Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

12340406 .. 12354963

Gene Structure 14558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG082300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAGCCAGAGGTTGACAGTGATGTAGAAATCGTGGAGAGCGAATGGCTTGGGAGCTCCTCAGATGTTCTGAGTACAAATGGGGTTGATACATCATTAAATTATGTTTGTAGACGTGAATATATGATTGAATGTAACTGGAAGGGTTTCAGATGGGGACGATCTATGCATGAAAAGGTTCTGAGAGTTATGCAGCAGCAACTTACAGCCAATAGTGTAGCAGTAACTATAAACTGCTTGGCGGCAGTATACTATCGTCACATTCCGCTCAATGCTGTGCAGTTTGTGTGGGTGAATGTTATCATATTTGGTCTTGGACCACTAGTATTGGTTACTGAATCTCTGGCTGATGACCTGATGAACATTTCCATTGAATTTGGAGTTCAAAAGACTGGTATAGTGGACCATCCTTTGAAATGGGTTACTGCTAACTCCGTGTTTCTGGGAATAGTGGGAATAATTCTTGTGATTCAGCTTATCATCATTGAGTTTCTTGGGAAGGCGTTTTTCATAGTCAGGCTTGACTGGAAAGAGTGGCAGTTTTCCCTCACTCTTGGTATTGTCGAGTTGTCTAGGATTCCAGCTTCAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

197

Amino Acids

22.22

Weight (kDa)

