RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G23370 AT3G23370 AT3G23370 AT3G23370 |
| fragaria_vesca | FvH4_4g02261 FvH4_4g03920 |
| malus_domestica | MD16G1220900.v1.1 |
| prunus_persica | Prupe.1G041400_v2.0.a1 Prupe.1G041400_v2.0.a1 |
| pyrus_communis | pycom16g18530 |
| rosa_chinensis | RchiOBHm_Chr1g0364771 RchiOBHm_Chr4g0393941 RchiOBHm_Chr6g0277021 |
| rosa_laevigata | RLG00000009724 RLG00000024329 |
| rosa_multiflora | Rmu_co8066178.1_g000001 Rmu_sc0003401.1_g000010 Rmu_sc0007642.1_g000001 Rmu_sc0007642.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00325220 Rroxscaffold_5G00339020 Rroxscaffold_6G00405510 Rroxscaffold_7G00190440 |
| rosa_rugosa | Rorug03G0370000.1 Rorug03G0370100.1 Rorug06G0419300 |
| rosa_samantha | Rh4AG049700 Rh4BG046200 Rh4CG053300 Rh4DG046900 |
| rosa_wichuraiana | Rw4G003940 Rw6G019670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1121, 2386 |
| AccB1I | GGYRCC | 3 cut(s) | 107, 550, 2203 |
| AciI | CCGC | 5 cut(s) | 35, 38, 718, 1995, 2396 |
| AclWI | GGATC | 4 cut(s) | 985, 1567, 1777, 1880 |
| AcoI | YGGCCR | 2 cut(s) | 400, 2306 |
| AcsI | RAATTY | 4 cut(s) | 736, 1860, 2051, 2436 |
| AcuI | CTGAAG | 3 cut(s) | 678, 1911, 2113 |
| AfaI | GTAC | 2 cut(s) | 1582, 2249 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1094, 1130 |
| AflIII | ACRYGT | 1 cut(s) | 1642 |
| AhlI | ACTAGT | 1 cut(s) | 1550 |
| AjiI | CACGTC | 1 cut(s) | 1141 |
| AjnI | CCWGG | 4 cut(s) | 577, 1018, 1093, 1576 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1262, 1294, 1781, 1813 |
| AleI | CACNNNNGTG | 1 cut(s) | 1641 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 804, 836 |
| Alw21I | GWGCWC | 1 cut(s) | 1816 |
| Alw26I | GTCTC | 4 cut(s) | 20, 435, 1436, 2051 |
| AlwI | GGATC | 4 cut(s) | 985, 1567, 1777, 1880 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 356, 650, 878, 1136 |
| AoxI | GGCC | 4 cut(s) | 400, 1168, 2271, 2306 |
| ApeKI | GCWGC | 4 cut(s) | 772, 881, 1372, 2087 |
| ApoI | RAATTY | 4 cut(s) | 736, 1860, 2051, 2436 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2436 |
| AspS9I | GGNCC | 3 cut(s) | 195, 575, 1169 |
| AsuC2I | CCSGG | 1 cut(s) | 2208 |
| AsuHPI | GGTGA | 4 cut(s) | 593, 1034, 1895, 2534 |
| AsuII | TTCGAA | 2 cut(s) | 1268, 1471 |
| AvaII | GGWCC | 2 cut(s) | 195, 575 |
| BaeGI | GKGCMC | 2 cut(s) | 112, 2208 |
| BalI | TGGCCA | 2 cut(s) | 402, 2308 |
| BanI | GGYRCC | 3 cut(s) | 107, 550, 2203 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1138, 1170 |
| BbsI | GAAGAC | 3 cut(s) | 990, 1214, 1566 |
| Bbv12I | GWGCWC | 1 cut(s) | 1816 |
