Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

15748833 .. 15754422

Gene Structure 5590 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37101

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAGTCACTCAAGTGAGTTGCCTTATAACCCAAGCAATGATTTGGAGGCCGGTCTGAAGGAGGTTCCTGTTGAGCGCGTGAACCGTTGGGGGCAAGTGAAACTATATCTGAAACCATTGTATCGATTCCGCCACACACTAGTCCTGAAAAGGGAAGAAGAAAAGAAGCAGGCAGCACGGAAACTACGTATTAGAGCACACATCCAAGCCCTACGAGCTGTGGCTATCTTCAAACAAGTTGCAGATCAAGTGAAAGGGTCTGGTGATGATTTTCCAATTGAACCAGAAGAACTTGCTAGTATGTCTAGGAATAGTGATGTTCATGCTCTGCAGCGATATCGGGGGAAAGAAGGCTTGGCAGATTCACTGAAAACAAATTTAGACAAGGGAATTGATGGGGGTGATTTACAAAAGCGGATAGATAAATTTGGATCAAACAAAAATCCTCCAGAAATAGCAACGAGCCACTGGACATGTCTTTGGGAAGCTCTGTACGATTTTACTCGGATCGTTTTGGTGATTGCTTTTGTGGGTTCTGTTGTGATGGGTATTATGGAAGAGGTGAGCTTGGAGTCTCTAAATGCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

196

Amino Acids

22.25

Weight (kDa)

