Rroxscaffold_4G00325220

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
56963400 .. 56974613
11214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00325220.1

Sequence Viewer

Length: 1725 bp
ATGCTCTCGGCAGTGTCGGCGGCTTCTCGGCGCCTTTCGGCAGGTCTCGGCAGGGGCTTTCGGCGCCTTCTCGGCGAGTCTCGGCAGATCCGCTCAACGTGTCTCTCAGCTTCGCTCGGCGGTGCTTTCCGCATCTCGGCAGGACTCGGTAGCGATATCGGGAACAGTGTGTTAGCAAAATCTGCAAGTATTTCAAATTCAGGAGTTTGCATTATTGCATTGTTAGGTTGCATTGTTGTTCTTGATATTCTACGAATTATGCAATGTGCTTGTGATGGCACCAAAACCTGTATCAAGAGGAATTTGCATTTTGATCTCTCTGTTAGCATCTACAACTCCAGCCCTGGAACATTTCCTGGGGTTAGAAAGACGGATGAGTATTTCAAAGCTTATTACGCTGCATTAAGAAAAAGAATAAGAAGCAGCAGCAGCAAAGAGTTGTCAGGTTGGCATGAAGTCAAAACTTCGAAGGTGGAAAACAAGATAATGTTGATTGGGAAGAGGCTCCGGTTGCAGGGACCTCCAAGGAGGAGGACACTACAATCAGAGTCCAAGGTTCAGAACTATGAACCTGCAACCATGAAATACTTTGGATATCACCCTGCATTGACACTTGATGAGGTTTTGGGGAGGTTCAATCGTGCTCGTGCAGCTCAACTGACACTACCTCACTTTGTATGTCAGACTCCTCTTTTCATGCCTGTTGGAACACAAGTTTTACATCAGTGCCTTATTACTGATCGGGCAAACTTGATATTTTACTTGTATTGCAGCTATGCCATAGGCGGTCTTGAGGGTGGCGAAAGGCGTTGGTTATCCATTGGACATTGTAGTTTGCAGTGCTTTAGTGCTTACTCTAATGCCTTATTGAGCAATGGTTGTATTCTACAAAATGGCAATGGAAGTTTTTCTCAACCCAATAATGGCTTCATTCAGAAAAATTGTGGCTCTCAGCAAAACAATGGTCTTCAACCAACTGGTATTTTCCTGCATCAGCCTAATGGATTTTCACAGCCGAATTTCATTACTTCTTATGCAAACAGTGGAACTATGCAGCAATTTAATTTTCAGCCAGATTGCTCTATGCTAAATGGAGTTGTATATAATGCTGTTGGGATTGGATATCATAATGCATGTGCTACTAGTGCTGTGATGAGTAATAGAAAATATGTGCCTACTTCTAGCACGGAAGAAATGGAAACCAAGAAAGAGTTGCTTTCAATTGAGAAAGACATATTGGCATCAGAAACTATACAAGACACTGTTGTTGGAGACACATCGGATGCATACATGCCTGGGCTTTCATCTAAGCTTGTGCTTGATAAAACTAAGCAATTGTATAAGGAACTGTCAGATATCCAATCTCAATATGATCGGATCTCTCAGAGCTGCAAGCAGAATATTTCAACAGATTTAAGATTCACACATGGTATAGAAAAACCATATGAGGTGAGGCGACTAAACTCAAATAAAGCACTTCAGCTGTTTAGTTTGAAAGCCTTTAGGAAATATGAGCCGGAAGAAGAATACATAGAGCTCTTTGAGCGTTTCGTTATCTATGCCAGAGGTCTTCTCTTAGCTCTTAAAACTTTGGGGTCTTTCTTGTATAAAAGAAGTCCAGATGCGTGGAGTTCTGCATTGGAAAAACTATGGAATACTCCCAACAGAACAAATTTTGACTTGCTAAAAGGAACAGAAGCCATTGAAGGCATATTGTTATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

574

Amino Acids

63.84

Weight (kDa)