| BbvCI | CCTCAGC | 1 cut(s) | 607 |
| BbvI | GCAGC | 4 cut(s) | 759, 893, 1359, 2099 |
| BccI | CCATC | 3 cut(s) | 75, 1733, 2348 |
| BciT130I | CCWGG | 4 cut(s) | 579, 1020, 1095, 1578 |
| BciVI | GTATCC | 1 cut(s) | 1029 |
| BclI | TGATCA | 2 cut(s) | 1114, 1935 |
| BcnI | CCSGG | 1 cut(s) | 2208 |
| BcoDI | GTCTC | 4 cut(s) | 20, 435, 1436, 2051 |
| BcuI | ACTAGT | 1 cut(s) | 1550 |
| BfaI | CTAG | 5 cut(s) | 1032, 1164, 1551, 1761, 2193 |
| BfmI | CTRYAG | 6 cut(s) | 144, 528, 879, 1068, 1128, 1605 |
| BfuAI | ACCTGC | 2 cut(s) | 1121, 2386 |
| BfuI | GTATCC | 1 cut(s) | 1029 |
| BglII | AGATCT | 2 cut(s) | 482, 905 |
| BisI | GCNGC | 6 cut(s) | 35, 38, 773, 882, 1373, 2088 |
| BlsI | GCNGC | 6 cut(s) | 36, 39, 774, 883, 1374, 2089 |
| Bme1390I | CCNGG | 5 cut(s) | 579, 1020, 1095, 1578, 2208 |
| Bme18I | GGWCC | 2 cut(s) | 195, 575 |
| BmgBI | CACGTC | 1 cut(s) | 1141 |
| BmgT120I | GGNCC | 3 cut(s) | 195, 575, 1169 |
| BmiI | GGNNCC | 6 cut(s) | 109, 196, 552, 834, 1171, 2205 |
| BmrFI | CCNGG | 5 cut(s) | 579, 1020, 1095, 1578, 2208 |
| BmsI | GCATC | 7 cut(s) | 514, 764, 1070, 1371, 1489, 1819, 2056 |
| BpiI | GAAGAC | 3 cut(s) | 990, 1214, 1566 |
| Bpu10I | CCTNAGC | 1 cut(s) | 607 |
| Bpu14I | TTCGAA | 2 cut(s) | 1268, 1471 |
| BpuEI | CTTGAG | 1 cut(s) | 980 |
| BpuMI | CCSGG | 1 cut(s) | 2208 |
| BsaAI | YACGTR | 1 cut(s) | 1747 |
| BsaI | GGTCTC | 1 cut(s) | 1436 |
| BsaJI | CCNNGG | 5 cut(s) | 828, 912, 1536, 1576, 2518 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1094, 1130 |
| Bse1I | ACTGG | 5 cut(s) | 577, 1242, 1432, 2205, 2475 |
| BseBI | CCWGG | 4 cut(s) | 579, 1020, 1095, 1578 |
| BseDI | CCNNGG | 5 cut(s) | 828, 912, 1536, 1576, 2518 |
| BseGI | GGATG | 2 cut(s) | 1834, 2287 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1094, 1130 |
| BseNI | ACTGG | 5 cut(s) | 577, 1242, 1432, 2205, 2475 |
| BseRI | GAGGAG | 3 cut(s) | 146, 595, 1424 |
| BseSI | GKGCMC | 2 cut(s) | 112, 2208 |
| BseXI | GCAGC | 4 cut(s) | 759, 893, 1359, 2099 |
| BseYI | CCCAGC | 2 cut(s) | 1173, 1418 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2362 |
| BshFI | GGCC | 4 cut(s) | 402, 1170, 2273, 2308 |
| BshNI | GGYRCC | 3 cut(s) | 107, 550, 2203 |
| BsiEI | CGRYCG | 1 cut(s) | 2362 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1816 |
| BsiSI | CCGG | 1 cut(s) | 2208 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1094, 1130 |
| BsmAI | GTCTC | 4 cut(s) | 20, 435, 1436, 2051 |
| BsmBI | CGTCTC | 1 cut(s) | 20 |
| BsmI | GAATGC | 1 cut(s) | 187 |
| BsnI | GGCC | 4 cut(s) | 402, 1170, 2273, 2308 |