8.58

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	114 - 176	3.2e-11	Cation transporter/ATPase, N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	27
AccII	CGCG	1 cut(s)	78
AciI	CCGC	2 cut(s)	130, 415
AclWI	GGATC	2 cut(s)	439, 515
AcsI	RAATTY	2 cut(s)	376, 425
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	1 cut(s)	151
AflIII	ACRYGT	1 cut(s)	473
AgsI	TTSAA	2 cut(s)	232, 281
AhlI	ACTAGT	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AleI	CACNNNNGTG	1 cut(s)	12
AluBI	AGCT	3 cut(s)	218, 488, 567
AluI	AGCT	3 cut(s)	218, 488, 567
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	1 cut(s)	579
AlwI	GGATC	2 cut(s)	439, 515
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	2 cut(s)	173, 331
ApoI	RAATTY	2 cut(s)	376, 425
AspLEI	GCGC	1 cut(s)	78
AsuHPI	GGTGA	4 cut(s)	275, 413, 529, 574
BaeI	ACNNNNGTAYC	2 cut(s)	104, 137
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	185, 343
BccI	CCATC	2 cut(s)	389, 538
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BcoDI	GTCTC	1 cut(s)	579
BcuI	ACTAGT	1 cut(s)	139
BfaI	CTAG	3 cut(s)	140, 297, 306
BfmI	CTRYAG	1 cut(s)	329
BisI	GCNGC	2 cut(s)	174, 332
BlsI	GCNGC	2 cut(s)	175, 333
BmiI	GGNNCC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	432
Bsa29I	ATCGAT	1 cut(s)	124
BsaAI	YACGTR	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	473
Bse3DI	GCAATG	1 cut(s)	43
BseCI	ATCGAT	1 cut(s)	124
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMI	GCAATG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	473
BseXI	GCAGC	2 cut(s)	185, 343
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	50
BshVI	ATCGAT	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	579
BsnI	GGCC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	3 cut(s)	244, 431, 507
BspACI	CCGC	2 cut(s)	130, 415
BspANI	GGCC	1 cut(s)	50
BspDI	ATCGAT	1 cut(s)	124
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	66
BspMAI	CTGCAG	1 cut(s)	333
BspPI	GGATC	2 cut(s)	439, 515
BsrDI	GCAATG	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	473
BssAI	RCCGGY	1 cut(s)	50
BssMI	GATC	3 cut(s)	244, 431, 507
Bst4CI	ACNGT	1 cut(s)	86
Bst6I	CTCTTC	1 cut(s)	552
BstBAI	YACGTR	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	201
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	3 cut(s)	247, 434, 510
BstMAI	GTCTC	1 cut(s)	579
BstMBI	GATC	3 cut(s)	244, 431, 507
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	477
BstSFI	CTRYAG	1 cut(s)	329
BstSNI	TACGTA	1 cut(s)	188
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	185, 343
Bsu15I	ATCGAT	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	50
BsuTUI	ATCGAT	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	201
BtsIMutI	CAGTG	2 cut(s)	365, 466
Cac8I	GCNNGC	1 cut(s)	171
CfoI	GCGC	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	50
ClaI	ATCGAT	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	2 cut(s)	323, 474
CviJI	RGCY	8 cut(s)	50, 209, 218, 224, 354, 465, 488, 567
CviKI_1	RGCY	8 cut(s)	50, 209, 218, 224, 354, 465, 488, 567
CviQI	GTAC	1 cut(s)	493
DpnI	GATC	3 cut(s)	246, 433, 509
DpnII	GATC	3 cut(s)	244, 431, 507
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
EciI	GGCGGA	1 cut(s)	119
Eco105I	TACGTA	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	77
EcoRV	GATATC	1 cut(s)	338
FaeI	CATG	2 cut(s)	326, 477
FaiI	YATR	6 cut(s)	27, 106, 302, 324, 475, 554
FatI	CATG	2 cut(s)	322, 473
Fnu4HI	GCNGC	2 cut(s)	174, 332
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	2 cut(s)	174, 332
FspBI	CTAG	3 cut(s)	140, 297, 306
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	2 cut(s)	174, 332
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	51
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	2 cut(s)	326, 477
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HinfI	GANTC	4 cut(s)	4, 126, 362, 572
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	4 cut(s)	275, 413, 529, 574
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	3 cut(s)	57, 111, 507
Hpy188III	TCNNGA	2 cut(s)	145, 449
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	52, 344
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	242, 331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	2 cut(s)	326, 477
HspAI	GCGC	1 cut(s)	76
Kzo9I	GATC	3 cut(s)	244, 431, 507
LpnPI	CCDG	8 cut(s)	64, 81, 155, 158, 246, 297, 454, 462
Lsp1109I	GCAGC	2 cut(s)	185, 343
MaeI	CTAG	3 cut(s)	140, 297, 306
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	3 cut(s)	246, 433, 509
MboI	GATC	3 cut(s)	244, 431, 507
MboII	GAAGA	5 cut(s)	167, 170, 220, 299, 569
MfeI	CAATTG	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	4 cut(s)	276, 376, 390, 425
MlyI	GAGTC	2 cut(s)	13, 581
MnlI	CCTC	4 cut(s)	40, 55, 456, 553
MseI	TTAA	1 cut(s)	589
MslI	CAYNNNNRTG	1 cut(s)	12
MspI	CCGG	1 cut(s)	51
MunI	CAATTG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeII	GATC	3 cut(s)	244, 431, 507
NlaIII	CATG	2 cut(s)	326, 477
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	1 cut(s)	477
OliI	CACNNNNGTG	1 cut(s)	12
PciI	ACATGT	1 cut(s)	473
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	126, 362
PkrI	GCNGC	2 cut(s)	175, 333
PleI	GAGTC	2 cut(s)	12, 580
PpsI	GAGTC	2 cut(s)	12, 580
Ppu21I	YACGTR	1 cut(s)	188
PscI	ACATGT	1 cut(s)	473
PsiI	TTATAA	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	66
PstI	CTGCAG	1 cut(s)	333
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	589
SatI	GCNGC	2 cut(s)	174, 332
Sau3AI	GATC	3 cut(s)	244, 431, 507
SchI	GAGTC	2 cut(s)	13, 581
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	6 cut(s)	66, 190, 220, 490, 564, 569
SfcI	CTRYAG	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SnaBI	TACGTA	1 cut(s)	188
SpeI	ACTAGT	1 cut(s)	139
Sse9I	AATT	4 cut(s)	276, 376, 390, 425
SsiI	CCGC	2 cut(s)	130, 415
SspMI	CTAG	3 cut(s)	140, 297, 306
TaaI	ACNGT	1 cut(s)	86
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	1 cut(s)	124
TasI	AATT	4 cut(s)	276, 376, 390, 425
TfiI	GAWTC	2 cut(s)	126, 362
Tru1I	TTAA	1 cut(s)	589
Tru9I	TTAA	1 cut(s)	589
TscAI	CASTG	2 cut(s)	372, 473
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	2 cut(s)	173, 331
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	311
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	2 cut(s)	372, 473
XapI	RAATTY	2 cut(s)	376, 425
XceI	RCATGY	1 cut(s)	477
XspI	CTAG	3 cut(s)	140, 297, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.