Rmu_co8066178.1_g000001

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8066178.1
OG0004450
Physical Location & Seq
Reverse (-)
1 .. 526
526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8066178.1_g000001.1.cds

Sequence Viewer

Length: 519 bp
atggaaaacaagaaagagttgctttcaattgagaacgacagatcggcatcagaaactatagaagacactgttgttggagacacatcggatgcattcatgcctgggctttcatctaagcttgtgcttgataaaactgagcaattgcataagaaactgtcagatgataggaactctcagagttgcaagcagaatatttcaacagatttaaggactgacatagtaagggataactctttatctgatgtgcttgaagctactgcttctaatgaagtcgaggtgcctaaatctttagatagcactgggcttggtgaggctaaaaatacaattcactcctcagcagatatagttttttctccagagaatttggttgctgtgactatttctgaagttatgaagaagagtgttagtgaaaataaatcaacaagtgataagttgcatataatgcagaaaagttctatggggaattcagctggtcaagtttcatctaaaggtaaacgggtgcatggtggttataaagat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

173

Amino Acids

18.73

Weight (kDa)

5.28

Isoelectric Point (pI)

45.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 513
AccB1I GGYRCC 1 cut(s) 277
AcsI RAATTY 2 cut(s) 361, 463
AcuI CTGAAG 1 cut(s) 405
AgsI TTSAA 3 cut(s) 27, 198, 251
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 3 cut(s) 118, 254, 470
AluI AGCT 3 cut(s) 118, 254, 470
Alw26I GTCTC 1 cut(s) 72
ApoI RAATTY 2 cut(s) 361, 463
AsuHPI GGTGA 1 cut(s) 320
BanI GGYRCC 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 69
BbvCI CCTCAGC 1 cut(s) 334
BciT130I CCWGG 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 102
BmrI ACTGGG 1 cut(s) 309
BmsI GCATC 2 cut(s) 56, 79
BmuI ACTGGG 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 339
Bpu10I CCTNAGC 1 cut(s) 334
BsaBI GATNNNNATC 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 304
Bse8I GATNNNNATC 1 cut(s) 46
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 101
BseGI GGATG 1 cut(s) 94
BseJI GATNNNNATC 1 cut(s) 46
BseMII CTCAG 3 cut(s) 126, 188, 348
BseNI ACTGG 1 cut(s) 304
BseRI GAGGAG 1 cut(s) 322
BshNI GGYRCC 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 72
BsmI GAATGC 1 cut(s) 92
Bsp143I GATC 1 cut(s) 41
BspCNI CTCAG 3 cut(s) 127, 187, 347
BspLI GGNNCC 1 cut(s) 279
BspT107I GGYRCC 1 cut(s) 277
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 70, 156
Bst6I CTCTTC 1 cut(s) 392
BstAPI GCANNNNNTGC 1 cut(s) 442
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 4 cut(s) 114, 135, 174, 334
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 1 cut(s) 44
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 1 cut(s) 41
BstMWI GCNNNNNNNGC 1 cut(s) 442
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 100
BstSFI CTRYAG 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 69
BtsCI GGATG 1 cut(s) 94
BtsIMutI CAGTG 2 cut(s) 66, 297
Cac8I GCNNGC 1 cut(s) 185
CviAII CATG 2 cut(s) 97, 503
CviJI RGCY 6 cut(s) 106, 118, 254, 304, 314, 470
CviKI_1 RGCY 6 cut(s) 106, 118, 254, 304, 314, 470
DdeI CTNAG 4 cut(s) 114, 135, 174, 334
DpnI GATC 1 cut(s) 43
DpnII GATC 1 cut(s) 41
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 405
EcoRI GAATTC 1 cut(s) 463
EcoRII CCWGG 1 cut(s) 100
EcoT22I ATGCAT 1 cut(s) 94
FaeI CATG 2 cut(s) 100, 506
FalI AAGNNNNNCTT 1 cut(s) 38
FatI CATG 2 cut(s) 96, 502
FokI GGATG 1 cut(s) 101
GsuI CTGGAG 1 cut(s) 339
Hin1II CATG 2 cut(s) 100, 506
HindIII AAGCTT 1 cut(s) 116
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 494
Hpy188I TCNGA 6 cut(s) 52, 88, 160, 177, 241, 385
Hpy188III TCNNGA 1 cut(s) 356
Hpy8I GTNNAC 1 cut(s) 494
HpyCH4III ACNGT 2 cut(s) 70, 156
HpyCH4V TGCA 6 cut(s) 92, 145, 183, 436, 445, 502
HpyF10VI GCNNNNNNNGC 1 cut(s) 442
HpyF3I CTNAG 4 cut(s) 114, 135, 174, 334
Hsp92II CATG 2 cut(s) 100, 506
Kzo9I GATC 1 cut(s) 41
LpnPI CCDG 5 cut(s) 87, 114, 285, 369, 456
LweI GCATC 2 cut(s) 56, 79
MaeIII GTNAC 1 cut(s) 373
MalI GATC 1 cut(s) 43
MboI GATC 1 cut(s) 41
MboII GAAGA 3 cut(s) 74, 406, 409
MfeI CAATTG 2 cut(s) 27, 140
MluCI AATT 5 cut(s) 27, 140, 324, 361, 463
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 3 cut(s) 268, 304, 343
Mph1103I ATGCAT 1 cut(s) 94
MseI TTAA 1 cut(s) 206
MspA1I CMGCKG 1 cut(s) 470
MspR9I CCNGG 1 cut(s) 102
MunI CAATTG 2 cut(s) 27, 140
Mva1269I GAATGC 1 cut(s) 92
MvaI CCWGG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 442
NdeII GATC 1 cut(s) 41
NlaIII CATG 2 cut(s) 100, 506
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 373
NsiI ATGCAT 1 cut(s) 94
PctI GAATGC 1 cut(s) 92
PsiI TTATAA 1 cut(s) 513
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 279
PvuII CAGCTG 1 cut(s) 470
SaqAI TTAA 1 cut(s) 206
Sau3AI GATC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 102
SetI ASST 5 cut(s) 120, 256, 279, 472, 493
SfaNI GCATC 2 cut(s) 56, 79
SfcI CTRYAG 1 cut(s) 57
Sse9I AATT 5 cut(s) 27, 140, 324, 361, 463
SspI AATATT 1 cut(s) 193
StyD4I CCNGG 1 cut(s) 100
TaaI ACNGT 2 cut(s) 70, 156
TaqI TCGA 1 cut(s) 273
TasI AATT 5 cut(s) 27, 140, 324, 361, 463
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TscAI CASTG 2 cut(s) 73, 304
TseFI GTSAC 1 cut(s) 373
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 5 cut(s) 85, 99, 282, 407, 471
TspRI CASTG 2 cut(s) 73, 304
XapI RAATTY 2 cut(s) 361, 463
Zsp2I ATGCAT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.