Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007642.1

Orthogroup ID

OG0004450

Physical Location & Seq

Genomic Coordinates Forward (+)

9503 .. 10246

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007642.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atgcctgggctttcatctaagcttgtgcttgataaaactgggcaattgcataagaaactgtcagatattcagtctgaatatgataggaactctcagagctgcaagcagaatatttcaacagatttaagaactgacatagtaagggagaactctttatctaatgtgcttgaagctactgcttctaatgaagtcgaggtgcctaaatctttagatagcactggacctggtgaggctaaaaatacaattcactcctcagcagatatagttttttctccagagaatctggttgctgtaactatttctgaagttatgaggaagagtgttagtgaaaataaatcaacaagtgataagttgcatataatgcagaaaagttctatggggggttcagctggtcaagtttcatctaaaggtaaacgggtgcatggtggttataaagatgttgaacatggtatgaatggaagcttggttcaaaccttggaaccattcacagattctcacaacaatgagaaaagggttacagaaactgcagcatccaatataatatggaaaagatgttccaaggataaaggtcaatcaggtgtcaagcctgagtcacataggcaacttcaggaaattgaagtcatgaaaacccaaagcagttggaggtttccttcaactcctctagatactactatgttgaactgtaggcaggcctctcagcctatgaagctatggcgatcactttttctcatttctcctggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

247

Amino Acids

27.2

Weight (kDa)