| Bso31I | GGTCTC | 1 cut(s) | 1436 |
| Bsp119I | TTCGAA | 2 cut(s) | 1268, 1471 |
| Bsp1286I | GDGCHC | 3 cut(s) | 112, 1816, 2208 |
| Bsp1407I | TGTACA | 1 cut(s) | 2247 |
| Bsp19I | CCATGG | 1 cut(s) | 1536 |
| BspACI | CCGC | 5 cut(s) | 35, 38, 718, 1995, 2396 |
| BspANI | GGCC | 4 cut(s) | 402, 1170, 2273, 2308 |
| BspHI | TCATGA | 1 cut(s) | 1692 |
| BspLI | GGNNCC | 6 cut(s) | 109, 196, 552, 834, 1171, 2205 |
| BspMAI | CTGCAG | 2 cut(s) | 883, 1132 |
| BspMI | ACCTGC | 2 cut(s) | 1121, 2386 |
| BspPI | GGATC | 4 cut(s) | 985, 1567, 1777, 1880 |
| BspQI | GCTCTTC | 1 cut(s) | 1244 |
| BspT104I | TTCGAA | 2 cut(s) | 1268, 1471 |
| BspT107I | GGYRCC | 3 cut(s) | 107, 550, 2203 |
| BspTNI | GGTCTC | 1 cut(s) | 1436 |
| BsrGI | TGTACA | 1 cut(s) | 2247 |
| BsrI | ACTGG | 5 cut(s) | 577, 1242, 1432, 2205, 2475 |
| BssECI | CCNNGG | 5 cut(s) | 828, 912, 1536, 1576, 2518 |
| BssT1I | CCWWGG | 3 cut(s) | 828, 912, 1536 |
| Bst2UI | CCWGG | 4 cut(s) | 579, 1020, 1095, 1578 |
| Bst4CI | ACNGT | 9 cut(s) | 154, 319, 352, 652, 1069, 1930, 1944, 2155, 2522 |
| Bst6I | CTCTTC | 2 cut(s) | 511, 1244 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 715 |
| BstAUI | TGTACA | 1 cut(s) | 2247 |
| BstBAI | YACGTR | 1 cut(s) | 1747 |
| BstBI | TTCGAA | 2 cut(s) | 1268, 1471 |
| BstC8I | GCNNGC | 3 cut(s) | 404, 458, 2298 |
| BstDSI | CCRYGG | 2 cut(s) | 1536, 2518 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1128 |
| BstF5I | GGATG | 2 cut(s) | 1834, 2287 |
| BstMAI | GTCTC | 4 cut(s) | 20, 435, 1436, 2051 |
| BstMCI | CGRYCG | 1 cut(s) | 2362 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 715, 1419, 2001, 2010, 2087, 2378 |
| BstNI | CCWGG | 4 cut(s) | 579, 1020, 1095, 1578 |
| BstSCI | CCNGG | 5 cut(s) | 577, 1018, 1093, 1576, 2206 |
| BstSFI | CTRYAG | 6 cut(s) | 144, 528, 879, 1068, 1128, 1605 |
| BstSLI | GKGCMC | 2 cut(s) | 112, 2208 |
| BstV1I | GCAGC | 4 cut(s) | 759, 893, 1359, 2099 |
| BstV2I | GAAGAC | 3 cut(s) | 990, 1214, 1566 |
| BstX2I | RGATCY | 4 cut(s) | 482, 905, 977, 1572 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 59 |
| BstYI | RGATCY | 4 cut(s) | 482, 905, 977, 1572 |
| BsuI | GTATCC | 1 cut(s) | 1029 |
| BsuRI | GGCC | 4 cut(s) | 402, 1170, 2273, 2308 |
| BtgI | CCRYGG | 2 cut(s) | 1536, 2518 |
| BtrI | CACGTC | 1 cut(s) | 1141 |
| BtsCI | GGATG | 2 cut(s) | 1834, 2287 |
| BtsI | GCAGTG | 2 cut(s) | 109, 651 |
| BtsIMutI | CAGTG | 7 cut(s) | 109, 159, 315, 570, 651, 2160, 2482 |
| BveI | ACCTGC | 2 cut(s) | 1121, 2386 |
| Cac8I | GCNNGC | 3 cut(s) | 404, 458, 2298 |
| CaiI | CAGNNNCTG | 4 cut(s) | 356, 650, 878, 1136 |
