RNA recognition motif
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G23370 AT3G23370 AT3G23370 AT3G23370 |
| fragaria_vesca | FvH4_4g02261 FvH4_4g03920 |
| malus_domestica | MD16G1220900.v1.1 |
| prunus_persica | Prupe.1G041400_v2.0.a1 Prupe.1G041400_v2.0.a1 |
| pyrus_communis | pycom16g18530 |
| rosa_chinensis | RchiOBHm_Chr1g0364771 RchiOBHm_Chr4g0393941 RchiOBHm_Chr6g0277021 |
| rosa_laevigata | RLG00000009724 RLG00000024329 |
| rosa_multiflora | Rmu_co8066178.1_g000001 Rmu_sc0003401.1_g000010 Rmu_sc0007642.1_g000001 Rmu_sc0007642.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00325220 Rroxscaffold_5G00339020 Rroxscaffold_6G00405510 Rroxscaffold_7G00190440 |
| rosa_rugosa | Rorug03G0370000.1 Rorug03G0370100.1 Rorug06G0419300 |
| rosa_samantha | Rh4AG049700 Rh4BG046200 Rh4CG053300 Rh4DG046900 |
| rosa_wichuraiana | Rw4G003940 Rw6G019670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 292 |
| AcsI | RAATTY | 1 cut(s) | 478 |
| AcuI | CTGAAG | 1 cut(s) | 420 |
| AgsI | TTSAA | 7 cut(s) | 27, 213, 409, 539, 566, 713, 775 |
| AjnI | CCWGG | 2 cut(s) | 100, 832 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 26, 58, 542, 574 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 546, 578, 634, 666 |
| AluBI | AGCT | 7 cut(s) | 118, 195, 202, 485, 558, 626, 805 |
| AluI | AGCT | 7 cut(s) | 118, 195, 202, 485, 558, 626, 805 |
| Alw26I | GTCTC | 1 cut(s) | 72 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 620 |
| AoxI | GGCC | 1 cut(s) | 786 |
| ApeKI | GCWGC | 1 cut(s) | 623 |
| ApoI | RAATTY | 1 cut(s) | 478 |
| AsuHPI | GGTGA | 2 cut(s) | 335, 434 |
| BanI | GGYRCC | 1 cut(s) | 292 |
| BbsI | GAAGAC | 1 cut(s) | 69 |
| BbvCI | CCTCAGC | 1 cut(s) | 349 |
| BbvI | GCAGC | 1 cut(s) | 635 |
| BciT130I | CCWGG | 2 cut(s) | 102, 834 |
| BcoDI | GTCTC | 1 cut(s) | 72 |
| BfmI | CTRYAG | 3 cut(s) | 57, 621, 778 |
| BisI | GCNGC | 1 cut(s) | 624 |
| BlsI | GCNGC | 1 cut(s) | 625 |
| Bme1390I | CCNGG | 2 cut(s) | 102, 834 |
| BmiI | GGNNCC | 2 cut(s) | 294, 576 |
| BmrFI | CCNGG | 2 cut(s) | 102, 834 |
| BmsI | GCATC | 3 cut(s) | 56, 79, 256 |
| BpiI | GAAGAC | 1 cut(s) | 69 |
| BpmI | CTGGAG | 1 cut(s) | 741 |
| Bpu10I | CCTNAGC | 1 cut(s) | 349 |
| BpuEI | CTTGAG | 1 cut(s) | 722 |
| BsaJI | CCNNGG | 3 cut(s) | 101, 570, 654 |
| Bse1I | ACTGG | 1 cut(s) | 232 |
| BseBI | CCWGG | 2 cut(s) | 102, 834 |
| BseDI | CCNNGG | 3 cut(s) | 101, 570, 654 |
| BseGI | GGATG | 1 cut(s) | 94 |
| BseMII | CTCAG | 5 cut(s) | 126, 203, 363, 675, 806 |
| BseNI | ACTGG | 1 cut(s) | 232 |
| BseRI | GAGGAG | 2 cut(s) | 337, 744 |
| BseXI | GCAGC | 1 cut(s) | 635 |
| BshFI | GGCC | 1 cut(s) | 788 |
| BshNI | GGYRCC | 1 cut(s) | 292 |