8.9

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23370 AT3G23370 AT3G23370 AT3G23370
fragaria_vesca	FvH4_4g02261 FvH4_4g03920
malus_domestica	MD16G1220900.v1.1
prunus_persica	Prupe.1G041400_v2.0.a1 Prupe.1G041400_v2.0.a1
pyrus_communis	pycom16g18530
rosa_chinensis	RchiOBHm_Chr1g0364771 RchiOBHm_Chr4g0393941 RchiOBHm_Chr6g0277021
rosa_laevigata	RLG00000009724 RLG00000024329
rosa_multiflora	Rmu_co8066178.1_g000001 Rmu_sc0003401.1_g000010 Rmu_sc0007642.1_g000001 Rmu_sc0007642.1_g000002
rosa_roxburghii	Rroxscaffold_4G00325220 Rroxscaffold_5G00339020 Rroxscaffold_6G00405510 Rroxscaffold_7G00190440
rosa_rugosa	Rorug03G0370000.1 Rorug03G0370100.1 Rorug06G0419300
rosa_samantha	Rh4AG049700 Rh4BG046200 Rh4CG053300 Rh4DG046900
rosa_wichuraiana	Rw4G003940 Rw6G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
AccB1I	GGYRCC	1 cut(s)	196
AcuI	CTGAAG	2 cut(s)	324, 590
AgsI	TTSAA	7 cut(s)	117, 170, 443, 470, 617, 654, 679
AjnI	CCWGG	3 cut(s)	4, 223, 736
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AloI	GAACNNNNNNTCC	4 cut(s)	450, 482, 538, 570
AluBI	AGCT	6 cut(s)	22, 99, 173, 389, 462, 709
AluI	AGCT	6 cut(s)	22, 99, 173, 389, 462, 709
AlwNI	CAGNNNCTG	1 cut(s)	524
AoxI	GGCC	1 cut(s)	690
ApeKI	GCWGC	2 cut(s)	99, 527
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	196
BbvCI	CCTCAGC	1 cut(s)	253
BbvI	GCAGC	2 cut(s)	86, 539
BciT130I	CCWGG	3 cut(s)	6, 225, 738
BfaI	CTAG	1 cut(s)	662
BfmI	CTRYAG	2 cut(s)	525, 682
BisI	GCNGC	2 cut(s)	100, 528
BlsI	GCNGC	2 cut(s)	101, 529
Bme1390I	CCNGG	3 cut(s)	6, 225, 738
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	2 cut(s)	198, 480
BmrFI	CCNGG	3 cut(s)	6, 225, 738
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	539
BmuI	ACTGGG	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	253
BsaJI	CCNNGG	3 cut(s)	5, 474, 558
Bse1I	ACTGG	2 cut(s)	43, 223
BseBI	CCWGG	3 cut(s)	6, 225, 738
BseDI	CCNNGG	3 cut(s)	5, 474, 558
BseGI	GGATG	1 cut(s)	530
BseMII	CTCAG	4 cut(s)	107, 267, 579, 710
BseNI	ACTGG	2 cut(s)	43, 223
BseRI	GAGGAG	2 cut(s)	241, 648
BseXI	GCAGC	2 cut(s)	86, 539
BshFI	GGCC	1 cut(s)	692
BshNI	GGYRCC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	692
Bsp143I	GATC	1 cut(s)	716
BspANI	GGCC	1 cut(s)	692
BspCNI	CTCAG	4 cut(s)	106, 266, 580, 709
BspHI	TCATGA	1 cut(s)	621
BspLI	GGNNCC	2 cut(s)	198, 480
BspMAI	CTGCAG	1 cut(s)	529
BspT107I	GGYRCC	1 cut(s)	196
BsrI	ACTGG	2 cut(s)	43, 223
BssECI	CCNNGG	3 cut(s)	5, 474, 558
BssMI	GATC	1 cut(s)	716
BssT1I	CCWWGG	2 cut(s)	474, 558
Bst2UI	CCWGG	3 cut(s)	6, 225, 738
Bst4CI	ACNGT	2 cut(s)	60, 683
Bst6I	CTCTTC	1 cut(s)	311
BstAPI	GCANNNNNTGC	1 cut(s)	361
BstC8I	GCNNGC	2 cut(s)	104, 690
BstDEI	CTNAG	5 cut(s)	18, 93, 253, 588, 696
BstF5I	GGATG	1 cut(s)	530
BstKTI	GATC	1 cut(s)	719
BstMBI	GATC	1 cut(s)	716
BstMWI	GCNNNNNNNGC	2 cut(s)	361, 706
BstNI	CCWGG	3 cut(s)	6, 225, 738
BstSCI	CCNGG	3 cut(s)	4, 223, 736
BstSFI	CTRYAG	2 cut(s)	525, 682
BstV1I	GCAGC	2 cut(s)	86, 539
BsuRI	GGCC	1 cut(s)	692
BtsCI	GGATG	1 cut(s)	530
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	2 cut(s)	104, 690
CaiI	CAGNNNCTG	1 cut(s)	524
CciI	TCATGA	1 cut(s)	621
Cfr13I	GGNCC	1 cut(s)	221
CsiI	ACCWGGT	1 cut(s)	223
CviAII	CATG	3 cut(s)	422, 446, 622
DdeI	CTNAG	5 cut(s)	18, 93, 253, 588, 696