| CciI | TCATGA | 1 cut(s) | 1692 |
| Cfr13I | GGNCC | 3 cut(s) | 195, 575, 1169 |
| CsiI | ACCWGGT | 2 cut(s) | 577, 1018 |
| Csp6I | GTAC | 2 cut(s) | 1581, 2248 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 108, 143 |
| CviAII | CATG | 9 cut(s) | 776, 800, 1532, 1537, 1693, 1817, 1903, 1952, 2441 |
| CviQI | GTAC | 2 cut(s) | 1581, 2248 |
| DraI | TTTAAA | 1 cut(s) | 1290 |
| EaeI | YGGCCR | 2 cut(s) | 400, 2306 |
| Eam1104I | CTCTTC | 2 cut(s) | 511, 1244 |
| EarI | CTCTTC | 2 cut(s) | 511, 1244 |
| EciI | GGCGGA | 1 cut(s) | 2385 |
| Eco130I | CCWWGG | 3 cut(s) | 828, 912, 1536 |
| Eco31I | GGTCTC | 1 cut(s) | 1436 |
| Eco47I | GGWCC | 2 cut(s) | 195, 575 |
| Eco57I | CTGAAG | 3 cut(s) | 678, 1911, 2113 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1128 |
| EcoO109I | RGGNCCY | 1 cut(s) | 195 |
| EcoRI | GAATTC | 2 cut(s) | 736, 2436 |
| EcoRII | CCWGG | 4 cut(s) | 577, 1018, 1093, 1576 |
| EcoT14I | CCWWGG | 3 cut(s) | 828, 912, 1536 |
| EcoT22I | ATGCAT | 1 cut(s) | 1063 |
| ErhI | CCWWGG | 3 cut(s) | 828, 912, 1536 |
| Esp3I | CGTCTC | 1 cut(s) | 20 |
| FaeI | CATG | 9 cut(s) | 779, 803, 1535, 1540, 1696, 1820, 1906, 1955, 2444 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1547, 1579, 1968, 2000 |
| FatI | CATG | 9 cut(s) | 775, 799, 1531, 1536, 1692, 1816, 1902, 1951, 2440 |
| FbaI | TGATCA | 2 cut(s) | 1114, 1935 |
| Fnu4HI | GCNGC | 6 cut(s) | 35, 38, 773, 882, 1373, 2088 |
| FokI | GGATG | 2 cut(s) | 1841, 2294 |
| Fsp4HI | GCNGC | 6 cut(s) | 35, 38, 773, 882, 1373, 2088 |
| FspBI | CTAG | 5 cut(s) | 1032, 1164, 1551, 1761, 2193 |
| GluI | GCNGC | 6 cut(s) | 35, 38, 773, 882, 1373, 2088 |
| GsaI | CCCAGC | 2 cut(s) | 1177, 1422 |
| HaeIII | GGCC | 4 cut(s) | 402, 1170, 2273, 2308 |
| HapII | CCGG | 1 cut(s) | 2208 |
| Hin1II | CATG | 9 cut(s) | 779, 803, 1535, 1540, 1696, 1820, 1906, 1955, 2444 |
| HincII | GTYRAC | 1 cut(s) | 1947 |
| HindII | GTYRAC | 1 cut(s) | 1947 |
| HindIII | AAGCTT | 1 cut(s) | 2294 |
| HpaII | CCGG | 1 cut(s) | 2208 |
| HphI | GGTGA | 4 cut(s) | 593, 1034, 1895, 2534 |
| Hpy166II | GTNNAC | 4 cut(s) | 383, 1025, 1947, 2480 |
| Hpy188III | TCNNGA | 8 cut(s) | 322, 930, 937, 1693, 1786, 1889, 2108, 2193 |
| Hpy8I | GTNNAC | 4 cut(s) | 383, 1025, 1947, 2480 |
| HpyAV | CCTTC | 8 cut(s) | 29, 301, 847, 1038, 1164, 1715, 1760, 2414 |
| HpyCH4III | ACNGT | 9 cut(s) | 154, 319, 352, 652, 1069, 1930, 1944, 2155, 2522 |
| HpyCH4IV | ACGT | 3 cut(s) | 1140, 1642, 1746 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 715, 1419, 2001, 2010, 2087, 2378 |
| HpySE526I | ACGT | 3 cut(s) | 1140, 1642, 1746 |
