Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

1980147 .. 1987280

Gene Structure 7134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0012400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1722 bp

ATGGCGGCATCGTTATTACTTCGCCGCAGAGTTTCATCTGCCGGCGTTTCTCGCACTCTCCAAGGTCTAGCGGGTGGTATGGAGCCCTTCTGTCTACACTTAGAATTGAAGATTGGAACTTTGGTGAGTTTCTCAGATAAAACAAGGCAGTACAGCAGCTCCAGTGGCACCACGAGCTTCGATTTTCTAGATTTGACTTCTCCTCATACATGGTATCCAAAAGCTCGAAGTAAGCCTCGCAAGGTTATCTTGCACATGGGTCCCACAAATAGTGGTAAAACGCACAATGCTTTAAAGCGACTCGAATCAAATCCATCTGGCATATACTGTGGTCCTCTGAGATTGTTGGCCTGGGAGGTTGCAAAACGGTTGAATAAGGCTAAAGTGCCATGTGATTTACTTACAGGACAAGAGAGAGAGGAAGTTGATGGTGCAAAACACAAGGCTGTGACAGTTGAGATGGCTGATGTAACCGCCAACTACCATTGTGCCGTTATTGATGAAATTCAGATGCTGGGCTGTAGGAACAGAGGTTTTTCTTTCACACGCGCTCTGCTAGGAATTTCTGCTGATGAACTTCACCTTTGTGGAGATGCAGCTGCCATCCCACTTATTCAGAAAATGTTAAAAGTGACCAGTGATCAAGTTGAGGTTCAATTCTATGATAGACTTTCACCACTTGTTCCAATGAAGGTTCCTCTTGGTTCCTTTTCTAATATAAGGACAGGCGATTGCATTGTTACGTTTTCACGGCGTGAAATATACAGACTAAAGAAAAAAATTGAAAGTGATGGAAAGCATCTCTGTTCTGTTGTGTATGGTTCACTTCCACCAGAGACTCGAACAAGACAGGCAACAATGTTCAATGATGCAAGCAGTGAGTTGGATGTTCTAGTAGCAAGTGATGCCATCGGAATGGGTCTTAATCTGAACATTTCACGAATCATATTTTCAACAATGACAAAATTTGATGGTATTGAGAACCGGGAACTCTTTGTACCGGAGATCAAACAAATTGCAGGAAGAGCTGGCAGGTATGGATCAAGGTTTCCTGTTGGTGAAGTGACTTGTTTAGATGCAGCTGATCTGCCTCTTCTTCATTCATCACTAAAATCCCCATCTCCGACTCTTGAGAGGGCTGGATTATTTCCTACCTTTGATCTTATGTATATGTATTCACGTTCCCACCCAAATAGAGGCCTCTACCAGATACTGGAGCATTTTGTAGAGAATGCAACATTGTCAGACAATTATTTCATTGCTGATTGCGAAGAAATAATGAAAGTTGCTGCTCTCATTGACGAGTTGCCTCTCGGGTTGCATGATAAGTACCTTTTCTGTATAAGCCCAGTTGACTTGAGTGATGACATTTCATCCCAGGGTCTTACACAGTTTGCTCAAAATTATGCAAAAAGGGGCATTGTGCCACTTCGAGAAATATTTACACCAGGGACACTTCAGATACCAAAAACACCAGGTGCACTCAAAGAGCTTGAATCCATTCACAAGGTATTGGATCTGTATGTTTGGTTGAGTTTCCGATTAGAGGAGTCATTCCCAGACCGTGAGCTTGCATCTTCACAGAAGTCCATCTGCCACCTGTTGATCGAAGAGTTTCTTGAGAGATTTGGTTTGCAAAAGCAGAGGCCTAAGGCCAAGAGATTAGCTTCAAATACTACCTTAACTTCCCTATTGTCCCAAAAGAACAGAGCCTACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

573

Amino Acids

63.92

Weight (kDa)

8.67

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEXQc_Suv3	PF22527	68 - 221	1.1e-64	DEXQ-box helicase domain of Suv3
Helicase_C	PF00271	242 - 347	8.1e-12	Helicase conserved C-terminal domain
Suv3_C_1	PF18147	429 - 470	5.5e-10	Suv3 C-terminal domain 1
SUV3_C	PF12513	495 - 542	1.3e-15	ATP-dependent RNA helicase SUV3 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1023
