Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004450

Physical Location & Seq

Genomic Coordinates Reverse (-)

39368235 .. 39369343

Gene Structure 1109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G019670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGAAGAAATCAGGTCTTTATTGCTCTCTGCTGAATTTGAGATTGAGTTACAGAACAAGGCATTGTCTTTATCCTCTTTGACTGCTACGGTTGCCCAAAATAGTATGAAATTACCACAAGGCTATACTTGCTCACCTACCGTGTCTAATGTTGGACATCACAGTGCATACTATATTGCCTCCTTCAGCAATGGTTGTGTTCTACAAAATGGCAATGGAAGTTTTTCTCAACCCAATAATGGCTTCATTCAGCAAAATTGTGGCTCTCAGCAAAACAATGGTCTTCAACTAGCTGGTATTTCACTACATCAACCTAACGGATTCTCACAGCCGAATTTCACTACTTCTCAGGCAAACAGTGAAACTGTGCAGCAATTTAATTTTCAGCCAAATGATTGCTTTATGCCAAATGGAGTTGTATATAATGCTGTTGGGATTGGATATCATAATGCATGTGCTACTGGTGCTGTGGTGAGTGATAGAAAATATATGTCTGCTTCTAGCACGAAAGAAATGGAAAACAAGAAAGAGTTGCTTTCAATTATAGAAGACACTATTATTCGAGACACACTGGATGCATACACGTCTGGGCTTTCATCTCAGCTAGTGCTTGATAAAACTGAGCAATTGCAAAAGGAACTGTCAGATCTCCAGTCCGAATATGATAGGAACTCTCAGAGCTGCAAGCAGAATATTTCAACAGATTTAAGATCTGACACAGTCAGGGAGAACTCTTTATCTGATGTGGTTGATGCTACTGCTTCTAATGAAGTCGAGGTGCCTAAATCTTTGGATAGCACTGAACCTGGTGAGGCTAAAAATACAATTCACTCTTCAGCAGATGTAGTTTTTTCTCCAAAGAATTTGGTTGATACGGCTGTTTCCGAAGTTATGAAGAGTTTTAGTGAAAATAAATCAACAAGTGATATGTTGCATATAATGCAGAAAAATTCTATGGGAATTCAGCTGGTCTGGATTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

327

Amino Acids

35.69

Weight (kDa)