9.27

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 32, 580
AccB1I GGYRCC 3 cut(s) 30, 63, 278
AccBSI CCGCTC 1 cut(s) 93
AciI CCGC 5 cut(s) 20, 91, 120, 130, 786
AclWI GGATC 2 cut(s) 82, 1385
AcsI RAATTY 4 cut(s) 196, 301, 1018, 1672
AcuI CTGAAG 1 cut(s) 1463
AcyI GRCGYC 2 cut(s) 31, 64
AfiI CCNNNNNNNGG 3 cut(s) 136, 514, 923
AflIII ACRYGT 1 cut(s) 98
AgsI TTSAA 8 cut(s) 195, 385, 637, 971, 1221, 1407, 1495, 1706
AhlI ACTAGT 1 cut(s) 1142
AjnI CCWGG 3 cut(s) 343, 355, 1294
AjuI GAANNNNNNNTTGG 4 cut(s) 911, 943, 1220, 1252
AluBI AGCT 9 cut(s) 110, 389, 653, 774, 1312, 1389, 1483, 1537, 1580
AluI AGCT 9 cut(s) 110, 389, 653, 774, 1312, 1389, 1483, 1537, 1580
Alw21I GWGCWC 2 cut(s) 646, 1539
Alw26I GTCTC 4 cut(s) 50, 84, 107, 1266
AlwI GGATC 2 cut(s) 82, 1385
ApeKI GCWGC 8 cut(s) 398, 423, 426, 429, 650, 771, 1054, 1389
ApoI RAATTY 4 cut(s) 196, 301, 1018, 1672
ArsI GACNNNNNNTTYG 2 cut(s) 949, 981
Asp700I GAANNNNTTC 1 cut(s) 907
AspLEI GCGC 2 cut(s) 33, 66
AspS9I GGNCC 1 cut(s) 518
AsuHPI GGTGA 2 cut(s) 590, 1462
AsuII TTCGAA 1 cut(s) 467
AvaII GGWCC 1 cut(s) 518
BanI GGYRCC 3 cut(s) 30, 63, 278
BanII GRGCYC 1 cut(s) 1539
BauI CACGAG 1 cut(s) 645
BbsI GAAGAC 2 cut(s) 959, 1562
Bbv12I GWGCWC 2 cut(s) 646, 1539
BbvI GCAGC 8 cut(s) 385, 435, 438, 441, 662, 783, 1066, 1376
BccI CCATC 1 cut(s) 269
BciT130I CCWGG 3 cut(s) 345, 357, 1296
BcoDI GTCTC 4 cut(s) 50, 84, 107, 1266
BcuI ACTAGT 1 cut(s) 1142
BfaI CTAG 3 cut(s) 1143, 1182, 1723
BfoI RGCGCY 2 cut(s) 34, 67
BfuAI ACCTGC 2 cut(s) 32, 580
BglI GCCNNNNNGGC 1 cut(s) 72
BisI GCNGC 9 cut(s) 21, 399, 424, 427, 430, 651, 772, 1055, 1390
BlsI GCNGC 9 cut(s) 22, 400, 425, 428, 431, 652, 773, 1056, 1391
Bme1390I CCNGG 3 cut(s) 345, 357, 1296
Bme18I GGWCC 1 cut(s) 518
BmgT120I GGNCC 1 cut(s) 518
BmiI GGNNCC 5 cut(s) 32, 65, 280, 506, 519
BmrFI CCNGG 3 cut(s) 345, 357, 1296
BmsI GCATC 6 cut(s) 141, 336, 1000, 1250, 1273, 1612
BpiI GAAGAC 2 cut(s) 959, 1562
BplI GAGNNNNNCTC 2 cut(s) 1557, 1589
BpmI CTGGAG 1 cut(s) 322
Bpu14I TTCGAA 1 cut(s) 467
BpuEI CTTGAG 1 cut(s) 812
BsaHI GRCGYC 2 cut(s) 31, 64
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 5 cut(s) 343, 356, 524, 552, 1295
BsaWI WCCGGW 1 cut(s) 507
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 514, 923
Bse1I ACTGG 1 cut(s) 982
Bse3DI GCAATG 3 cut(s) 269, 880, 904
BseBI CCWGG 3 cut(s) 345, 357, 1296
BseDI CCNNGG 5 cut(s) 343, 356, 524, 552, 1295
BseGI GGATG 2 cut(s) 379, 1288
BseLI CCNNNNNNNGG 3 cut(s) 136, 514, 923
BseMI GCAATG 3 cut(s) 269, 880, 904
