, 1746, 2351
SspI AATATT 2 cut(s) 466, 2483
SspMI CTAG 3 cut(s) 564, 1014, 1506
StyD4I CCNGG 3 cut(s) 813, 1000, 1528
TaiI ACGT 5 cut(s) 633, 692, 1125, 1361, 1701
TaqI TCGA 2 cut(s) 321, 1426
TatI WGTACW 3 cut(s) 1046, 1597, 2302
TauI GCSGC 2 cut(s) 37, 830
TfiI GAWTC 3 cut(s) 161, 332, 1343
Tru1I TTAA 9 cut(s) 272, 366, 479, 986, 1520, 1707, 1898, 2208, 2288
Tru9I TTAA 9 cut(s) 272, 366, 479, 986, 1520, 1707, 1898, 2208, 2288
TscAI CASTG 6 cut(s) 537, 562, 1312, 2112, 2167, 2434
TseFI GTSAC 1 cut(s) 631
TseI GCWGC 6 cut(s) 102, 338, 863, 1431, 2039, 2068
Tsp45I GTSAC 1 cut(s) 631
TspGWI ACGGA 1 cut(s) 455
TspRI CASTG 6 cut(s) 537, 562, 1312, 2112, 2167, 2434
Tth111I GACNNNGTC 1 cut(s) 491
Van91I CCANNNNNTGG 1 cut(s) 746
Vha464I CTTAAG 1 cut(s) 1519
VpaK11BI GGWCC 2 cut(s) 195, 2353
XagI CCTNNNNNAGG 2 cut(s) 1074, 1110
XapI RAATTY 8 cut(s) 258, 619, 721, 1295, 1592, 1786, 2003, 2388
XceI RCATGY 1 cut(s) 2230
XcmI CCANNNNNNNNNTGG 1 cut(s) 1969
XmiI GTMKAC 1 cut(s) 382
XmnI GAANNNNTTC 4 cut(s) 889, 1262, 1753, 2388
XspI CTAG 3 cut(s) 564, 1014, 1506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.