DpnI	GATC	1 cut(s)	718
DpnII	GATC	1 cut(s)	716
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco130I	CCWWGG	2 cut(s)	474, 558
Eco147I	AGGCCT	1 cut(s)	692
Eco47I	GGWCC	1 cut(s)	221
Eco57I	CTGAAG	2 cut(s)	324, 590
EcoRII	CCWGG	3 cut(s)	4, 223, 736
EcoT14I	CCWWGG	2 cut(s)	474, 558
ErhI	CCWWGG	2 cut(s)	474, 558
FaeI	CATG	3 cut(s)	425, 449, 625
FatI	CATG	3 cut(s)	421, 445, 621
Fnu4HI	GCNGC	2 cut(s)	100, 528
FokI	GGATG	1 cut(s)	517
Fsp4HI	GCNGC	2 cut(s)	100, 528
FspBI	CTAG	1 cut(s)	662
GluI	GCNGC	2 cut(s)	100, 528
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	692
Hin1II	CATG	3 cut(s)	425, 449, 625
HindIII	AAGCTT	2 cut(s)	20, 460
HinfI	GANTC	3 cut(s)	280, 491, 590
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	413
Hpy188I	TCNGA	4 cut(s)	64, 76, 96, 304
Hpy188III	TCNNGA	4 cut(s)	275, 608, 622, 662
Hpy8I	GTNNAC	1 cut(s)	413
HpyAV	CCTTC	1 cut(s)	660
HpyCH4III	ACNGT	2 cut(s)	60, 683
HpyCH4V	TGCA	6 cut(s)	49, 102, 355, 364, 421, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	361, 706
HpyF3I	CTNAG	5 cut(s)	18, 93, 253, 588, 696
Hsp92II	CATG	3 cut(s)	425, 449, 625
Kzo9I	GATC	1 cut(s)	716
Lsp1109I	GCAGC	2 cut(s)	86, 539
LweI	GCATC	1 cut(s)	539
MabI	ACCWGGT	1 cut(s)	223
MaeI	CTAG	1 cut(s)	662
MaeIII	GTNAC	3 cut(s)	292, 514, 591
MalI	GATC	1 cut(s)	718
MboI	GATC	1 cut(s)	716
MboII	GAAGA	1 cut(s)	328
MfeI	CAATTG	1 cut(s)	44
MluCI	AATT	3 cut(s)	44, 243, 612
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	1 cut(s)	620
MnlI	CCTC	7 cut(s)	187, 223, 262, 306, 636, 669, 703
MseI	TTAA	1 cut(s)	125
MslI	CAYNNNNRTG	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	389
MspR9I	CCNGG	3 cut(s)	6, 225, 738
MunI	CAATTG	1 cut(s)	44
MvaI	CCWGG	3 cut(s)	6, 225, 738
MwoI	GCNNNNNNNGC	2 cut(s)	361, 706
NdeII	GATC	1 cut(s)	716
NlaIII	CATG	3 cut(s)	425, 449, 625
NlaIV	GGNNCC	2 cut(s)	198, 480
NmuCI	GTSAC	1 cut(s)	591
PagI	TCATGA	1 cut(s)	621
PceI	AGGCCT	1 cut(s)	692
PfeI	GAWTC	2 cut(s)	280, 491
PkrI	GCNGC	2 cut(s)	101, 529
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
PsiI	TTATAA	1 cut(s)	432
Psp6I	CCWGG	3 cut(s)	4, 223, 736
PspGI	CCWGG	3 cut(s)	4, 223, 736
PspN4I	GGNNCC	2 cut(s)	198, 480
PspPI	GGNCC	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	529
PstNI	CAGNNNCTG	1 cut(s)	524
PvuII	CAGCTG	1 cut(s)	389
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	2 cut(s)	100, 528
Sau3AI	GATC	1 cut(s)	716
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	3 cut(s)	6, 225, 738
SexAI	ACCWGGT	1 cut(s)	223
SfaNI	GCATC	1 cut(s)	539
SfcI	CTRYAG	2 cut(s)	525, 682
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	501
Sse9I	AATT	3 cut(s)	44, 243, 612
SseBI	AGGCCT	1 cut(s)	692
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	1 cut(s)	662
StuI	AGGCCT	1 cut(s)	692
StyD4I	CCNGG	3 cut(s)	4, 223, 736
StyI	CCWWGG	2 cut(s)	474, 558
TaaI	ACNGT	2 cut(s)	60, 683
TaqI	TCGA	1 cut(s)	192
TasI	AATT	3 cut(s)	44, 243, 612
TfiI	GAWTC	2 cut(s)	280, 491
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	591
TseI	GCWGC	2 cut(s)	99, 527
Tsp45I	GTSAC	1 cut(s)	591
TspDTI	ATGAA	5 cut(s)	201, 390, 467, 638, 719
TspRI	CASTG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	221
XbaI	TCTAGA	1 cut(s)	661
XspI	CTAG	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.