| BsmAI | GTCTC | 1 cut(s) | 72 |
| BsmI | GAATGC | 1 cut(s) | 92 |
| BsnI | GGCC | 1 cut(s) | 788 |
| BspANI | GGCC | 1 cut(s) | 788 |
| BspCNI | CTCAG | 5 cut(s) | 127, 202, 362, 676, 805 |
| BspLI | GGNNCC | 2 cut(s) | 294, 576 |
| BspMAI | CTGCAG | 1 cut(s) | 625 |
| BspT107I | GGYRCC | 1 cut(s) | 292 |
| BsrI | ACTGG | 1 cut(s) | 232 |
| BssECI | CCNNGG | 3 cut(s) | 101, 570, 654 |
| BssT1I | CCWWGG | 2 cut(s) | 570, 654 |
| Bst2UI | CCWGG | 2 cut(s) | 102, 834 |
| Bst4CI | ACNGT | 3 cut(s) | 70, 156, 779 |
| Bst6I | CTCTTC | 2 cut(s) | 407, 751 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 457 |
| BstC8I | GCNNGC | 1 cut(s) | 786 |
| BstDEI | CTNAG | 6 cut(s) | 114, 135, 189, 349, 684, 792 |
| BstF5I | GGATG | 1 cut(s) | 94 |
| BstMAI | GTCTC | 1 cut(s) | 72 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 457, 802 |
| BstNI | CCWGG | 2 cut(s) | 102, 834 |
| BstSCI | CCNGG | 2 cut(s) | 100, 832 |
| BstSFI | CTRYAG | 3 cut(s) | 57, 621, 778 |
| BstV1I | GCAGC | 1 cut(s) | 635 |
| BstV2I | GAAGAC | 1 cut(s) | 69 |
| BsuRI | GGCC | 1 cut(s) | 788 |
| BtsCI | GGATG | 1 cut(s) | 94 |
| BtsIMutI | CAGTG | 1 cut(s) | 66 |
| Cac8I | GCNNGC | 1 cut(s) | 786 |
| CaiI | CAGNNNCTG | 1 cut(s) | 620 |
| CviAII | CATG | 3 cut(s) | 97, 518, 542 |
| DdeI | CTNAG | 6 cut(s) | 114, 135, 189, 349, 684, 792 |
| DraI | TTTAAA | 1 cut(s) | 529 |
| Eam1104I | CTCTTC | 2 cut(s) | 407, 751 |
| EarI | CTCTTC | 2 cut(s) | 407, 751 |
| Eco130I | CCWWGG | 2 cut(s) | 570, 654 |
| Eco147I | AGGCCT | 1 cut(s) | 788 |
| Eco57I | CTGAAG | 1 cut(s) | 420 |
| EcoRI | GAATTC | 1 cut(s) | 478 |
| EcoRII | CCWGG | 2 cut(s) | 100, 832 |
| EcoT14I | CCWWGG | 2 cut(s) | 570, 654 |
| EcoT22I | ATGCAT | 1 cut(s) | 94 |
| ErhI | CCWWGG | 2 cut(s) | 570, 654 |
| FaeI | CATG | 3 cut(s) | 100, 521, 545 |
| FatI | CATG | 3 cut(s) | 96, 517, 541 |
| Fnu4HI | GCNGC | 1 cut(s) | 624 |
| FokI | GGATG | 1 cut(s) | 101 |
| Fsp4HI | GCNGC | 1 cut(s) | 624 |
| GluI | GCNGC | 1 cut(s) | 624 |
| GsuI | CTGGAG | 1 cut(s) | 741 |
| HaeIII | GGCC | 1 cut(s) | 788 |
| Hin1II | CATG | 3 cut(s) | 100, 521, 545 |
| HindIII | AAGCTT | 2 cut(s) | 116, 556 |
| HinfI | GANTC | 3 cut(s) | 587, 675, 686 |
| HphI | GGTGA | 2 cut(s) | 335, 434 |
| Hpy166II | GTNNAC | 1 cut(s) | 509 |
| Hpy188I | TCNGA | 6 cut(s) | 52, 88, 160, 192, 256, 400 |
| Hpy188III | TCNNGA | 3 cut(s) | 672, 718, 758 |
| Hpy8I | GTNNAC | 1 cut(s) | 509 |
| HpyCH4III | ACNGT | 3 cut(s) | 70, 156, 779 |
| HpyCH4V | TGCA | 6 cut(s) | 92, 145, 451, 460, 517, 623 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 457, 802 |
| HpyF3I | CTNAG | 6 cut(s) | 114, 135, 189, 349, 684, 792 |
