Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004450

Physical Location & Seq

Genomic Coordinates Forward (+)

55828841 .. 55830374

Gene Structure 1534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0419300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCATCTTCGAGTGGAAACTCGTCCGGCTCTCAGCTTCTTCAGAATTCCGGGTCCGAAGGGGACCTTCAGCATGTGATGGATCAGCGAAAGAGGAAGAGAATGCAGTCCAACCGGGAATCGGCGCGGCGGTCGCGGATGCGAAAACAGCAGCACTTGGATGAGCTGACGGCTCAGGTGACCCAGCTGAGGAAGGAAAACGGTCAAATCCTGACCAGCATAAACATCACCACCCAGCACTACATGAACGTGGAGGCCGAGAATTCGGTTCTCAGGGCCCAGATGGCGGAGCTCAGCCAGAGACTGGAGTCTCTGACCGAGATCCTCAACTATATCAACGGCAACAATAATAATGGGGTGTTTGAAACCGAACCGGGCCAGCTGCTTCAGACCGGCTCCACCGCTGCTGATCATAATAGCTTCATGAACCCTTGGAATAATTCGCTCTATTCAAACCAGCCCATCATGGCAGCTGCAGACATGCTTCAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.48

Weight (kDa)

6.42

Isoelectric Point (pI)

57.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	28 - 72	9.7e-08	Basic region leucine zipper
bZIP_1	PF00170	30 - 84	3.4e-11	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23370 AT3G23370 AT3G23370 AT3G23370
fragaria_vesca	FvH4_4g02261 FvH4_4g03920
malus_domestica	MD16G1220900.v1.1
prunus_persica	Prupe.1G041400_v2.0.a1 Prupe.1G041400_v2.0.a1
pyrus_communis	pycom16g18530
rosa_chinensis	RchiOBHm_Chr1g0364771 RchiOBHm_Chr4g0393941 RchiOBHm_Chr6g0277021
rosa_laevigata	RLG00000009724 RLG00000024329
rosa_multiflora	Rmu_co8066178.1_g000001 Rmu_sc0003401.1_g000010 Rmu_sc0007642.1_g000001 Rmu_sc0007642.1_g000002
rosa_roxburghii	Rroxscaffold_4G00325220 Rroxscaffold_5G00339020 Rroxscaffold_6G00405510 Rroxscaffold_7G00190440
rosa_rugosa	Rorug03G0370000.1 Rorug03G0370100.1 Rorug06G0419300
rosa_samantha	Rh4AG049700 Rh4BG046200 Rh4CG053300 Rh4DG046900
rosa_wichuraiana	Rw4G003940 Rw6G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	304
AccII	CGCG	2 cut(s)	127, 136
AciI	CCGC	5 cut(s)	127, 130, 136, 287, 402
AclWI	GGATC	2 cut(s)	90, 316
AcsI	RAATTY	2 cut(s)	46, 262
AcuI	CTGAAG	4 cut(s)	26, 53, 371, 470
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	4 cut(s)	121, 189, 286, 304
AgsI	TTSAA	2 cut(s)	365, 453
AluBI	AGCT	7 cut(s)	37, 166, 187, 292, 382, 420, 473
AluI	AGCT	7 cut(s)	37, 166, 187, 292, 382, 420, 473
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	2 cut(s)	295, 315
AlwI	GGATC	2 cut(s)	90, 316
AlwNI	CAGNNNCTG	1 cut(s)	304
AoxI	GGCC	3 cut(s)	255, 276, 376
ApaI	GGGCCC	1 cut(s)	280
ApeKI	GCWGC	5 cut(s)	151, 382, 404, 470, 473
ApoI	RAATTY	2 cut(s)	46, 262
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	5 cut(s)	54, 64, 276, 277, 376
AsuC2I	CCSGG	3 cut(s)	52, 116, 375
AsuHPI	GGTGA	2 cut(s)	190, 220
AvaII	GGWCC	2 cut(s)	54, 64
BaeGI	GKGCMC	1 cut(s)	280
BanII	GRGCYC	2 cut(s)	280, 294
