Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005808

Physical Location & Seq

Genomic Coordinates Forward (+)

6276454 .. 6279554

Gene Structure 3101 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06930.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGAGGCGACGATGACGATGACGATGACGTTGACTATGAGTCTGGCAAGTCTCAAACCCAAACCGATCCGACCCAAAAGCCCTTACCTTCCCCAAACACTGAACTCAAGTAGAATCTTCAAGTCCTTGTCTCTCCCCAACCCTTCAGTCGGAGTCGGAGCCCCGACTCTGGTGGATCAATTCGACCCGACCATCCCAATAGAGCGGGCCGTCACTCCCCCCAGCTCATGGTACACCGATCCTTCCTTTTACGCTCAAGAACTCCACTCTGTTTTTTACCGTGGATGGCAAGCTGTAGGATATACTGAACAGATAAAGAATGCTGGGGACTTCTTCACCGGCAGATTGGGGAATGTGGAGTTTGTTGTGTGTCGAGATGATAATGGCAAGCTTCAAGCTTTCCACAATGTGTGTCGCCATCACGCCTCAATTCTTGCTTACGGAAGTGGCCGAAAGTCGTGCTTCGTGTGCCCTTATCATGGGTGGACATATGGGTTAGACGGTGCACTTCGCAAGGCAACTAGGATAACAGGAATACAGAACTTCAATAAGCATGAGTTTGGGCTTACACCAGTAAAAGTAGCTACTTGGGGACCGTTTGTCCTTGCAAATATGGAGCCAGAGGTTGATAGTGATGTAGAAATCGTGGAAAGCAAATGGCTTGGGACCTCTTCAGACATACTGAGTAAAAACGGGGTTGATTCATCATTAACTTTTGTTTGTAGACGTGAATATATGATTGAATGTAACTGGAAGGTCTTTTGTGACAACTACTTAGATGGGGGATATCATGTGCCTTATGCACATAAAGATCTAGCATCTGGTCTCAACCTGAATGGTTACTCTACCACAGTATATGAAAAGGTCAGCATTCAAATGTGTGAAGGGGGTTCAACAGAGAAGAAAGATGACCATGATCGGCTTGGATCAAAAGCCCTTTATGCTTTCATTTATCCCAATTTCATGATTAATAGGTATGGACCATGGATGGACACCAATCTGGTAATCCCTCTTGGACCTAGGAAATGTCAAGTGATATTTGATTACTTTCTTGAAGCTTCTGTCAAGGATGACAGTGATTACATAGAGAGGAGCTTGAATGAGAGTGAAAAAGTACAGATGGAAGATATCGTGCTGTGTGAAGGTGTTCAAAGAGGTCTTGAATCACCCGCATACAATATTGGTAGATATGCACCAACAGTTGAAAATGCAATGTACCATTTTCACCGTCTGCTCCATGAGAGCTTAAGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 map00260

Pfam Domains

Protein Families

Rieske Ring_hydroxyl_A

Protein Analysis

419

Amino Acids

47.22

Weight (kDa)