4.92

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	268
AccI	GTMKAC	2 cut(s)	112, 249
AciI	CCGC	2 cut(s)	242, 266
AcsI	RAATTY	1 cut(s)	374
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	1 cut(s)	76
AgsI	TTSAA	4 cut(s)	131, 374, 386, 415
AhlI	ACTAGT	1 cut(s)	322
AjiI	CACGTC	1 cut(s)	116
AluBI	AGCT	3 cut(s)	57, 475, 584
AluI	AGCT	3 cut(s)	57, 475, 584
Alw21I	GWGCWC	1 cut(s)	59
ApeKI	GCWGC	2 cut(s)	193, 196
ApoI	RAATTY	1 cut(s)	374
Asp700I	GAANNNNTTC	2 cut(s)	146, 177
AspS9I	GGNCC	2 cut(s)	317, 403
AsuHPI	GGTGA	1 cut(s)	304
AvaII	GGWCC	2 cut(s)	317, 403
BanII	GRGCYC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	2 cut(s)	205, 208
BccI	CCATC	2 cut(s)	147, 414
BcuI	ACTAGT	1 cut(s)	322
BfaI	CTAG	2 cut(s)	323, 573
BisI	GCNGC	3 cut(s)	194, 197, 243
BlsI	GCNGC	3 cut(s)	195, 198, 244
Bme18I	GGWCC	2 cut(s)	317, 403
BmgBI	CACGTC	1 cut(s)	116
BmgT120I	GGNCC	2 cut(s)	317, 403
BmiI	GGNNCC	1 cut(s)	6
Bse1I	ACTGG	3 cut(s)	143, 397, 530
BseGI	GGATG	1 cut(s)	406
BseMII	CTCAG	3 cut(s)	62, 75, 173
BseNI	ACTGG	3 cut(s)	143, 397, 530
BseRI	GAGGAG	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	205, 208
BsgI	GTGCAG	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	1 cut(s)	161
BspACI	CCGC	2 cut(s)	242, 266
BspCNI	CTCAG	3 cut(s)	63, 74, 174
BspLI	GGNNCC	1 cut(s)	6
BsrBI	CCGCTC	1 cut(s)	268
BsrI	ACTGG	3 cut(s)	143, 397, 530
BssMI	GATC	1 cut(s)	161
BssNAI	GTATAC	1 cut(s)	250
Bst1107I	GTATAC	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	20
BstDEI	CTNAG	3 cut(s)	61, 71, 182
BstF5I	GGATG	1 cut(s)	406
BstKTI	GATC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	205, 208
BstZ17I	GTATAC	1 cut(s)	250
BtrI	CACGTC	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	317, 403
Csp6I	GTAC	1 cut(s)	75
CspCI	CAANNNNNGTGG	2 cut(s)	309, 344
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	8 cut(s)	7, 49, 57, 209, 347, 475, 520, 584
CviKI_1	RGCY	8 cut(s)	7, 49, 57, 209, 347, 475, 520, 584
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	3 cut(s)	61, 71, 182
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
Ecl136II	GAGCTC	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	317, 403
Eco53kI	GAGCTC	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	570
EcoICRI	GAGCTC	1 cut(s)	57
EcoT22I	ATGCAT	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	59
FaeI	CATG	1 cut(s)	173
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	1 cut(s)	169
FblI	GTMKAC	2 cut(s)	112, 249
Fnu4HI	GCNGC	3 cut(s)	194, 197, 243
FokI	GGATG	1 cut(s)	393
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	3 cut(s)	194, 197, 243
FspBI	CTAG	2 cut(s)	323, 573
GluI	GCNGC	3 cut(s)	194, 197, 243
Hin1II	CATG	1 cut(s)	173
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HinfI	GANTC	3 cut(s)	338, 469, 577
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	4 cut(s)	16, 113, 250, 403
Hpy188I	TCNGA	4 cut(s)	64, 72, 152, 183
Hpy8I	GTNNAC	4 cut(s)	16, 113, 250, 403
HpyAV	CCTTC	2 cut(s)	136, 493
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	3 cut(s)	169, 193, 280
HpyF3I	CTNAG	3 cut(s)	61, 71, 182
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	1 cut(s)	173
Kzo9I	GATC	1 cut(s)	161
LmnI	GCTCC	3 cut(s)	4, 54, 62
LpnPI	CCDG	8 cut(s)	21, 124, 329, 368, 378, 428, 502, 511
Lsp1109I	GCAGC	2 cut(s)	205, 208
MaeI	CTAG	2 cut(s)	323, 573
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	5 cut(s)	134, 223, 257, 331, 421
MalI	GATC	1 cut(s)	163
MbiI	CCGCTC	1 cut(s)	268
MboI	GATC	1 cut(s)	161
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	3 cut(s)	100, 374, 459
MnlI	CCTC	3 cut(s)	4, 70, 557
Mph1103I	ATGCAT	1 cut(s)	171
MroXI	GAANNNNTTC	2 cut(s)	146, 177
MseI	TTAA	1 cut(s)	98
NdeII	GATC	1 cut(s)	161
NlaIII	CATG	1 cut(s)	173
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	257
NsiI	ATGCAT	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PdmI	GAANNNNTTC	2 cut(s)	146, 177
PfeI	GAWTC	3 cut(s)	338, 469, 577
PkrI	GCNGC	3 cut(s)	195, 198, 244
Psp124BI	GAGCTC	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	317, 403
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	3 cut(s)	194, 197, 243
Sau3AI	GATC	1 cut(s)	161
Sau96I	GGNCC	2 cut(s)	317, 403
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	7 cut(s)	15, 59, 118, 180, 357, 477, 586
SinI	GGWCC	2 cut(s)	317, 403
SpeI	ACTAGT	1 cut(s)	322
Sse9I	AATT	3 cut(s)	100, 374, 459
SsiI	CCGC	2 cut(s)	242, 266
SspMI	CTAG	2 cut(s)	323, 573
SstI	GAGCTC	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	1 cut(s)	564
TasI	AATT	3 cut(s)	100, 374, 459
TatI	WGTACW	1 cut(s)	74
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	3 cut(s)	338, 469, 577
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	2 cut(s)	193, 196
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	3 cut(s)	186, 374, 499
TspGWI	ACGGA	1 cut(s)	424
TspRI	CASTG	1 cut(s)	25
VpaK11BI	GGWCC	2 cut(s)	317, 403
XapI	RAATTY	1 cut(s)	374
XmiI	GTMKAC	2 cut(s)	112, 249
XmnI	GAANNNNTTC	2 cut(s)	146, 177
XspI	CTAG	2 cut(s)	323, 573
Zsp2I	ATGCAT	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.