BseMII CTCAG 3 cut(s) 120, 965, 1397
BseNI ACTGG 1 cut(s) 982
BseRI GAGGAG 2 cut(s) 544, 678
BseXI GCAGC 8 cut(s) 385, 435, 438, 441, 662, 783, 1066, 1376
BsgI GTGCAG 1 cut(s) 669
BshNI GGYRCC 3 cut(s) 30, 63, 278
BsiHKAI GWGCWC 2 cut(s) 646, 1539
BsiSI CCGG 2 cut(s) 508, 1517
BslFI GGGAC 1 cut(s) 531
BslI CCNNNNNNNGG 3 cut(s) 136, 514, 923
BsmAI GTCTC 4 cut(s) 50, 84, 107, 1266
BsmFI GGGAC 1 cut(s) 531
Bso31I GGTCTC 1 cut(s) 50
Bsp119I TTCGAA 1 cut(s) 467
Bsp1286I GDGCHC 2 cut(s) 646, 1539
Bsp143I GATC 5 cut(s) 87, 313, 739, 1372, 1377
BspACI CCGC 5 cut(s) 20, 91, 120, 130, 786
BspCNI CTCAG 3 cut(s) 119, 964, 1396
BspLI GGNNCC 5 cut(s) 32, 65, 280, 506, 519
BspMI ACCTGC 2 cut(s) 32, 580
BspPI GGATC 2 cut(s) 82, 1385
BspT104I TTCGAA 1 cut(s) 467
BspT107I GGYRCC 3 cut(s) 30, 63, 278
BspTNI GGTCTC 1 cut(s) 50
BsrBI CCGCTC 1 cut(s) 93
BsrDI GCAATG 3 cut(s) 269, 880, 904
BsrI ACTGG 1 cut(s) 982
BssECI CCNNGG 5 cut(s) 343, 356, 524, 552, 1295
BssMI GATC 5 cut(s) 87, 313, 739, 1372, 1377
BssNI GRCGYC 2 cut(s) 31, 64
BssSI CACGAG 1 cut(s) 645
BssT1I CCWWGG 2 cut(s) 524, 552
Bst2BI CACGAG 1 cut(s) 645
Bst2UI CCWGG 3 cut(s) 345, 357, 1296
Bst4CI ACNGT 4 cut(s) 167, 1043, 1264, 1350
Bst6I CTCTTC 1 cut(s) 494
BstACI GRCGYC 2 cut(s) 31, 64
BstAPI GCANNNNNTGC 1 cut(s) 182
BstBI TTCGAA 1 cut(s) 467
BstC8I GCNNGC 1 cut(s) 1394
BstDEI CTNAG 6 cut(s) 106, 951, 1308, 1329, 1383, 1576
BstF5I GGATG 2 cut(s) 379, 1288
BstH2I RGCGCY 2 cut(s) 34, 67
BstHHI GCGC 2 cut(s) 33, 66
BstKTI GATC 5 cut(s) 90, 316, 742, 1375, 1380
BstMAI GTCTC 4 cut(s) 50, 84, 107, 1266
BstMBI GATC 5 cut(s) 87, 313, 739, 1372, 1377
BstNI CCWGG 3 cut(s) 345, 357, 1296
BstNSI RCATGY 2 cut(s) 1137, 1294
BstSCI CCNGG 3 cut(s) 343, 355, 1294
BstV1I GCAGC 8 cut(s) 385, 435, 438, 441, 662, 783, 1066, 1376
BstV2I GAAGAC 2 cut(s) 959, 1562
BstX2I RGATCY 2 cut(s) 87, 1377
BstXI CCANNNNNNTGG 1 cut(s) 1626
BstYI RGATCY 2 cut(s) 87, 1377
BtsCI GGATG 2 cut(s) 379, 1288
BtsI GCAGTG 2 cut(s) 18, 845
BtsIMutI CAGTG 6 cut(s) 18, 172, 731, 845, 1048, 1260
BveI ACCTGC 2 cut(s) 32, 580
Cac8I GCNNGC 1 cut(s) 1394
CfoI GCGC 2 cut(s) 33, 66
Cfr13I GGNCC 1 cut(s) 518
CviAII CATG 6 cut(s) 452, 580, 697, 1134, 1291, 1427
DdeI CTNAG 6 cut(s) 106, 951, 1308, 1329, 1383, 1576
DinI GGCGCC 2 cut(s) 32, 65
DpnI GATC 5 cut(s) 89, 315, 741, 1374, 1379
DpnII GATC 5 cut(s) 87, 313, 739, 1372, 1377
Eam1104I CTCTTC 1 cut(s) 494
EarI CTCTTC 1 cut(s) 494
Ecl136II GAGCTC 1 cut(s) 1537
Eco130I CCWWGG 2 cut(s) 524, 552
Eco24I GRGCYC 1 cut(s) 1539
Eco31I GGTCTC 1 cut(s) 50