5.97

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rieske	PF00355	96 - 182	8.9e-19	Rieske [2Fe-2S] domain
Ring_hydroxyl_A	PF00848	238 - 353	2.5e-15	Ring hydroxylating alpha subunit (catalytic domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29890
fragaria_vesca	FvH4_4g06930 FvH4_4g06930 FvH4_4g06930 FvH4_4g06930 FvH4_4g06930
malus_domestica	MD13G1241100.v1.1
prunus_persica	Prupe.1G072500_v2.0.a1 Prupe.1G072500_v2.0.a1 Prupe.1G072500_v2.0.a1 Prupe.1G072500_v2.0.a1
pyrus_communis	pycom13g21200
rosa_chinensis	RchiOBHm_Chr4g0398871
rosa_laevigata	RLG00000009310 RLG00000009315
rosa_multiflora	Rmu_ssc0000064.1_g000028
rosa_roxburghii	Rroxscaffold_5G00343910 Rroxscaffold_7G00183470
rosa_rugosa	Rorug04G0012400 Rorug04G0012800 Rorug04G0012900 Rorug04G0013000 Rorug04G0013100
rosa_samantha	Rh4AG090500 Rh4BG087800 Rh4CG098800 Rh4DG082800
rosa_wichuraiana	Rw4G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	228
AccBSI	CCGCTC	1 cut(s)	205
AccI	GTMKAC	1 cut(s)	724
AciI	CCGC	2 cut(s)	205, 1170
AclWI	GGATC	4 cut(s)	61, 183, 233, 934
AcoI	YGGCCR	1 cut(s)	448
AcuI	CTGAAG	2 cut(s)	129, 657
AdeI	CACNNNGTG	1 cut(s)	409
AfaI	GTAC	3 cut(s)	233, 1116, 1217
AfiI	CCNNNNNNNGG	4 cut(s)	149, 169, 228, 479
AflII	CTTAAG	1 cut(s)	1246
AhdI	GACNNNNNGTC	2 cut(s)	39, 599
AjiI	CACGTC	1 cut(s)	728
AluBI	AGCT	8 cut(s)	225, 293, 391, 398, 584, 1058, 1095, 1245
AluI	AGCT	8 cut(s)	225, 293, 391, 398, 584, 1058, 1095, 1245
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	3 cut(s)	56, 135, 830
Alw44I	GTGCAC	1 cut(s)	504
AlwI	GGATC	4 cut(s)	61, 183, 233, 934
AoxI	GGCC	2 cut(s)	207, 448
ApaLI	GTGCAC	1 cut(s)	504
AseI	ATTAAT	1 cut(s)	969
Asp700I	GAANNNNTTC	1 cut(s)	1146
AspA2I	CCTAGG	1 cut(s)	1019
AspS9I	GGNCC	5 cut(s)	207, 593, 666, 980, 1016
AsuHPI	GGTGA	3 cut(s)	328, 1158, 1217
AvaII	GGWCC	4 cut(s)	593, 666, 980, 1016
AvrII	CCTAGG	1 cut(s)	1019
BaeGI	GKGCMC	2 cut(s)	473, 508
BanII	GRGCYC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	508
BccI	CCATC	6 cut(s)	200, 279, 426, 773, 982, 1114
BceAI	ACGGC	1 cut(s)	194
BcgI	CGANNNNNNTGC	2 cut(s)	441, 475
BcoDI	GTCTC	3 cut(s)	56, 135, 830
BfaI	CTAG	3 cut(s)	522, 815, 1020
BfmI	CTRYAG	1 cut(s)	294
BfrI	CTTAAG	1 cut(s)	1246
BglII	AGATCT	1 cut(s)	811
BlnI	CCTAGG	1 cut(s)	1019
Bme18I	GGWCC	4 cut(s)	593, 666, 980, 1016
BmeRI	GACNNNNNGTC	2 cut(s)	39, 599
BmgBI	CACGTC	1 cut(s)	728
BmgT120I	GGNCC	5 cut(s)	207, 593, 666, 980, 1016
BmiI	GGNNCC	4 cut(s)	160, 594, 618, 667
BmsI	GCATC	1 cut(s)	827
BpuEI	CTTGAG	2 cut(s)	91, 240