AccB1I	GGYRCC	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	1213
AccI	GTMKAC	1 cut(s)	94
AccII	CGCG	1 cut(s)	549
AciI	CCGC	4 cut(s)	5, 25, 71, 474
AclWI	GGATC	2 cut(s)	1048, 1524
AcsI	RAATTY	3 cut(s)	504, 561, 965
AcuI	CTGAAG	1 cut(s)	1442
AdeI	CACNNNGTG	2 cut(s)	755, 1478
AfaI	GTAC	3 cut(s)	152, 999, 1331
AfiI	CCNNNNNNNGG	3 cut(s)	1196, 1213, 1546
AgsI	TTSAA	8 cut(s)	109, 373, 656, 785, 865, 954, 1496, 1671
AjnI	CCWGG	4 cut(s)	350, 1377, 1447, 1474
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AleI	CACNNNNGTG	1 cut(s)	585
AluBI	AGCT	9 cut(s)	159, 177, 224, 599, 1028, 1082, 1492, 1570, 1667
AluI	AGCT	9 cut(s)	159, 177, 224, 599, 1028, 1082, 1492, 1570, 1667
Alw21I	GWGCWC	1 cut(s)	1483
Alw26I	GTCTC	1 cut(s)	830
Alw44I	GTGCAC	1 cut(s)	1479
AlwI	GGATC	2 cut(s)	1048, 1524
AlwNI	CAGNNNCTG	2 cut(s)	514, 1213
Ama87I	CYCGRG	1 cut(s)	1313
AoxI	GGCC	4 cut(s)	348, 1198, 1646, 1653
ApaLI	GTGCAC	1 cut(s)	1479
ApeKI	GCWGC	5 cut(s)	156, 596, 599, 1079, 1289
ApoI	RAATTY	3 cut(s)	504, 561, 965
Asp700I	GAANNNNTTC	2 cut(s)	1500, 1614
AspLEI	GCGC	1 cut(s)	551
AspS9I	GGNCC	2 cut(s)	260, 332
AsuC2I	CCSGG	1 cut(s)	986
AsuHPI	GGTGA	4 cut(s)	136, 572, 666, 1070
AvaI	CYCGRG	1 cut(s)	1313
AvaII	GGWCC	2 cut(s)	260, 332
AxyI	CCTNAGG	1 cut(s)	1650
BaeGI	GKGCMC	1 cut(s)	1483
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	87
BauI	CACGAG	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	1483
BbvI	GCAGC	5 cut(s)	168, 586, 608, 1091, 1276
BccI	CCATC	9 cut(s)	322, 422, 454, 611, 785, 917, 965, 1126, 1598
BceAI	ACGGC	2 cut(s)	476, 767
BciT130I	CCWGG	4 cut(s)	352, 1379, 1449, 1476
BciVI	GTATCC	1 cut(s)	225
BclI	TGATCA	1 cut(s)	640
BcnI	CCSGG	1 cut(s)	986
BcoDI	GTCTC	1 cut(s)	830
BfaI	CTAG	4 cut(s)	68, 188, 557, 893
BfmI	CTRYAG	1 cut(s)	520
BfuAI	ACCTGC	1 cut(s)	1023
BfuI	GTATCC	1 cut(s)	225
BisI	GCNGC	7 cut(s)	6, 25, 157, 597, 600, 1080, 1290
BlsI	GCNGC	7 cut(s)	7, 26, 158, 598, 601, 1081, 1291
Bme1390I	CCNGG	5 cut(s)	352, 986, 1379, 1449, 1476
Bme18I	GGWCC	2 cut(s)	260, 332
BmeT110I	CYCGRG	1 cut(s)	1313
BmgT120I	GGNCC	2 cut(s)	260, 332
BmiI	GGNNCC	6 cut(s)	84, 169, 261, 262, 696, 706
BmrFI	CCNGG	5 cut(s)	352, 986, 1379, 1449, 1476
BmrI	ACTGGG	1 cut(s)	1343
BmsI	GCATC	8 cut(s)	17, 501, 583, 808, 859, 895, 1066, 1583
BmuI	ACTGGG	1 cut(s)	1343
BpmI	CTGGAG	2 cut(s)	145, 1235
BpuEI	CTTGAG	3 cut(s)	1151, 1378, 1640
BpuMI	CCSGG	1 cut(s)	986
BsaJI	CCNNGG	5 cut(s)	61, 351, 1377, 1378, 1448