Eco32I GATATC 4 cut(s) 157, 596, 1124, 1357
Eco47I GGWCC 1 cut(s) 518
Eco53kI GAGCTC 1 cut(s) 1537
Eco57I CTGAAG 1 cut(s) 1463
EcoICRI GAGCTC 1 cut(s) 1537
EcoO109I RGGNCCY 1 cut(s) 518
EcoRII CCWGG 3 cut(s) 343, 355, 1294
EcoRV GATATC 4 cut(s) 157, 596, 1124, 1357
EcoT14I CCWWGG 2 cut(s) 524, 552
EcoT22I ATGCAT 2 cut(s) 1135, 1288
EcoT38I GRGCYC 1 cut(s) 1539
EgeI GGCGCC 2 cut(s) 32, 65
EheI GGCGCC 2 cut(s) 32, 65
ErhI CCWWGG 2 cut(s) 524, 552
FaeI CATG 6 cut(s) 455, 583, 700, 1137, 1294, 1430
FalI AAGNNNNNCTT 2 cut(s) 1200, 1232
FaqI GGGAC 1 cut(s) 531
FatI CATG 6 cut(s) 451, 579, 696, 1133, 1290, 1426
FauNDI CATATG 1 cut(s) 1444
Fnu4HI GCNGC 9 cut(s) 21, 399, 424, 427, 430, 651, 772, 1055, 1390
FokI GGATG 2 cut(s) 386, 1295
FriOI GRGCYC 1 cut(s) 1539
Fsp4HI GCNGC 9 cut(s) 21, 399, 424, 427, 430, 651, 772, 1055, 1390
FspBI CTAG 3 cut(s) 1143, 1182, 1723
GlaI GCGC 2 cut(s) 32, 65
GluI GCNGC 9 cut(s) 21, 399, 424, 427, 430, 651, 772, 1055, 1390
GsuI CTGGAG 1 cut(s) 322
HaeII RGCGCY 2 cut(s) 34, 67
HapII CCGG 2 cut(s) 508, 1517
HhaI GCGC 2 cut(s) 33, 66
Hin1I GRCGYC 2 cut(s) 31, 64
Hin1II CATG 6 cut(s) 455, 583, 700, 1137, 1294, 1430
Hin6I GCGC 2 cut(s) 31, 64
HinP1I GCGC 2 cut(s) 31, 64
HindIII AAGCTT 2 cut(s) 387, 1310
HinfI GANTC 5 cut(s) 77, 144, 548, 685, 1419
HpaII CCGG 2 cut(s) 508, 1517
HphI GGTGA 2 cut(s) 590, 1462
Hpy188I TCNGA 9 cut(s) 547, 561, 684, 936, 1246, 1282, 1354, 1377, 1386
Hpy188III TCNNGA 6 cut(s) 160, 201, 242, 295, 791, 1619
HpyAV CCTTC 3 cut(s) 77, 463, 1700
HpyCH4III ACNGT 4 cut(s) 167, 1043, 1264, 1350
HpyCH4IV ACGT 1 cut(s) 98
HpyF3I CTNAG 6 cut(s) 106, 951, 1308, 1329, 1383, 1576
HpySE526I ACGT 1 cut(s) 98
Hsp92I GRCGYC 2 cut(s) 31, 64
Hsp92II CATG 6 cut(s) 455, 583, 700, 1137, 1294, 1430
HspAI GCGC 2 cut(s) 31, 64
KasI GGCGCC 2 cut(s) 30, 63
Kzo9I GATC 5 cut(s) 87, 313, 739, 1372, 1377
LmnI GCTCC 1 cut(s) 510
Lsp1109I GCAGC 8 cut(s) 385, 435, 438, 441, 662, 783, 1066, 1376
LweI GCATC 6 cut(s) 141, 336, 1000, 1250, 1273, 1612
MaeI CTAG 3 cut(s) 1143, 1182, 1723
MaeII ACGT 1 cut(s) 98
MalI GATC 5 cut(s) 89, 315, 741, 1374, 1379
MbiI CCGCTC 1 cut(s) 93
MboI GATC 5 cut(s) 87, 313, 739, 1372, 1377
MboII GAAGA 6 cut(s) 511, 959, 1202, 1532, 1535, 1562
MfeI CAATTG 2 cut(s) 1221, 1334
MflI RGATCY 2 cut(s) 87, 1377
MhlI GDGCHC 2 cut(s) 646, 1539
Mly113I GGCGCC 2 cut(s) 31, 64
MlyI GAGTC 4 cut(s) 86, 138, 557, 679
MmeI TCCRAC 2 cut(s) 685, 1249
Mph1103I ATGCAT 2 cut(s) 1135, 1288
MroXI GAANNNNTTC 1 cut(s) 907
MseI TTAA 4 cut(s) 404, 1062, 1415, 1584