BsaI	GGTCTC	1 cut(s)	830
BsaJI	CCNNGG	3 cut(s)	280, 983, 1019
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 169, 228, 479
Bse118I	RCCGGY	1 cut(s)	338
Bse1I	ACTGG	2 cut(s)	572, 755
Bse3DI	GCAATG	1 cut(s)	1218
BseDI	CCNNGG	3 cut(s)	280, 983, 1019
BseGI	GGATG	4 cut(s)	192, 290, 993, 1075
BseLI	CCNNNNNNNGG	4 cut(s)	149, 169, 228, 479
BseMI	GCAATG	1 cut(s)	1218
BseMII	CTCAG	1 cut(s)	674
BseNI	ACTGG	2 cut(s)	572, 755
BseRI	GAGGAG	1 cut(s)	1105
BseSI	GKGCMC	2 cut(s)	473, 508
BseYI	CCCAGC	2 cut(s)	221, 323
BshFI	GGCC	2 cut(s)	209, 450
BsiHKAI	GWGCWC	1 cut(s)	508
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	3 cut(s)	341, 606, 679
BslI	CCNNNNNNNGG	4 cut(s)	149, 169, 228, 479
BsmAI	GTCTC	3 cut(s)	56, 135, 830
BsmFI	GGGAC	3 cut(s)	341, 606, 679
BsmI	GAATGC	2 cut(s)	325, 870
BsnI	GGCC	2 cut(s)	209, 450
Bso31I	GGTCTC	1 cut(s)	830
Bsp1286I	GDGCHC	3 cut(s)	163, 473, 508
Bsp143I	GATC	6 cut(s)	66, 175, 238, 811, 916, 926
Bsp19I	CCATGG	1 cut(s)	983
BspACI	CCGC	2 cut(s)	205, 1170
BspANI	GGCC	2 cut(s)	209, 450
BspCNI	CTCAG	1 cut(s)	675
BspHI	TCATGA	1 cut(s)	963
BspLI	GGNNCC	4 cut(s)	160, 594, 618, 667
BspPI	GGATC	4 cut(s)	61, 183, 233, 934
BspTI	CTTAAG	1 cut(s)	1246
BspTNI	GGTCTC	1 cut(s)	830
BsrBI	CCGCTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	1218
BsrFI	RCCGGY	1 cut(s)	338
BsrI	ACTGG	2 cut(s)	572, 755
BssAI	RCCGGY	1 cut(s)	338
BssECI	CCNNGG	3 cut(s)	280, 983, 1019
BssMI	GATC	6 cut(s)	66, 175, 238, 811, 916, 926
BssT1I	CCWWGG	2 cut(s)	983, 1019
Bst4CI	ACNGT	7 cut(s)	281, 503, 597, 853, 1076, 1201, 1229
Bst6I	CTCTTC	1 cut(s)	676
BstAFI	CTTAAG	1 cut(s)	1246
BstC8I	GCNNGC	3 cut(s)	207, 291, 389
BstDEI	CTNAG	2 cut(s)	683, 775
BstDSI	CCRYGG	2 cut(s)	280, 983
BstF5I	GGATG	4 cut(s)	192, 290, 993, 1075
BstKTI	GATC	6 cut(s)	69, 178, 241, 814, 919, 929
BstMAI	GTCTC	3 cut(s)	56, 135, 830
BstMBI	GATC	6 cut(s)	66, 175, 238, 811, 916, 926
BstMWI	GCNNNNNNNGC	2 cut(s)	468, 941
BstSFI	CTRYAG	1 cut(s)	294
BstSLI	GKGCMC	2 cut(s)	473, 508
BstX2I	RGATCY	1 cut(s)	811
BstYI	RGATCY	1 cut(s)	811
BsuRI	GGCC	2 cut(s)	209, 450
BtgI	CCRYGG	2 cut(s)	280, 983
BtrI	CACGTC	1 cut(s)	728
BtsCI	GGATG	4 cut(s)	192, 290, 993, 1075
BtsIMutI	CAGTG	2 cut(s)	98, 1081
Cac8I	GCNNGC	3 cut(s)	207, 291, 389
CciI	TCATGA	1 cut(s)	963
Cfr10I	RCCGGY	1 cut(s)	338
Cfr13I	GGNCC	5 cut(s)	207, 593, 666, 980, 1016
Csp6I	GTAC	3 cut(s)	232, 1115, 1216
CviAII	CATG	8 cut(s)	228, 479, 554, 791, 914, 964, 984, 1238
CviQI	GTAC	3 cut(s)	232, 1115, 1216
DdeI	CTNAG	2 cut(s)	683, 775
