Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Reverse (-)

15776207 .. 15790095

Gene Structure 13889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37102

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCCTTATGCACTGATGTAGTCTGTGACATGACTGGAATTACTTTGGCCAACGTGGATGATGTTCAAGCGGGGATCAAGGAAATACAAAGAGCTCGCATTAAGGTACGCTTTGTTACGCATGACAATCCTCAAACTGCAAAAGCAATTGCTATGGAATGTGGCATACTTGCTTCTGATAGGTCAGATGCTAGTGAGGTAATTTTTGAAGGAGAAGCGTTCCGACAACTTTCTGATAGTCAGAGAGAAGATTTAGCAGAGAAGATTTTGGTAATGCGACTGTCTACCCCCGATGACAAACTTTTGCTTGTGCAAGCACTGCGGAAAAGAGAAAAGGTTGTTGCTGTCACTGGATCTGTCATTAGTGATGCTGGTGCACTACAAGAGGCCGACATTGGTCTTGCAATAGGTGAACAAGCGACTGAAGTTGTTAAAGAGAGTTCAGATATCATAATCTTGGATGGCAATTTCGCTACTGTAGCCAAGGGTTTCAAATGGGGACGATCTATGCATGAAAAGGTTCTGAGAGTTATGCAACAGCAACTTACAGCCAATATTGTAGCAGTAACTATAAACTGCTTGGCGGCAGTTTACTATGGTCACATTCCTCTCAATGCTGTGCAGTTTGTGTGGGTGAATGTTATCATATTTGGTCTTGGACCACTAGTATTGGCTACTGAATATCCGGCTGAACGCCTGATGGACGAACCCCCTATTGACCGAGGACAACCTCTTATAAAATATATTCGGTGGAAGAGACTGTTGATACAGGTTCTGTACCAAATTATTGCCCTGCTTGTCATCAATTTTCAAGGAGGGAGTTTACTGAAAAATTATACCAGAGACCACGCCACCAAAGTGAAAAATACAATGATATTCAACACATTTGTTATATGTCAGATTTCCATTGAATTTGGAGTTCGAAAGACTGGTATACTGGACCATCCTTTGAAATGGATTACTGCTAACTCCGTGTTTCTGGGAATAGTGGGAATAATTCTTGTGATTCAGTTTATCATCATTGAGTTTCTTGGGAAGGCGTTTTTCATAGTCAGGCTTGACTGGAAAGAGTGGCAGTTTTCCCTCACCCTTGGTATTGTCGAGTTGTTTTTTGCACTGCTTCTATTCGTAAAGCACTTGACACAAAGGAATCATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

386

Amino Acids

43.27

Weight (kDa)

7.09

Isoelectric Point (pI)