MspA1I CMGCKG 1 cut(s) 1483
MspI CCGG 2 cut(s) 508, 1517
MspR9I CCNGG 3 cut(s) 345, 357, 1296
MunI CAATTG 2 cut(s) 1221, 1334
MvaI CCWGG 3 cut(s) 345, 357, 1296
NarI GGCGCC 2 cut(s) 31, 64
NdeI CATATG 1 cut(s) 1444
NdeII GATC 5 cut(s) 87, 313, 739, 1372, 1377
NlaIII CATG 6 cut(s) 455, 583, 700, 1137, 1294, 1430
NlaIV GGNNCC 5 cut(s) 32, 65, 280, 506, 519
NmeAIII GCCGAG 6 cut(s) 7, 27, 51, 61, 96, 116
NsiI ATGCAT 2 cut(s) 1135, 1288
NspI RCATGY 2 cut(s) 1137, 1294
NspV TTCGAA 1 cut(s) 467
PdmI GAANNNNTTC 1 cut(s) 907
PfeI GAWTC 1 cut(s) 1419
PkrI GCNGC 9 cut(s) 22, 400, 425, 428, 431, 652, 773, 1056, 1391
PleI GAGTC 4 cut(s) 85, 138, 556, 679
PluTI GGCGCC 2 cut(s) 34, 67
PpsI GAGTC 4 cut(s) 85, 138, 556, 679
PpuMI RGGWCCY 1 cut(s) 518
Psp124BI GAGCTC 1 cut(s) 1539
Psp5II RGGWCCY 1 cut(s) 518
Psp6I CCWGG 3 cut(s) 343, 355, 1294
PspGI CCWGG 3 cut(s) 343, 355, 1294
PspN4I GGNNCC 5 cut(s) 32, 65, 280, 506, 519
PspPI GGNCC 1 cut(s) 518
PspPPI RGGWCCY 1 cut(s) 518
PsuI RGATCY 2 cut(s) 87, 1377
PvuII CAGCTG 1 cut(s) 1483
SacI GAGCTC 1 cut(s) 1539
SaqAI TTAA 4 cut(s) 404, 1062, 1415, 1584
SatI GCNGC 9 cut(s) 21, 399, 424, 427, 430, 651, 772, 1055, 1390
Sau3AI GATC 5 cut(s) 87, 313, 739, 1372, 1377
Sau96I GGNCC 1 cut(s) 518
SchI GAGTC 4 cut(s) 86, 138, 557, 679
ScrFI CCNGG 3 cut(s) 345, 357, 1296
SduI GDGCHC 2 cut(s) 646, 1539
SfaNI GCATC 6 cut(s) 141, 336, 1000, 1250, 1273, 1612
SfoI GGCGCC 2 cut(s) 32, 65
SfuI TTCGAA 1 cut(s) 467
SinI GGWCC 1 cut(s) 518
SmlI CTYRAG 1 cut(s) 791
SmoI CTYRAG 1 cut(s) 791
SpeI ACTAGT 1 cut(s) 1142
SsiI CCGC 5 cut(s) 20, 91, 120, 130, 786
SspDI GGCGCC 2 cut(s) 30, 63
SspI AATATT 1 cut(s) 1402
SspMI CTAG 3 cut(s) 1143, 1182, 1723
SstI GAGCTC 1 cut(s) 1539
StyD4I CCNGG 3 cut(s) 343, 355, 1294
StyI CCWWGG 2 cut(s) 524, 552
TaaI ACNGT 4 cut(s) 167, 1043, 1264, 1350
TaiI ACGT 1 cut(s) 101
TaqI TCGA 1 cut(s) 467
TauI GCSGC 1 cut(s) 23
TfiI GAWTC 1 cut(s) 1419
Tru1I TTAA 4 cut(s) 404, 1062, 1415, 1584
Tru9I TTAA 4 cut(s) 404, 1062, 1415, 1584
TscAI CASTG 6 cut(s) 18, 172, 731, 845, 1048, 1267
TseI GCWGC 8 cut(s) 398, 423, 426, 429, 650, 771, 1054, 1389
TspDTI ATGAA 7 cut(s) 468, 582, 596, 685, 919, 1012, 1293
TspGWI ACGGA 2 cut(s) 386, 1202
TspRI CASTG 6 cut(s) 18, 172, 731, 845, 1048, 1267
VpaK11BI GGWCC 1 cut(s) 518
XapI RAATTY 4 cut(s) 196, 301, 1018, 1672
XceI RCATGY 2 cut(s) 1137, 1294
XmnI GAANNNNTTC 1 cut(s) 907
XspI CTAG 3 cut(s) 1143, 1182, 1723
Zsp2I ATGCAT 2 cut(s) 1135, 1288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.