Bbv12I	GWGCWC	1 cut(s)	294
BbvCI	CCTCAGC	1 cut(s)	188
BbvI	GCAGC	5 cut(s)	163, 369, 391, 460, 482
BccI	CCATC	3 cut(s)	73, 277, 470
BceAI	ACGGC	2 cut(s)	186, 355
BclI	TGATCA	1 cut(s)	409
BcnI	CCSGG	3 cut(s)	52, 116, 375
BcoDI	GTCTC	2 cut(s)	295, 315
BfmI	CTRYAG	1 cut(s)	474
BglI	GCCNNNNNGGC	1 cut(s)	284
BisI	GCNGC	6 cut(s)	128, 152, 383, 405, 471, 474
BlpI	GCTNAGC	1 cut(s)	293
BlsI	GCNGC	6 cut(s)	129, 153, 384, 406, 472, 475
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	3 cut(s)	52, 116, 375
Bme18I	GGWCC	2 cut(s)	54, 64
BmgT120I	GGNCC	5 cut(s)	54, 64, 276, 277, 376
BmiI	GGNNCC	4 cut(s)	55, 65, 278, 397
BmrFI	CCNGG	3 cut(s)	52, 116, 375
BmsI	GCATC	2 cut(s)	14, 129
BoxI	GACNNNNGTC	1 cut(s)	307
BpmI	CTGGAG	1 cut(s)	326
Bpu10I	CCTNAGC	2 cut(s)	174, 188
Bpu1102I	GCTNAGC	1 cut(s)	293
BpuMI	CCSGG	3 cut(s)	52, 116, 375
BsaJI	CCNNGG	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 189, 286, 304
Bse118I	RCCGGY	1 cut(s)	392
Bse1I	ACTGG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	2 cut(s)	144, 166
BseLI	CCNNNNNNNGG	4 cut(s)	121, 189, 286, 304
BseMII	CTCAG	5 cut(s)	47, 179, 188, 286, 307
BseNI	ACTGG	1 cut(s)	309
BseSI	GKGCMC	1 cut(s)	280
BseXI	GCAGC	5 cut(s)	163, 369, 391, 460, 482
BseYI	CCCAGC	2 cut(s)	183, 234
Bsh1236I	CGCG	2 cut(s)	127, 136
Bsh1285I	CGRYCG	1 cut(s)	134
BshFI	GGCC	3 cut(s)	257, 278, 378
BsiEI	CGRYCG	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	5 cut(s)	27, 51, 115, 374, 393
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	4 cut(s)	121, 189, 286, 304
BsmAI	GTCTC	2 cut(s)	295, 315
BsmFI	GGGAC	1 cut(s)	77
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	3 cut(s)	257, 278, 378
Bsp120I	GGGCCC	1 cut(s)	276
Bsp1286I	GDGCHC	2 cut(s)	280, 294
Bsp143I	GATC	3 cut(s)	82, 321, 409
Bsp1720I	GCTNAGC	1 cut(s)	293
BspACI	CCGC	5 cut(s)	127, 130, 136, 287, 402
BspANI	GGCC	3 cut(s)	257, 278, 378
BspCNI	CTCAG	5 cut(s)	46, 180, 187, 285, 306
BspFNI	CGCG	2 cut(s)	127, 136
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	4 cut(s)	55, 65, 278, 397
BspMAI	CTGCAG	1 cut(s)	478
BspPI	GGATC	2 cut(s)	90, 316
BsrFI	RCCGGY	1 cut(s)	392
BsrI	ACTGG	1 cut(s)	309
BssAI	RCCGGY	1 cut(s)	392
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	3 cut(s)	82, 321, 409
BssT1I	CCWWGG	1 cut(s)	431
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	5 cut(s)	33, 174, 188, 272, 293
BstEII	GGTNACC	1 cut(s)	178
BstF5I	GGATG	2 cut(s)	144, 166
BstFNI	CGCG	2 cut(s)	127, 136
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	3 cut(s)	85, 324, 412
BstMAI	GTCTC	2 cut(s)	295, 315
BstMBI	GATC	3 cut(s)	82, 321, 409
BstMCI	CGRYCG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 148, 284
BstNSI	RCATGY	2 cut(s)	77, 484