25.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_C	PF00689	202 - 372	2.8e-26	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	737
AccI	GTMKAC	2 cut(s)	284, 934
AciI	CCGC	3 cut(s)	71, 322, 584
AclWI	GGATC	2 cut(s)	83, 361
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	911
AcuI	CTGAAG	1 cut(s)	444
AfaI	GTAC	2 cut(s)	108, 779
AgsI	TTSAA	7 cut(s)	68, 209, 493, 812, 880, 911, 952
AhlI	ACTAGT	1 cut(s)	664
AleI	CACNNNNGTG	1 cut(s)	857
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
Alw21I	GWGCWC	2 cut(s)	97, 379
Alw26I	GTCTC	2 cut(s)	751, 837
Alw44I	GTGCAC	1 cut(s)	375
AlwI	GGATC	2 cut(s)	83, 361
AlwNI	CAGNNNCTG	1 cut(s)	775
AoxI	GGCC	3 cut(s)	3, 48, 387
ApaLI	GTGCAC	1 cut(s)	375
ApoI	RAATTY	1 cut(s)	911
Asp700I	GAANNNNTTC	1 cut(s)	519
AspS9I	GGNCC	2 cut(s)	659, 940
AsuHPI	GGTGA	3 cut(s)	422, 646, 1078
AsuII	TTCGAA	1 cut(s)	922
AvaII	GGWCC	2 cut(s)	659, 940
BaeGI	GKGCMC	1 cut(s)	379
BalI	TGGCCA	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	97
Bbv12I	GWGCWC	2 cut(s)	97, 379
BccI	CCATC	3 cut(s)	455, 694, 951
BcoDI	GTCTC	2 cut(s)	751, 837
BcuI	ACTAGT	1 cut(s)	664
BfaI	CTAG	2 cut(s)	192, 665
BfmI	CTRYAG	1 cut(s)	477
BisI	GCNGC	1 cut(s)	585
BlsI	GCNGC	1 cut(s)	586
Bme18I	GGWCC	2 cut(s)	659, 940
BmgT120I	GGNCC	2 cut(s)	659, 940
BmsI	GCATC	2 cut(s)	178, 358
BoxI	GACNNNNGTC	1 cut(s)	396
Bpu14I	TTCGAA	1 cut(s)	922
BsaI	GGTCTC	1 cut(s)	837
BsaJI	CCNNGG	3 cut(s)	483, 721, 1090
Bse1I	ACTGG	5 cut(s)	40, 355, 934, 942, 1067
BseDI	CCNNGG	3 cut(s)	483, 721, 1090
BseGI	GGATG	3 cut(s)	64, 466, 943
BseMII	CTCAG	1 cut(s)	515
BseNI	ACTGG	5 cut(s)	40, 355, 934, 942, 1067
BseSI	GKGCMC	1 cut(s)	379
BsgI	GTGCAG	1 cut(s)	641
BshFI	GGCC	3 cut(s)	5, 50, 389
BsiHKAI	GWGCWC	2 cut(s)	97, 379
BsiSI	CCGG	1 cut(s)	686
BslFI	GGGAC	1 cut(s)	513
BsmAI	GTCTC	2 cut(s)	751, 837
BsmFI	GGGAC	1 cut(s)	513
BsnI	GGCC	3 cut(s)	5, 50, 389
Bso31I	GGTCTC	1 cut(s)	837
Bsp119I	TTCGAA	1 cut(s)	922
Bsp1286I	GDGCHC	2 cut(s)	97, 379
Bsp143I	GATC	3 cut(s)	75, 353, 503
BspACI	CCGC	3 cut(s)	71, 322, 584
BspANI	GGCC	3 cut(s)	5, 50, 389
BspCNI	CTCAG	1 cut(s)	516
BspPI	GGATC	2 cut(s)	83, 361
BspT104I	TTCGAA	1 cut(s)	922
BspTNI	GGTCTC	1 cut(s)	837
BsrI	ACTGG	5 cut(s)	40, 355, 934, 942, 1067
BssECI	CCNNGG	3 cut(s)	483, 721, 1090
BssMI	GATC	3 cut(s)	75, 353, 503
BssNAI	GTATAC	1 cut(s)	935
BssT1I	CCWWGG	2 cut(s)	483, 1090
Bst1107I	GTATAC	1 cut(s)	935
Bst4CI	ACNGT	3 cut(s)	282, 478, 762
Bst6I	CTCTTC	1 cut(s)	749
BstAPI	GCANNNNNTGC	1 cut(s)	319
BstBI	TTCGAA	1 cut(s)	922
BstC8I	GCNNGC	2 cut(s)	97, 315
BstDEI	CTNAG	1 cut(s)	524
BstF5I	GGATG	3 cut(s)	64, 466, 943