BsaWI	WCCGGW	1 cut(s)	1000
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	3 cut(s)	1196, 1213, 1546
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	4 cut(s)	162, 636, 1218, 1349
Bse21I	CCTNAGG	1 cut(s)	1650
Bse3DI	GCAATG	1 cut(s)	1257
BseBI	CCWGG	4 cut(s)	352, 1379, 1449, 1476
BseDI	CCNNGG	5 cut(s)	61, 351, 1377, 1378, 1448
BseGI	GGATG	3 cut(s)	603, 892, 1373
BseLI	CCNNNNNNNGG	3 cut(s)	1196, 1213, 1546
BseMI	GCAATG	1 cut(s)	1257
BseMII	CTCAG	2 cut(s)	147, 329
BseNI	ACTGG	4 cut(s)	162, 636, 1218, 1349
BseRI	GAGGAG	2 cut(s)	192, 1562
BseSI	GKGCMC	1 cut(s)	1483
BseXI	GCAGC	5 cut(s)	168, 586, 608, 1091, 1276
BseYI	CCCAGC	1 cut(s)	514
Bsh1236I	CGCG	1 cut(s)	549
BshFI	GGCC	4 cut(s)	350, 1200, 1648, 1655
BshNI	GGYRCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	1483
BsiHKCI	CYCGRG	1 cut(s)	1313
BsiSI	CCGG	3 cut(s)	42, 985, 1001
BslFI	GGGAC	3 cut(s)	246, 1465, 1681
BslI	CCNNNNNNNGG	3 cut(s)	1196, 1213, 1546
BsmAI	GTCTC	1 cut(s)	830
BsmFI	GGGAC	3 cut(s)	246, 1465, 1681
BsmI	GAATGC	1 cut(s)	1237
BsnI	GGCC	4 cut(s)	350, 1200, 1648, 1655
BsoBI	CYCGRG	1 cut(s)	1313
Bsp1286I	GDGCHC	2 cut(s)	87, 1483
Bsp143I	GATC	7 cut(s)	640, 1005, 1040, 1084, 1159, 1516, 1605
BspACI	CCGC	4 cut(s)	5, 25, 71, 474
BspANI	GGCC	4 cut(s)	350, 1200, 1648, 1655
BspCNI	CTCAG	2 cut(s)	146, 330
BspFNI	CGCG	1 cut(s)	549
BspLI	GGNNCC	6 cut(s)	84, 169, 261, 262, 696, 706
BspMI	ACCTGC	1 cut(s)	1023
BspPI	GGATC	2 cut(s)	1048, 1524
BspQI	GCTCTTC	1 cut(s)	1018
BspT107I	GGYRCC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	1257
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	4 cut(s)	162, 636, 1218, 1349
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	5 cut(s)	61, 351, 1377, 1378, 1448
BssMI	GATC	7 cut(s)	640, 1005, 1040, 1084, 1159, 1516, 1605
BssSI	CACGAG	1 cut(s)	172
BssT1I	CCWWGG	1 cut(s)	61
Bst2BI	CACGAG	1 cut(s)	172
Bst2UI	CCWGG	4 cut(s)	352, 1379, 1449, 1476
Bst4CI	ACNGT	5 cut(s)	329, 369, 454, 1392, 1565
Bst6I	CTCTTC	3 cut(s)	1018, 1098, 1605
BstAPI	GCANNNNNTGC	1 cut(s)	905
BstC8I	GCNNGC	4 cut(s)	43, 874, 1030, 1572
BstDEI	CTNAG	4 cut(s)	100, 133, 338, 1650
BstF5I	GGATG	3 cut(s)	603, 892, 1373
BstFNI	CGCG	1 cut(s)	549
BstHHI	GCGC	1 cut(s)	551
BstKTI	GATC	7 cut(s)	643, 1008, 1043, 1087, 1162, 1519, 1608
BstMAI	GTCTC	1 cut(s)	830
BstMBI	GATC	7 cut(s)	640, 1005, 1040, 1084, 1159, 1516, 1605
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 165, 174, 905, 1025