DpnI	GATC	6 cut(s)	68, 177, 240, 813, 918, 928
DpnII	GATC	6 cut(s)	66, 175, 238, 811, 916, 926
DraIII	CACNNNGTG	1 cut(s)	409
DriI	GACNNNNNGTC	2 cut(s)	39, 599
EaeI	YGGCCR	1 cut(s)	448
Eam1104I	CTCTTC	1 cut(s)	676
Eam1105I	GACNNNNNGTC	2 cut(s)	39, 599
EarI	CTCTTC	1 cut(s)	676
Eco130I	CCWWGG	2 cut(s)	983, 1019
Eco24I	GRGCYC	1 cut(s)	163
Eco31I	GGTCTC	1 cut(s)	830
Eco32I	GATATC	2 cut(s)	788, 1129
Eco47I	GGWCC	4 cut(s)	593, 666, 980, 1016
Eco57I	CTGAAG	2 cut(s)	129, 657
EcoO109I	RGGNCCY	1 cut(s)	666
EcoRV	GATATC	2 cut(s)	788, 1129
EcoT14I	CCWWGG	2 cut(s)	983, 1019
EcoT38I	GRGCYC	1 cut(s)	163
ErhI	CCWWGG	2 cut(s)	983, 1019
FaeI	CATG	8 cut(s)	231, 482, 557, 794, 917, 967, 987, 1241
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	3 cut(s)	341, 606, 679
FatI	CATG	8 cut(s)	227, 478, 553, 790, 913, 963, 983, 1237
FauI	CCCGC	2 cut(s)	198, 1177
FauNDI	CATATG	1 cut(s)	490
FblI	GTMKAC	1 cut(s)	724
FokI	GGATG	4 cut(s)	179, 297, 1000, 1082
FriOI	GRGCYC	1 cut(s)	163
FspBI	CTAG	3 cut(s)	522, 815, 1020
GsaI	CCCAGC	2 cut(s)	225, 327
HaeIII	GGCC	2 cut(s)	209, 450
HapII	CCGG	1 cut(s)	339
Hin1II	CATG	8 cut(s)	231, 482, 557, 794, 917, 967, 987, 1241
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HindIII	AAGCTT	3 cut(s)	389, 396, 1056
HinfI	GANTC	6 cut(s)	40, 114, 153, 166, 701, 1163
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	3 cut(s)	328, 1158, 1217
Hpy166II	GTNNAC	5 cut(s)	33, 234, 486, 506, 725
Hpy188I	TCNGA	4 cut(s)	71, 152, 158, 676
Hpy188III	TCNNGA	5 cut(s)	257, 374, 964, 1052, 1160
Hpy8I	GTNNAC	5 cut(s)	33, 234, 486, 506, 725
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	6 cut(s)	98, 153, 252, 748, 878, 1136
HpyCH4III	ACNGT	7 cut(s)	281, 503, 597, 853, 1076, 1201, 1229
HpyCH4IV	ACGT	2 cut(s)	29, 727
HpyCH4V	TGCA	5 cut(s)	506, 608, 803, 1193, 1211
HpyF10VI	GCNNNNNNNGC	2 cut(s)	468, 941
HpyF3I	CTNAG	2 cut(s)	683, 775
HpySE526I	ACGT	2 cut(s)	29, 727
Hsp92II	CATG	8 cut(s)	231, 482, 557, 794, 917, 967, 987, 1241
Kzo9I	GATC	6 cut(s)	66, 175, 238, 811, 916, 926
LmnI	GCTCC	4 cut(s)	158, 616, 1092, 1239
LweI	GCATC	1 cut(s)	827
MaeI	CTAG	3 cut(s)	522, 815, 1020
MaeII	ACGT	2 cut(s)	29, 727
MaeIII	GTNAC	4 cut(s)	211, 746, 764, 839
MalI	GATC	6 cut(s)	68, 177, 240, 813, 918, 928
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	6 cut(s)	66, 175, 238, 811, 916, 926
MboII	GAAGA	5 cut(s)	109, 325, 663, 913, 1136
MflI	RGATCY	1 cut(s)	811
MhlI	GDGCHC	3 cut(s)	163, 473, 508
MluCI	AATT	3 cut(s)	179, 429, 958
MlyI	GAGTC	3 cut(s)	49, 160, 162