BstKTI	GATC	3 cut(s)	78, 356, 506
BstMAI	GTCTC	2 cut(s)	751, 837
BstMBI	GATC	3 cut(s)	75, 353, 503
BstMWI	GCNNNNNNNGC	2 cut(s)	319, 479
BstPAI	GACNNNNGTC	1 cut(s)	396
BstSFI	CTRYAG	1 cut(s)	477
BstSLI	GKGCMC	1 cut(s)	379
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BstZ17I	GTATAC	1 cut(s)	935
BsuRI	GGCC	3 cut(s)	5, 50, 389
BtsCI	GGATG	3 cut(s)	64, 466, 943
BtsI	GCAGTG	2 cut(s)	317, 1115
BtsIMutI	CAGTG	4 cut(s)	12, 317, 348, 1115
Cac8I	GCNNGC	2 cut(s)	97, 315
CaiI	CAGNNNCTG	1 cut(s)	775
Cfr13I	GGNCC	2 cut(s)	659, 940
Csp6I	GTAC	2 cut(s)	107, 778
CspCI	CAANNNNNGTGG	2 cut(s)	651, 686
CviAII	CATG	3 cut(s)	31, 122, 512
CviJI	RGCY	9 cut(s)	5, 50, 95, 389, 482, 551, 674, 689, 1057
CviKI_1	RGCY	9 cut(s)	5, 50, 95, 389, 482, 551, 674, 689, 1057
CviQI	GTAC	2 cut(s)	107, 778
DdeI	CTNAG	1 cut(s)	524
DpnI	GATC	3 cut(s)	77, 355, 505
DpnII	GATC	3 cut(s)	75, 353, 503
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	749
EarI	CTCTTC	1 cut(s)	749
Ecl136II	GAGCTC	1 cut(s)	95
Eco130I	CCWWGG	2 cut(s)	483, 1090
Eco24I	GRGCYC	1 cut(s)	97
Eco31I	GGTCTC	1 cut(s)	837
Eco32I	GATATC	1 cut(s)	448
Eco47I	GGWCC	2 cut(s)	659, 940
Eco53kI	GAGCTC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	444
EcoICRI	GAGCTC	1 cut(s)	95
EcoRV	GATATC	1 cut(s)	448
EcoT14I	CCWWGG	2 cut(s)	483, 1090
EcoT22I	ATGCAT	1 cut(s)	513
EcoT38I	GRGCYC	1 cut(s)	97
ErhI	CCWWGG	2 cut(s)	483, 1090
FaeI	CATG	3 cut(s)	34, 125, 515
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FaqI	GGGAC	1 cut(s)	513
FatI	CATG	3 cut(s)	30, 121, 511
FauI	CCCGC	1 cut(s)	64
FblI	GTMKAC	2 cut(s)	284, 934
Fnu4HI	GCNGC	1 cut(s)	585
FokI	GGATG	3 cut(s)	71, 473, 930
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	585
FspBI	CTAG	2 cut(s)	192, 665
GluI	GCNGC	1 cut(s)	585
HaeIII	GGCC	3 cut(s)	5, 50, 389
HapII	CCGG	1 cut(s)	686
Hin1II	CATG	3 cut(s)	34, 125, 515
HinfI	GANTC	2 cut(s)	1006, 1150
HpaII	CCGG	1 cut(s)	686
HphI	GGTGA	3 cut(s)	422, 646, 1078
Hpy166II	GTNNAC	6 cut(s)	285, 377, 413, 592, 824, 935
Hpy188I	TCNGA	8 cut(s)	178, 187, 224, 235, 243, 445, 525, 900
Hpy8I	GTNNAC	6 cut(s)	285, 377, 413, 592, 824, 935
HpyAV	CCTTC	2 cut(s)	203, 1030
HpyCH4III	ACNGT	3 cut(s)	282, 478, 762
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	9 cut(s)	12, 140, 313, 377, 404, 511, 535, 622, 1115
HpyF10VI	GCNNNNNNNGC	2 cut(s)	319, 479
HpyF3I	CTNAG	1 cut(s)	524
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	34, 125, 515
Kzo9I	GATC	3 cut(s)	75, 353, 503
LweI	GCATC	2 cut(s)	178, 358
MaeI	CTAG	2 cut(s)	192, 665
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	5 cut(s)	26, 115, 346, 565, 599