BstPAI	GACNNNNGTC	1 cut(s)	307
BstPI	GGTNACC	1 cut(s)	178
BstSCI	CCNGG	3 cut(s)	50, 114, 373
BstSFI	CTRYAG	1 cut(s)	474
BstSLI	GKGCMC	1 cut(s)	280
BstUI	CGCG	2 cut(s)	127, 136
BstV1I	GCAGC	5 cut(s)	163, 369, 391, 460, 482
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
BsuRI	GGCC	3 cut(s)	257, 278, 378
BtsCI	GGATG	2 cut(s)	144, 166
Cac8I	GCNNGC	1 cut(s)	380
CaiI	CAGNNNCTG	1 cut(s)	304
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	1 cut(s)	127
Cfr10I	RCCGGY	1 cut(s)	392
Cfr13I	GGNCC	5 cut(s)	54, 64, 276, 277, 376
Csp6I	GTAC	1 cut(s)	490
CviAII	CATG	5 cut(s)	74, 244, 424, 466, 481
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	5 cut(s)	33, 174, 188, 272, 293
DpnI	GATC	3 cut(s)	84, 323, 411
DpnII	GATC	3 cut(s)	82, 321, 409
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
EciI	GGCGGA	1 cut(s)	302
Ecl136II	GAGCTC	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	431
Eco24I	GRGCYC	2 cut(s)	280, 294
Eco47I	GGWCC	2 cut(s)	54, 64
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	4 cut(s)	26, 53, 371, 470
Eco91I	GGTNACC	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	292
EcoO109I	RGGNCCY	2 cut(s)	64, 276
EcoO65I	GGTNACC	1 cut(s)	178
EcoRI	GAATTC	2 cut(s)	46, 262
EcoT14I	CCWWGG	1 cut(s)	431
EcoT38I	GRGCYC	2 cut(s)	280, 294
ErhI	CCWWGG	1 cut(s)	431
FaeI	CATG	5 cut(s)	77, 247, 427, 469, 484
FaiI	YATR	8 cut(s)	75, 221, 245, 333, 414, 425, 467, 482
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	5 cut(s)	73, 243, 423, 465, 480
FbaI	TGATCA	1 cut(s)	409
Fnu4HI	GCNGC	6 cut(s)	128, 152, 383, 405, 471, 474
FokI	GGATG	2 cut(s)	151, 173
FriOI	GRGCYC	2 cut(s)	280, 294
Fsp4HI	GCNGC	6 cut(s)	128, 152, 383, 405, 471, 474
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	6 cut(s)	128, 152, 383, 405, 471, 474
GsaI	CCCAGC	2 cut(s)	187, 238
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	3 cut(s)	257, 278, 378
HapII	CCGG	5 cut(s)	27, 51, 115, 374, 393
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	5 cut(s)	77, 247, 427, 469, 484
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HinfI	GANTC	2 cut(s)	119, 308
HpaII	CCGG	5 cut(s)	27, 51, 115, 374, 393
HphI	GGTGA	2 cut(s)	190, 220
Hpy188I	TCNGA	4 cut(s)	45, 58, 315, 390
Hpy188III	TCNNGA	2 cut(s)	211, 424
HpyAV	CCTTC	3 cut(s)	53, 77, 187
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	2 cut(s)	106, 476
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 148, 284
HpyF3I	CTNAG	5 cut(s)	33, 174, 188, 272, 293
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	5 cut(s)	77, 247, 427, 469, 484
HspAI	GCGC	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	3 cut(s)	82, 321, 409
LmnI	GCTCC	2 cut(s)	289, 401
Lsp1109I	GCAGC	5 cut(s)	163, 369, 391, 460, 482