| Hsp92II | CATG | 9 cut(s) | 779, 803, 1535, 1540, 1696, 1820, 1906, 1955, 2444 |
| Ksp22I | TGATCA | 2 cut(s) | 1114, 1935 |
| LguI | GCTCTTC | 1 cut(s) | 1244 |
| LmnI | GCTCC | 3 cut(s) | 133, 2242, 2386 |
| Lsp1109I | GCAGC | 4 cut(s) | 759, 893, 1359, 2099 |
| LweI | GCATC | 7 cut(s) | 514, 764, 1070, 1371, 1489, 1819, 2056 |
| MabI | ACCWGGT | 2 cut(s) | 577, 1018 |
| MaeI | CTAG | 5 cut(s) | 1032, 1164, 1551, 1761, 2193 |
| MaeII | ACGT | 3 cut(s) | 1140, 1642, 1746 |
| MaeIII | GTNAC | 5 cut(s) | 646, 868, 945, 1014, 1742 |
| MfeI | CAATTG | 1 cut(s) | 2082 |
| MflI | RGATCY | 4 cut(s) | 482, 905, 977, 1572 |
| MhlI | GDGCHC | 3 cut(s) | 112, 1816, 2208 |
| MlsI | TGGCCA | 2 cut(s) | 402, 2308 |
| MluNI | TGGCCA | 2 cut(s) | 402, 2308 |
| MlyI | GAGTC | 5 cut(s) | 383, 437, 501, 942, 953 |
| MmeI | TCCRAC | 4 cut(s) | 144, 233, 1054, 1943 |
| Mox20I | TGGCCA | 2 cut(s) | 402, 2308 |
| Mph1103I | ATGCAT | 1 cut(s) | 1063 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2436 |
| MscI | TGGCCA | 2 cut(s) | 402, 2308 |
| MslI | CAYNNNNRTG | 3 cut(s) | 789, 1482, 1641 |
| Msp20I | TGGCCA | 2 cut(s) | 402, 2308 |
| MspA1I | CMGCKG | 1 cut(s) | 743 |
| MspI | CCGG | 1 cut(s) | 2208 |
| MspR9I | CCNGG | 5 cut(s) | 579, 1020, 1095, 1578, 2208 |
| MunI | CAATTG | 1 cut(s) | 2082 |
| Mva1269I | GAATGC | 1 cut(s) | 187 |
| MvaI | CCWGG | 4 cut(s) | 579, 1020, 1095, 1578 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 715, 1419, 2001, 2010, 2087, 2378 |
| NciI | CCSGG | 1 cut(s) | 2208 |
| NcoI | CCATGG | 1 cut(s) | 1536 |
| NlaIII | CATG | 9 cut(s) | 779, 803, 1535, 1540, 1696, 1820, 1906, 1955, 2444 |
| NlaIV | GGNNCC | 6 cut(s) | 109, 196, 552, 834, 1171, 2205 |
| NmuCI | GTSAC | 2 cut(s) | 646, 945 |
| NsiI | ATGCAT | 1 cut(s) | 1063 |
| NspV | TTCGAA | 2 cut(s) | 1268, 1471 |
| OliI | CACNNNNGTG | 1 cut(s) | 1641 |
| PagI | TCATGA | 1 cut(s) | 1692 |
| PciSI | GCTCTTC | 1 cut(s) | 1244 |
| PctI | GAATGC | 1 cut(s) | 187 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2436 |
| PfeI | GAWTC | 6 cut(s) | 236, 332, 845, 1382, 1601, 1915 |
| PflFI | GACNNNGTC | 2 cut(s) | 491, 943 |
| PkrI | GCNGC | 6 cut(s) | 36, 39, 774, 883, 1374, 2089 |
| PleI | GAGTC | 5 cut(s) | 383, 437, 500, 941, 952 |
| PpsI | GAGTC | 5 cut(s) | 383, 437, 500, 941, 952 |
| Ppu21I | YACGTR | 1 cut(s) | 1747 |
| PpuMI | RGGWCCY | 1 cut(s) | 195 |
| Psp5II | RGGWCCY | 1 cut(s) | 195 |
| Psp6I | CCWGG | 4 cut(s) | 577, 1018, 1093, 1576 |
| PspFI | CCCAGC | 2 cut(s) | 1173, 1418 |
| PspGI | CCWGG | 4 cut(s) | 577, 1018, 1093, 1576 |