MmeI	TCCRAC	3 cut(s)	94, 130, 136
MnlI	CCTC	6 cut(s)	436, 616, 679, 1020, 1083, 1148
MroXI	GAANNNNTTC	1 cut(s)	1146
MseI	TTAA	3 cut(s)	710, 969, 1247
MslI	CAYNNNNRTG	1 cut(s)	875
MspCI	CTTAAG	1 cut(s)	1246
MspI	CCGG	1 cut(s)	339
Mva1269I	GAATGC	2 cut(s)	325, 870
MwoI	GCNNNNNNNGC	2 cut(s)	468, 941
NcoI	CCATGG	1 cut(s)	983
NdeI	CATATG	1 cut(s)	490
NdeII	GATC	6 cut(s)	66, 175, 238, 811, 916, 926
NlaIII	CATG	8 cut(s)	231, 482, 557, 794, 917, 967, 987, 1241
NlaIV	GGNNCC	4 cut(s)	160, 594, 618, 667
NmuCI	GTSAC	2 cut(s)	211, 764
PagI	TCATGA	1 cut(s)	963
PctI	GAATGC	2 cut(s)	325, 870
PdmI	GAANNNNTTC	1 cut(s)	1146
PfeI	GAWTC	3 cut(s)	114, 701, 1163
PflMI	CCANNNNNTGG	1 cut(s)	228
PleI	GAGTC	3 cut(s)	48, 160, 161
PpsI	GAGTC	3 cut(s)	48, 160, 161
PpuMI	RGGWCCY	1 cut(s)	666
PshBI	ATTAAT	1 cut(s)	969
Psp5II	RGGWCCY	1 cut(s)	666
PspFI	CCCAGC	2 cut(s)	221, 323
PspN4I	GGNNCC	4 cut(s)	160, 594, 618, 667
PspPI	GGNCC	5 cut(s)	207, 593, 666, 980, 1016
PspPPI	RGGWCCY	1 cut(s)	666
PsuI	RGATCY	1 cut(s)	811
RsaI	GTAC	3 cut(s)	233, 1116, 1217
RsaNI	GTAC	3 cut(s)	232, 1115, 1216
RseI	CAYNNNNRTG	1 cut(s)	875
SaqAI	TTAA	3 cut(s)	710, 969, 1247
Sau3AI	GATC	6 cut(s)	66, 175, 238, 811, 916, 926
Sau96I	GGNCC	5 cut(s)	207, 593, 666, 980, 1016
SchI	GAGTC	3 cut(s)	49, 160, 162
SduI	GDGCHC	3 cut(s)	163, 473, 508
SfaNI	GCATC	1 cut(s)	827
SfcI	CTRYAG	1 cut(s)	294
SinI	GGWCC	4 cut(s)	593, 666, 980, 1016
SmiMI	CAYNNNNRTG	1 cut(s)	875
SmlI	CTYRAG	3 cut(s)	106, 255, 1246
SmoI	CTYRAG	3 cut(s)	106, 255, 1246
Sse9I	AATT	3 cut(s)	179, 429, 958
SsiI	CCGC	2 cut(s)	205, 1170
SspI	AATATT	1 cut(s)	1180
SspMI	CTAG	3 cut(s)	522, 815, 1020
StyI	CCWWGG	2 cut(s)	983, 1019
TaaI	ACNGT	7 cut(s)	281, 503, 597, 853, 1076, 1201, 1229
TaiI	ACGT	2 cut(s)	32, 730
TaqI	TCGA	2 cut(s)	183, 373
TasI	AATT	3 cut(s)	179, 429, 958
TatI	WGTACW	1 cut(s)	1114
TfiI	GAWTC	3 cut(s)	114, 701, 1163
Tru1I	TTAA	3 cut(s)	710, 969, 1247
Tru9I	TTAA	3 cut(s)	710, 969, 1247
TscAI	CASTG	2 cut(s)	105, 1081
TseFI	GTSAC	2 cut(s)	211, 764
Tsp45I	GTSAC	2 cut(s)	211, 764
TspDTI	ATGAA	4 cut(s)	693, 873, 937, 952
TspGWI	ACGGA	1 cut(s)	456
TspRI	CASTG	2 cut(s)	105, 1081
Van91I	CCANNNNNTGG	1 cut(s)	228
Vha464I	CTTAAG	1 cut(s)	1246
VneI	GTGCAC	1 cut(s)	504
VpaK11BI	GGWCC	4 cut(s)	593, 666, 980, 1016
VspI	ATTAAT	1 cut(s)	969
XcmI	CCANNNNNNNNNTGG	1 cut(s)	920
XmaJI	CCTAGG	1 cut(s)	1019
XmiI	GTMKAC	1 cut(s)	724
XmnI	GAANNNNTTC	1 cut(s)	1146
XspI	CTAG	3 cut(s)	522, 815, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.