LweI	GCATC	2 cut(s)	14, 129
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	3 cut(s)	84, 323, 411
MboI	GATC	3 cut(s)	82, 321, 409
MboII	GAAGA	2 cut(s)	32, 109
MflI	RGATCY	1 cut(s)	321
MhlI	GDGCHC	2 cut(s)	280, 294
MluCI	AATT	3 cut(s)	46, 262, 439
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	4 cut(s)	87, 183, 247, 335
MslI	CAYNNNNRTG	2 cut(s)	159, 248
MspA1I	CMGCKG	4 cut(s)	187, 382, 404, 473
MspI	CCGG	5 cut(s)	27, 51, 115, 374, 393
MspR9I	CCNGG	3 cut(s)	52, 116, 375
Mva1269I	GAATGC	1 cut(s)	108
MvnI	CGCG	2 cut(s)	127, 136
MwoI	GCNNNNNNNGC	3 cut(s)	133, 148, 284
NciI	CCSGG	3 cut(s)	52, 116, 375
NdeII	GATC	3 cut(s)	82, 321, 409
NlaIII	CATG	5 cut(s)	77, 247, 427, 469, 484
NlaIV	GGNNCC	4 cut(s)	55, 65, 278, 397
NmeAIII	GCCGAG	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	2 cut(s)	77, 484
PagI	TCATGA	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PctI	GAATGC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	304
PkrI	GCNGC	6 cut(s)	129, 153, 384, 406, 472, 475
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PpuMI	RGGWCCY	1 cut(s)	64
PshAI	GACNNNNGTC	1 cut(s)	307
Psp124BI	GAGCTC	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	64
PspEI	GGTNACC	1 cut(s)	178
PspFI	CCCAGC	2 cut(s)	183, 234
PspN4I	GGNNCC	4 cut(s)	55, 65, 278, 397
PspOMI	GGGCCC	1 cut(s)	276
PspPI	GGNCC	5 cut(s)	54, 64, 276, 277, 376
PspPPI	RGGWCCY	1 cut(s)	64
PstI	CTGCAG	1 cut(s)	478
PstNI	CAGNNNCTG	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	321
PvuII	CAGCTG	3 cut(s)	187, 382, 473
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	2 cut(s)	159, 248
SacI	GAGCTC	1 cut(s)	294
SatI	GCNGC	6 cut(s)	128, 152, 383, 405, 471, 474
Sau3AI	GATC	3 cut(s)	82, 321, 409
Sau96I	GGNCC	5 cut(s)	54, 64, 276, 277, 376
ScaI	AGTACT	1 cut(s)	491
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	3 cut(s)	52, 116, 375
SduI	GDGCHC	2 cut(s)	280, 294
SfaNI	GCATC	2 cut(s)	14, 129
SfcI	CTRYAG	1 cut(s)	474
SinI	GGWCC	2 cut(s)	54, 64
SmiMI	CAYNNNNRTG	2 cut(s)	159, 248
Sse9I	AATT	3 cut(s)	46, 262, 439
SsiI	CCGC	5 cut(s)	127, 130, 136, 287, 402
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	3 cut(s)	50, 114, 373
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	11
TaqII	GACCGA	1 cut(s)	332
TasI	AATT	3 cut(s)	46, 262, 439
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	1 cut(s)	130
TfiI	GAWTC	1 cut(s)	119
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	5 cut(s)	151, 382, 404, 470, 473
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	3 cut(s)	260, 412, 440
Van91I	CCANNNNNTGG	1 cut(s)	304
VpaK11BI	GGWCC	2 cut(s)	54, 64
XapI	RAATTY	2 cut(s)	46, 262
XceI	RCATGY	2 cut(s)	77, 484
ZrmI	AGTACT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.