| PspN4I | GGNNCC | 6 cut(s) | 109, 196, 552, 834, 1171, 2205 |
| PspPI | GGNCC | 3 cut(s) | 195, 575, 1169 |
| PspPPI | RGGWCCY | 1 cut(s) | 195 |
| PstI | CTGCAG | 2 cut(s) | 883, 1132 |
| PstNI | CAGNNNCTG | 4 cut(s) | 356, 650, 878, 1136 |
| PsuI | RGATCY | 4 cut(s) | 482, 905, 977, 1572 |
| PsyI | GACNNNGTC | 2 cut(s) | 491, 943 |
| PvuII | CAGCTG | 1 cut(s) | 743 |
| RsaI | GTAC | 2 cut(s) | 1582, 2249 |
| RsaNI | GTAC | 2 cut(s) | 1581, 2248 |
| RseI | CAYNNNNRTG | 3 cut(s) | 789, 1482, 1641 |
| SapI | GCTCTTC | 1 cut(s) | 1244 |
| SatI | GCNGC | 6 cut(s) | 35, 38, 773, 882, 1373, 2088 |
| Sau96I | GGNCC | 3 cut(s) | 195, 575, 1169 |
| SchI | GAGTC | 5 cut(s) | 383, 437, 501, 942, 953 |
| ScrFI | CCNGG | 5 cut(s) | 579, 1020, 1095, 1578, 2208 |
| SduI | GDGCHC | 3 cut(s) | 112, 1816, 2208 |
| SexAI | ACCWGGT | 2 cut(s) | 577, 1018 |
| SfaNI | GCATC | 7 cut(s) | 514, 764, 1070, 1371, 1489, 1819, 2056 |
| SfcI | CTRYAG | 6 cut(s) | 144, 528, 879, 1068, 1128, 1605 |
| SfuI | TTCGAA | 2 cut(s) | 1268, 1471 |
| SinI | GGWCC | 2 cut(s) | 195, 575 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 789, 1482, 1641 |
| SmlI | CTYRAG | 1 cut(s) | 959 |
| SmoI | CTYRAG | 1 cut(s) | 959 |
| SpeI | ACTAGT | 1 cut(s) | 1550 |
| SsiI | CCGC | 5 cut(s) | 35, 38, 718, 1995, 2396 |
| SspI | AATATT | 5 cut(s) | 466, 2173, 2314, 2503, 2531 |
| SspMI | CTAG | 5 cut(s) | 1032, 1164, 1551, 1761, 2193 |
| StyD4I | CCNGG | 5 cut(s) | 577, 1018, 1093, 1576, 2206 |
| StyI | CCWWGG | 3 cut(s) | 828, 912, 1536 |
| TaaI | ACNGT | 9 cut(s) | 154, 319, 352, 652, 1069, 1930, 1944, 2155, 2522 |
| TaiI | ACGT | 3 cut(s) | 1143, 1645, 1749 |
| TaqI | TCGA | 4 cut(s) | 321, 987, 1268, 1471 |
| TaqII | GACCGA | 1 cut(s) | 2376 |
| TatI | WGTACW | 1 cut(s) | 2247 |
| TauI | GCSGC | 2 cut(s) | 37, 40 |
| TfiI | GAWTC | 6 cut(s) | 236, 332, 845, 1382, 1601, 1915 |
| TscAI | CASTG | 7 cut(s) | 109, 159, 322, 577, 651, 2160, 2482 |
| TseFI | GTSAC | 2 cut(s) | 646, 945 |
| TseI | GCWGC | 4 cut(s) | 772, 881, 1372, 2087 |
| Tsp45I | GTSAC | 2 cut(s) | 646, 945 |
| TspRI | CASTG | 7 cut(s) | 109, 159, 322, 577, 651, 2160, 2482 |
| Tth111I | GACNNNGTC | 2 cut(s) | 491, 943 |
| VpaK11BI | GGWCC | 2 cut(s) | 195, 575 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1128 |
| XapI | RAATTY | 4 cut(s) | 736, 1860, 2051, 2436 |
| XbaI | TCTAGA | 1 cut(s) | 2192 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2017 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2436 |
| XspI | CTAG | 5 cut(s) | 1032, 1164, 1551, 1761, 2193 |
| Zsp2I | ATGCAT | 1 cut(s) | 1063 |