| Hsp92II | CATG | 3 cut(s) | 100, 521, 545 |
| LmnI | GCTCC | 1 cut(s) | 274 |
| Lsp1109I | GCAGC | 1 cut(s) | 635 |
| LweI | GCATC | 3 cut(s) | 56, 79, 256 |
| MaeIII | GTNAC | 3 cut(s) | 388, 610, 687 |
| MboII | GAAGA | 4 cut(s) | 74, 421, 424, 738 |
| MfeI | CAATTG | 1 cut(s) | 27 |
| MluCI | AATT | 5 cut(s) | 27, 339, 376, 478, 708 |
| MlyI | GAGTC | 2 cut(s) | 684, 695 |
| MmeI | TCCRAC | 2 cut(s) | 55, 716 |
| MnlI | CCTC | 8 cut(s) | 283, 319, 358, 697, 732, 765, 799, 840 |
| Mph1103I | ATGCAT | 1 cut(s) | 94 |
| MseI | TTAA | 2 cut(s) | 221, 528 |
| MslI | CAYNNNNRTG | 1 cut(s) | 597 |
| MspA1I | CMGCKG | 1 cut(s) | 485 |
| MspR9I | CCNGG | 2 cut(s) | 102, 834 |
| MunI | CAATTG | 1 cut(s) | 27 |
| Mva1269I | GAATGC | 1 cut(s) | 92 |
| MvaI | CCWGG | 2 cut(s) | 102, 834 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 457, 802 |
| NlaIII | CATG | 3 cut(s) | 100, 521, 545 |
| NlaIV | GGNNCC | 2 cut(s) | 294, 576 |
| NmuCI | GTSAC | 2 cut(s) | 388, 687 |
| NsiI | ATGCAT | 1 cut(s) | 94 |
| PceI | AGGCCT | 1 cut(s) | 788 |
| PctI | GAATGC | 1 cut(s) | 92 |
| PfeI | GAWTC | 1 cut(s) | 587 |
| PkrI | GCNGC | 1 cut(s) | 625 |
| PleI | GAGTC | 2 cut(s) | 683, 694 |
| PpsI | GAGTC | 2 cut(s) | 683, 694 |
| Psp6I | CCWGG | 2 cut(s) | 100, 832 |
| PspGI | CCWGG | 2 cut(s) | 100, 832 |
| PspN4I | GGNNCC | 2 cut(s) | 294, 576 |
| PstI | CTGCAG | 1 cut(s) | 625 |
| PstNI | CAGNNNCTG | 1 cut(s) | 620 |
| PvuII | CAGCTG | 1 cut(s) | 485 |
| RseI | CAYNNNNRTG | 1 cut(s) | 597 |
| SaqAI | TTAA | 2 cut(s) | 221, 528 |
| SatI | GCNGC | 1 cut(s) | 624 |
| SchI | GAGTC | 2 cut(s) | 684, 695 |
| ScrFI | CCNGG | 2 cut(s) | 102, 834 |
| SfaNI | GCATC | 3 cut(s) | 56, 79, 256 |
| SfcI | CTRYAG | 3 cut(s) | 57, 621, 778 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 597 |
| SmlI | CTYRAG | 1 cut(s) | 701 |
| SmoI | CTYRAG | 1 cut(s) | 701 |
| Sse9I | AATT | 5 cut(s) | 27, 339, 376, 478, 708 |
| SseBI | AGGCCT | 1 cut(s) | 788 |
| SspI | AATATT | 1 cut(s) | 208 |
| StuI | AGGCCT | 1 cut(s) | 788 |
| StyD4I | CCNGG | 2 cut(s) | 100, 832 |
| StyI | CCWWGG | 2 cut(s) | 570, 654 |
| TaaI | ACNGT | 3 cut(s) | 70, 156, 779 |
| TaqI | TCGA | 1 cut(s) | 288 |
| TasI | AATT | 5 cut(s) | 27, 339, 376, 478, 708 |
| TfiI | GAWTC | 1 cut(s) | 587 |
| Tru1I | TTAA | 2 cut(s) | 221, 528 |
| Tru9I | TTAA | 2 cut(s) | 221, 528 |
| TscAI | CASTG | 1 cut(s) | 73 |
| TseFI | GTSAC | 2 cut(s) | 388, 687 |
| TseI | GCWGC | 1 cut(s) | 623 |
| Tsp45I | GTSAC | 2 cut(s) | 388, 687 |
| TspDTI | ATGAA | 6 cut(s) | 85, 99, 297, 486, 563, 815 |
| TspRI | CASTG | 1 cut(s) | 73 |
| XapI | RAATTY | 1 cut(s) | 478 |
| Zsp2I | ATGCAT | 1 cut(s) | 94 |