BstNI	CCWGG	4 cut(s)	352, 1379, 1449, 1476
BstSCI	CCNGG	5 cut(s)	350, 984, 1377, 1447, 1474
BstSFI	CTRYAG	1 cut(s)	520
BstSLI	GKGCMC	1 cut(s)	1483
BstUI	CGCG	1 cut(s)	549
BstV1I	GCAGC	5 cut(s)	168, 586, 608, 1091, 1276
BstX2I	RGATCY	1 cut(s)	1516
BstXI	CCANNNNNNTGG	1 cut(s)	916
BstYI	RGATCY	1 cut(s)	1516
Bsu36I	CCTNAGG	1 cut(s)	1650
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	4 cut(s)	350, 1200, 1648, 1655
BtsCI	GGATG	3 cut(s)	603, 892, 1373
BtsI	GCAGTG	1 cut(s)	883
BtsIMutI	CAGTG	3 cut(s)	169, 643, 883
BveI	ACCTGC	1 cut(s)	1023
Cac8I	GCNNGC	4 cut(s)	43, 874, 1030, 1572
CaiI	CAGNNNCTG	2 cut(s)	514, 1213
CfoI	GCGC	1 cut(s)	551
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	260, 332
CsiI	ACCWGGT	1 cut(s)	1474
Csp6I	GTAC	3 cut(s)	151, 998, 1330
CviAII	CATG	4 cut(s)	210, 256, 390, 1322
CviQI	GTAC	3 cut(s)	151, 998, 1330
DdeI	CTNAG	4 cut(s)	100, 133, 338, 1650
DpnI	GATC	7 cut(s)	642, 1007, 1042, 1086, 1161, 1518, 1607
DpnII	GATC	7 cut(s)	640, 1005, 1040, 1084, 1159, 1516, 1605
DraI	TTTAAA	1 cut(s)	294
DraIII	CACNNNGTG	2 cut(s)	755, 1478
Eam1104I	CTCTTC	3 cut(s)	1018, 1098, 1605
EarI	CTCTTC	3 cut(s)	1018, 1098, 1605
Eco130I	CCWWGG	1 cut(s)	61
Eco147I	AGGCCT	2 cut(s)	1200, 1648
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	2 cut(s)	260, 332
Eco57I	CTGAAG	1 cut(s)	1442
Eco81I	CCTNAGG	1 cut(s)	1650
Eco88I	CYCGRG	1 cut(s)	1313
EcoO109I	RGGNCCY	1 cut(s)	260
EcoRII	CCWGG	4 cut(s)	350, 1377, 1447, 1474
EcoT14I	CCWWGG	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	4 cut(s)	213, 259, 393, 1325
FalI	AAGNNNNNCTT	4 cut(s)	233, 265, 1602, 1634
FaqI	GGGAC	3 cut(s)	246, 1465, 1681
FatI	CATG	4 cut(s)	209, 255, 389, 1321
FauI	CCCGC	1 cut(s)	64
FbaI	TGATCA	1 cut(s)	640
FblI	GTMKAC	1 cut(s)	94
Fnu4HI	GCNGC	7 cut(s)	6, 25, 157, 597, 600, 1080, 1290
FokI	GGATG	3 cut(s)	590, 899, 1360
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	7 cut(s)	6, 25, 157, 597, 600, 1080, 1290
FspBI	CTAG	4 cut(s)	68, 188, 557, 893
GlaI	GCGC	1 cut(s)	550
GluI	GCNGC	7 cut(s)	6, 25, 157, 597, 600, 1080, 1290
GsaI	CCCAGC	1 cut(s)	518
GsuI	CTGGAG	2 cut(s)	145, 1235
HaeIII	GGCC	4 cut(s)	350, 1200, 1648, 1655
HapII	CCGG	3 cut(s)	42, 985, 1001
HhaI	GCGC	1 cut(s)	551
Hin1II	CATG	4 cut(s)	213, 259, 393, 1325
Hin6I	GCGC	1 cut(s)	549
HinP1I	GCGC	1 cut(s)	549
HincII	GTYRAC	1 cut(s)	1354
HindII	GTYRAC	1 cut(s)	1354
HinfI	GANTC	7 cut(s)	300, 305, 838, 942, 1126, 1496, 1550