4.81

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23370 AT3G23370 AT3G23370 AT3G23370
fragaria_vesca	FvH4_4g02261 FvH4_4g03920
malus_domestica	MD16G1220900.v1.1
prunus_persica	Prupe.1G041400_v2.0.a1 Prupe.1G041400_v2.0.a1
pyrus_communis	pycom16g18530
rosa_chinensis	RchiOBHm_Chr1g0364771 RchiOBHm_Chr4g0393941 RchiOBHm_Chr6g0277021
rosa_laevigata	RLG00000009724 RLG00000024329
rosa_multiflora	Rmu_co8066178.1_g000001 Rmu_sc0003401.1_g000010 Rmu_sc0007642.1_g000001 Rmu_sc0007642.1_g000002
rosa_roxburghii	Rroxscaffold_4G00325220 Rroxscaffold_5G00339020 Rroxscaffold_6G00405510 Rroxscaffold_7G00190440
rosa_rugosa	Rorug03G0370000.1 Rorug03G0370100.1 Rorug06G0419300
rosa_samantha	Rh4AG049700 Rh4BG046200 Rh4CG053300 Rh4DG046900
rosa_wichuraiana	Rw4G003940 Rw6G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	778
AcsI	RAATTY	5 cut(s)	35, 334, 862, 949, 960
AcuI	CTGAAG	2 cut(s)	169, 819
AfiI	CCNNNNNNNGG	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	582
AgsI	TTSAA	3 cut(s)	287, 540, 699
AjiI	CACGTC	1 cut(s)	585
AjnI	CCWGG	1 cut(s)	805
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	4 cut(s)	293, 604, 681, 967
AluI	AGCT	4 cut(s)	293, 604, 681, 967
Alw26I	GTCTC	1 cut(s)	558
ApeKI	GCWGC	2 cut(s)	370, 681
ApoI	RAATTY	5 cut(s)	35, 334, 862, 949, 960
ArsI	GACNNNNNNTTYG	2 cut(s)	265, 297
Asp700I	GAANNNNTTC	1 cut(s)	223
AsuHPI	GGTGA	3 cut(s)	126, 484, 821
BaeI	ACNNNNGTAYC	2 cut(s)	864, 897
BanI	GGYRCC	1 cut(s)	778
BbsI	GAAGAC	2 cut(s)	275, 555
BbvI	GCAGC	2 cut(s)	382, 668
BceAI	ACGGC	1 cut(s)	891
BciT130I	CCWGG	1 cut(s)	807
BcoDI	GTCTC	1 cut(s)	558
BfaI	CTAG	3 cut(s)	290, 501, 605
BglII	AGATCT	2 cut(s)	646, 710
BisI	GCNGC	2 cut(s)	371, 682
BlsI	GCNGC	2 cut(s)	372, 683
Bme1390I	CCNGG	1 cut(s)	807
BmgBI	CACGTC	1 cut(s)	585
BmiI	GGNNCC	1 cut(s)	780
BmrFI	CCNGG	1 cut(s)	807
BmsI	GCATC	2 cut(s)	565, 742
BpiI	GAAGAC	2 cut(s)	275, 555
BpmI	CTGGAG	1 cut(s)	635
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	3 cut(s)	466, 576, 652
Bse3DI	GCAATG	2 cut(s)	196, 220
BseBI	CCWGG	1 cut(s)	807
BseGI	GGATG	1 cut(s)	580
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMI	GCAATG	2 cut(s)	196, 220
BseMII	CTCAG	5 cut(s)	281, 362, 612, 614, 689
BseNI	ACTGG	3 cut(s)	466, 576, 652
BseXI	GCAGC	2 cut(s)	382, 668
BsgI	GTGCAG	1 cut(s)	389
BshNI	GGYRCC	1 cut(s)	778
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	558
Bsp143I	GATC	2 cut(s)	646, 710
BspCNI	CTCAG	5 cut(s)	280, 361, 613, 613, 688
BspLI	GGNNCC	1 cut(s)	780
BspT107I	GGYRCC	1 cut(s)	778
BsrDI	GCAATG	2 cut(s)	196, 220
BsrI	ACTGG	3 cut(s)	466, 576, 652
BssMI	GATC	2 cut(s)	646, 710
Bst2UI	CCWGG	1 cut(s)	807
Bst4CI	ACNGT	7 cut(s)	91, 142, 164, 359, 367, 642, 721
Bst6I	CTCTTC	2 cut(s)	838, 890
BstAPI	GCANNNNNTGC	1 cut(s)	940
BstC8I	GCNNGC	1 cut(s)	686
BstDEI	CTNAG	5 cut(s)	267, 348, 600, 621, 675
BstF5I	GGATG	1 cut(s)	580
BstKTI	GATC	2 cut(s)	649, 713
BstMAI	GTCTC	1 cut(s)	558
BstMBI	GATC	2 cut(s)	646, 710
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 129, 464, 940
BstNI	CCWGG	1 cut(s)	807
BstNSI	RCATGY	1 cut(s)	456
BstSCI	CCNGG	1 cut(s)	805
BstV1I	GCAGC	2 cut(s)	382, 668
BstV2I	GAAGAC	2 cut(s)	275, 555
BstX2I	RGATCY	2 cut(s)	646, 710
BstYI	RGATCY	2 cut(s)	646, 710
BtrI	CACGTC	1 cut(s)	585
BtsCI	GGATG	1 cut(s)	580
BtsIMutI	CAGTG	4 cut(s)	169, 364, 569, 798
Cac8I	GCNNGC	1 cut(s)	686