MalI	GATC	3 cut(s)	77, 355, 505
MboI	GATC	3 cut(s)	75, 353, 503
MboII	GAAGA	3 cut(s)	260, 274, 766
MfeI	CAATTG	1 cut(s)	147
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	2 cut(s)	97, 379
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	9 cut(s)	39, 147, 201, 466, 783, 805, 832, 911, 996
MluNI	TGGCCA	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	8 cut(s)	141, 190, 379, 618, 716, 741, 809, 1094
Mox20I	TGGCCA	1 cut(s)	50
Mph1103I	ATGCAT	1 cut(s)	513
MroXI	GAANNNNTTC	1 cut(s)	519
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	3 cut(s)	102, 432, 1159
MslI	CAYNNNNRTG	1 cut(s)	857
Msp20I	TGGCCA	1 cut(s)	50
MspI	CCGG	1 cut(s)	686
MunI	CAATTG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	319, 479
NdeII	GATC	3 cut(s)	75, 353, 503
NlaIII	CATG	3 cut(s)	34, 125, 515
NmuCI	GTSAC	3 cut(s)	26, 346, 599
NsiI	ATGCAT	1 cut(s)	513
NspV	TTCGAA	1 cut(s)	922
OliI	CACNNNNGTG	1 cut(s)	857
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	2 cut(s)	1006, 1150
PkrI	GCNGC	1 cut(s)	586
PshAI	GACNNNNGTC	1 cut(s)	396
PsiI	TTATAA	1 cut(s)	737
Psp124BI	GAGCTC	1 cut(s)	97
PspPI	GGNCC	2 cut(s)	659, 940
PstNI	CAGNNNCTG	1 cut(s)	775
PsuI	RGATCY	1 cut(s)	353
RsaI	GTAC	2 cut(s)	108, 779
RsaNI	GTAC	2 cut(s)	107, 778
RseI	CAYNNNNRTG	1 cut(s)	857
SacI	GAGCTC	1 cut(s)	97
SaqAI	TTAA	3 cut(s)	102, 432, 1159
SatI	GCNGC	1 cut(s)	585
Sau3AI	GATC	3 cut(s)	75, 353, 503
Sau96I	GGNCC	2 cut(s)	659, 940
SduI	GDGCHC	2 cut(s)	97, 379
SfaNI	GCATC	2 cut(s)	178, 358
SfcI	CTRYAG	1 cut(s)	477
SfuI	TTCGAA	1 cut(s)	922
SinI	GGWCC	2 cut(s)	659, 940
SmiMI	CAYNNNNRTG	1 cut(s)	857
SpeI	ACTAGT	1 cut(s)	664
Sse9I	AATT	9 cut(s)	39, 147, 201, 466, 783, 805, 832, 911, 996
SsiI	CCGC	3 cut(s)	71, 322, 584
SspI	AATATT	1 cut(s)	556
SspMI	CTAG	2 cut(s)	192, 665
SstI	GAGCTC	1 cut(s)	97
StyI	CCWWGG	2 cut(s)	483, 1090
TaaI	ACNGT	3 cut(s)	282, 478, 762
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	2 cut(s)	922, 1101
TaqII	GACCGA	1 cut(s)	735
TasI	AATT	9 cut(s)	39, 147, 201, 466, 783, 805, 832, 911, 996
TauI	GCSGC	1 cut(s)	587
TfiI	GAWTC	2 cut(s)	1006, 1150
Tru1I	TTAA	3 cut(s)	102, 432, 1159
Tru9I	TTAA	3 cut(s)	102, 432, 1159
TscAI	CASTG	4 cut(s)	19, 324, 355, 1122
TseFI	GTSAC	3 cut(s)	26, 346, 599
Tsp45I	GTSAC	3 cut(s)	26, 346, 599
TspDTI	ATGAA	2 cut(s)	528, 1036
TspGWI	ACGGA	1 cut(s)	961
TspRI	CASTG	4 cut(s)	19, 324, 355, 1122
VneI	GTGCAC	1 cut(s)	375
VpaK11BI	GGWCC	2 cut(s)	659, 940
XapI	RAATTY	1 cut(s)	911
XmiI	GTMKAC	2 cut(s)	284, 934
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	2 cut(s)	192, 665
Zsp2I	ATGCAT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.