HpaII	CCGG	3 cut(s)	42, 985, 1001
HphI	GGTGA	4 cut(s)	136, 572, 666, 1070
Hpy166II	GTNNAC	4 cut(s)	95, 824, 1354, 1481
Hpy188III	TCNNGA	5 cut(s)	188, 939, 1130, 1433, 1619
Hpy8I	GTNNAC	4 cut(s)	95, 824, 1354, 1481
HpyAV	CCTTC	2 cut(s)	97, 685
HpyCH4III	ACNGT	5 cut(s)	329, 369, 454, 1392, 1565
HpyCH4IV	ACGT	2 cut(s)	743, 1180
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 165, 174, 905, 1025
HpyF3I	CTNAG	4 cut(s)	100, 133, 338, 1650
HpySE526I	ACGT	2 cut(s)	743, 1180
Hsp92II	CATG	4 cut(s)	213, 259, 393, 1325
HspAI	GCGC	1 cut(s)	549
KflI	GGGWCCC	1 cut(s)	260
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	7 cut(s)	640, 1005, 1040, 1084, 1159, 1516, 1605
LguI	GCTCTTC	1 cut(s)	1018
LmnI	GCTCC	3 cut(s)	82, 164, 1216
Lsp1109I	GCAGC	5 cut(s)	168, 586, 608, 1091, 1276
LweI	GCATC	8 cut(s)	17, 501, 583, 808, 859, 895, 1066, 1583
MabI	ACCWGGT	1 cut(s)	1474
MaeI	CTAG	4 cut(s)	68, 188, 557, 893
MaeII	ACGT	2 cut(s)	743, 1180
MaeIII	GTNAC	5 cut(s)	448, 469, 631, 739, 1063
MalI	GATC	7 cut(s)	642, 1007, 1042, 1086, 1161, 1518, 1607
MboI	GATC	7 cut(s)	640, 1005, 1040, 1084, 1159, 1516, 1605
MboII	GAAGA	7 cut(s)	121, 1035, 1085, 1088, 1283, 1569, 1622
MflI	RGATCY	1 cut(s)	1516
MhlI	GDGCHC	2 cut(s)	87, 1483
MluCI	AATT	9 cut(s)	104, 504, 561, 656, 780, 965, 1014, 1249, 1402
MlyI	GAGTC	4 cut(s)	294, 832, 1120, 1559
MmeI	TCCRAC	2 cut(s)	864, 1148
MroNI	GCCGGC	1 cut(s)	41
MroXI	GAANNNNTTC	2 cut(s)	1500, 1614
MseI	TTAA	4 cut(s)	293, 626, 924, 1682
MslI	CAYNNNNRTG	2 cut(s)	585, 914
MspA1I	CMGCKG	2 cut(s)	599, 1082
MspI	CCGG	3 cut(s)	42, 985, 1001
MspR9I	CCNGG	5 cut(s)	352, 986, 1379, 1449, 1476
Mva1269I	GAATGC	1 cut(s)	1237
MvaI	CCWGG	4 cut(s)	352, 1379, 1449, 1476
MvnI	CGCG	1 cut(s)	549
MwoI	GCNNNNNNNGC	5 cut(s)	51, 165, 174, 905, 1025
NaeI	GCCGGC	1 cut(s)	43
NciI	CCSGG	1 cut(s)	986
NdeII	GATC	7 cut(s)	640, 1005, 1040, 1084, 1159, 1516, 1605
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	4 cut(s)	213, 259, 393, 1325
NlaIV	GGNNCC	6 cut(s)	84, 169, 261, 262, 696, 706
NmuCI	GTSAC	3 cut(s)	448, 631, 1063
OliI	CACNNNNGTG	1 cut(s)	585
PasI	CCCWGGG	1 cut(s)	1378
PceI	AGGCCT	2 cut(s)	1200, 1648
PciSI	GCTCTTC	1 cut(s)	1018
PctI	GAATGC	1 cut(s)	1237
PdiI	GCCGGC	1 cut(s)	43
PdmI	GAANNNNTTC	2 cut(s)	1500, 1614
PfeI	GAWTC	3 cut(s)	305, 942, 1496
PflMI	CCANNNNNTGG	1 cut(s)	1213
PkrI	GCNGC	7 cut(s)	7, 26, 158, 598, 601, 1081, 1291
PleI	GAGTC	4 cut(s)	294, 832, 1120, 1558