CsiI	ACCWGGT	1 cut(s)	805
CviAII	CATG	1 cut(s)	453
DdeI	CTNAG	5 cut(s)	267, 348, 600, 621, 675
DpnI	GATC	2 cut(s)	648, 712
DpnII	GATC	2 cut(s)	646, 710
Eam1104I	CTCTTC	2 cut(s)	838, 890
EarI	CTCTTC	2 cut(s)	838, 890
Eco32I	GATATC	1 cut(s)	443
Eco57I	CTGAAG	2 cut(s)	169, 819
EcoRI	GAATTC	1 cut(s)	960
EcoRII	CCWGG	1 cut(s)	805
EcoRV	GATATC	1 cut(s)	443
EcoT22I	ATGCAT	2 cut(s)	454, 580
FaeI	CATG	1 cut(s)	456
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FatI	CATG	1 cut(s)	452
Fnu4HI	GCNGC	2 cut(s)	371, 682
FokI	GGATG	1 cut(s)	587
Fsp4HI	GCNGC	2 cut(s)	371, 682
FspBI	CTAG	3 cut(s)	290, 501, 605
GluI	GCNGC	2 cut(s)	371, 682
GsuI	CTGGAG	1 cut(s)	635
Hin1II	CATG	1 cut(s)	456
HinfI	GANTC	2 cut(s)	321, 976
HphI	GGTGA	3 cut(s)	126, 484, 821
Hpy188I	TCNGA	6 cut(s)	646, 658, 678, 715, 742, 886
Hpy188III	TCNNGA	2 cut(s)	563, 973
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	7 cut(s)	91, 142, 164, 359, 367, 642, 721
HpyCH4IV	ACGT	1 cut(s)	584
HpyCH4V	TGCA	8 cut(s)	167, 370, 452, 578, 631, 684, 934, 943
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 129, 464, 940
HpyF3I	CTNAG	5 cut(s)	267, 348, 600, 621, 675
HpySE526I	ACGT	1 cut(s)	584
Hsp92II	CATG	1 cut(s)	456
Kzo9I	GATC	2 cut(s)	646, 710
Lsp1109I	GCAGC	2 cut(s)	382, 668
LweI	GCATC	2 cut(s)	565, 742
MabI	ACCWGGT	1 cut(s)	805
MaeI	CTAG	3 cut(s)	290, 501, 605
MaeII	ACGT	1 cut(s)	584
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	2 cut(s)	648, 712
MboI	GATC	2 cut(s)	646, 710
MboII	GAAGA	5 cut(s)	17, 275, 560, 825, 907
MfeI	CAATTG	1 cut(s)	626
MflI	RGATCY	2 cut(s)	646, 710
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	4 cut(s)	85, 190, 769, 805
Mph1103I	ATGCAT	2 cut(s)	454, 580
MroXI	GAANNNNTTC	1 cut(s)	223
MseI	TTAA	2 cut(s)	378, 707
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	967
MspR9I	CCNGG	1 cut(s)	807
MunI	CAATTG	1 cut(s)	626
MvaI	CCWGG	1 cut(s)	807
MwoI	GCNNNNNNNGC	4 cut(s)	92, 129, 464, 940
NdeII	GATC	2 cut(s)	646, 710
NlaIII	CATG	1 cut(s)	456
NlaIV	GGNNCC	1 cut(s)	780
NsiI	ATGCAT	2 cut(s)	454, 580
NspI	RCATGY	1 cut(s)	456
PdmI	GAANNNNTTC	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	321, 976
PflFI	GACNNNGTC	1 cut(s)	719
PkrI	GCNGC	2 cut(s)	372, 683
Psp6I	CCWGG	1 cut(s)	805
PspGI	CCWGG	1 cut(s)	805
PspN4I	GGNNCC	1 cut(s)	780
PsuI	RGATCY	2 cut(s)	646, 710
PsyI	GACNNNGTC	1 cut(s)	719
PvuII	CAGCTG	1 cut(s)	967
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	378, 707
SatI	GCNGC	2 cut(s)	371, 682
Sau3AI	GATC	2 cut(s)	646, 710
ScrFI	CCNGG	1 cut(s)	807
SexAI	ACCWGGT	1 cut(s)	805
SfaNI	GCATC	2 cut(s)	565, 742
SmiMI	CAYNNNNRTG	1 cut(s)	162
SspI	AATATT	1 cut(s)	694
SspMI	CTAG	3 cut(s)	290, 501, 605
StyD4I	CCNGG	1 cut(s)	805
TaaI	ACNGT	7 cut(s)	91, 142, 164, 359, 367, 642, 721
TaiI	ACGT	1 cut(s)	587
TaqI	TCGA	2 cut(s)	562, 774
TfiI	GAWTC	2 cut(s)	321, 976
Tru1I	TTAA	2 cut(s)	378, 707
Tru9I	TTAA	2 cut(s)	378, 707
TscAI	CASTG	4 cut(s)	169, 364, 576, 805
TseI	GCWGC	2 cut(s)	370, 681
TspDTI	ATGAA	6 cut(s)	122, 235, 585, 783, 908, 968
TspGWI	ACGGA	1 cut(s)	333
TspRI	CASTG	4 cut(s)	169, 364, 576, 805
Tth111I	GACNNNGTC	1 cut(s)	719
XapI	RAATTY	5 cut(s)	35, 334, 862, 949, 960
XceI	RCATGY	1 cut(s)	456
XmnI	GAANNNNTTC	1 cut(s)	223
XspI	CTAG	3 cut(s)	290, 501, 605
Zsp2I	ATGCAT	2 cut(s)	454, 580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.