PpsI	GAGTC	4 cut(s)	294, 832, 1120, 1558
PpuMI	RGGWCCY	1 cut(s)	260
Psp5II	RGGWCCY	1 cut(s)	260
Psp6I	CCWGG	4 cut(s)	350, 1377, 1447, 1474
PspFI	CCCAGC	1 cut(s)	514
PspGI	CCWGG	4 cut(s)	350, 1377, 1447, 1474
PspN4I	GGNNCC	6 cut(s)	84, 169, 261, 262, 696, 706
PspPI	GGNCC	2 cut(s)	260, 332
PspPPI	RGGWCCY	1 cut(s)	260
PsrI	GAACNNNNNNTAC	3 cut(s)	981, 1013, 1697
PstNI	CAGNNNCTG	2 cut(s)	514, 1213
PsuI	RGATCY	1 cut(s)	1516
PvuII	CAGCTG	2 cut(s)	599, 1082
RsaI	GTAC	3 cut(s)	152, 999, 1331
RsaNI	GTAC	3 cut(s)	151, 998, 1330
RseI	CAYNNNNRTG	2 cut(s)	585, 914
SapI	GCTCTTC	1 cut(s)	1018
SaqAI	TTAA	4 cut(s)	293, 626, 924, 1682
SatI	GCNGC	7 cut(s)	6, 25, 157, 597, 600, 1080, 1290
Sau3AI	GATC	7 cut(s)	640, 1005, 1040, 1084, 1159, 1516, 1605
Sau96I	GGNCC	2 cut(s)	260, 332
SchI	GAGTC	4 cut(s)	294, 832, 1120, 1559
ScrFI	CCNGG	5 cut(s)	352, 986, 1379, 1449, 1476
SduI	GDGCHC	2 cut(s)	87, 1483
SexAI	ACCWGGT	1 cut(s)	1474
SfaNI	GCATC	8 cut(s)	17, 501, 583, 808, 859, 895, 1066, 1583
SfcI	CTRYAG	1 cut(s)	520
SinI	GGWCC	2 cut(s)	260, 332
SmiMI	CAYNNNNRTG	2 cut(s)	585, 914
SmlI	CTYRAG	3 cut(s)	1130, 1357, 1619
SmoI	CTYRAG	3 cut(s)	1130, 1357, 1619
Sse9I	AATT	9 cut(s)	104, 504, 561, 656, 780, 965, 1014, 1249, 1402
SseBI	AGGCCT	2 cut(s)	1200, 1648
SsiI	CCGC	4 cut(s)	5, 25, 71, 474
SspI	AATATT	1 cut(s)	1440
SspMI	CTAG	4 cut(s)	68, 188, 557, 893
StuI	AGGCCT	2 cut(s)	1200, 1648
StyD4I	CCNGG	5 cut(s)	350, 984, 1377, 1447, 1474
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	5 cut(s)	329, 369, 454, 1392, 1565
TaiI	ACGT	2 cut(s)	746, 1183
TaqI	TCGA	6 cut(s)	180, 226, 303, 841, 1432, 1608
TasI	AATT	9 cut(s)	104, 504, 561, 656, 780, 965, 1014, 1249, 1402
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	2 cut(s)	8, 27
TfiI	GAWTC	3 cut(s)	305, 942, 1496
Tru1I	TTAA	4 cut(s)	293, 626, 924, 1682
Tru9I	TTAA	4 cut(s)	293, 626, 924, 1682
TscAI	CASTG	3 cut(s)	169, 643, 883
TseFI	GTSAC	3 cut(s)	448, 631, 1063
TseI	GCWGC	5 cut(s)	156, 596, 599, 1079, 1289
Tsp45I	GTSAC	3 cut(s)	448, 631, 1063
TspDTI	ATGAA	9 cut(s)	24, 516, 588, 704, 1088, 1092, 1246, 1295, 1362
TspRI	CASTG	3 cut(s)	169, 643, 883
Van91I	CCANNNNNTGG	1 cut(s)	1213
VneI	GTGCAC	1 cut(s)	1479
VpaK11BI	GGWCC	2 cut(s)	260, 332
XapI	RAATTY	3 cut(s)	504, 561, 965
XbaI	TCTAGA	1 cut(s)	187
XmiI	GTMKAC	1 cut(s)	94
XmnI	GAANNNNTTC	2 cut(s)	1500, 1614
XspI	CTAG	4 cut(s)	68, 188, 557, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.