Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

6471131 .. 6474569

Gene Structure 3439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g06520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGAGAAGTACTTGAAGAACTTCGAGGTGGAGAACAAGAATCCGTCGGAGGAGGCTATAAGGAGATGGAGAAACGCCGTCGCGCTCGTCAAAAACCCTCGCAGAAGGTTCCGATTCGTCGCCGATCTCGCCAAGCGATCTGAGGCCGAGAAGAAGAAGCTTCAAATCCAGGAAAAGATTCGAGTTGCTCTTTATGTTCAAAAAGCAGCACTGCAGTTCATTGATGCTATTGATCGTGGAGCTGATGCAAAGCCAGGTCTGCATGAATTCAAGCTGTCAGAAGATGCCAGAATGGCAGGTTTCAGCATTCACCCAGATGAACTTGCATCTATTACACGTGCCCATGATATTAAGGCCTTGAAAAGCCATGGTGGAATTCATGGGATTTTAAGGAAAGTCTCTGCCTCGGTAGATGAAGGTGTCAAAGATGGTAATATAGCAATCAGACAAAATGTTTATGGCTTAAACCGTTACAAGGAGAAACCTCCTCGAATTTTTTTGGTGTTTGTATGGGAAGCACTACAGGACTTAACATTAATGATCCTTATGGTCTGTGCTGTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009624 GO:0009628 GO:0009705 GO:0010035 GO:0010941 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055081 GO:0055085 GO:0060548 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098542 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

189

Amino Acids

21.46

Weight (kDa)

9.76

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	6 - 48	7e-21	Ca2+-ATPase N terminal autoinhibitory domain
Cation_ATPase_N	PF00690	122 - 188	8.5e-12	Cation transporter/ATPase, N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	287
AccII	CGCG	1 cut(s)	83
AclWI	GGATC	1 cut(s)	535
AcsI	RAATTY	3 cut(s)	266, 375, 492
AcvI	CACGTG	1 cut(s)	338
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	475
AflIII	ACRYGT	1 cut(s)	335
AgsI	TTSAA	5 cut(s)	16, 164, 200, 271, 361
AjnI	CCWGG	2 cut(s)	168, 253
AluBI	AGCT	3 cut(s)	160, 242, 274
AluI	AGCT	3 cut(s)	160, 242, 274
Alw26I	GTCTC	1 cut(s)	403
AlwI	GGATC	1 cut(s)	535
AoxI	GGCC	2 cut(s)	144, 354
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	3 cut(s)	266, 375, 492
AseI	ATTAAT	1 cut(s)	536
Asp700I	GAANNNNTTC	2 cut(s)	20, 177
AspLEI	GCGC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	343
BbrPI	CACGTG	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	218
BccI	CCATC	2 cut(s)	60, 422
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	2 cut(s)	170, 255
BcoDI	GTCTC	1 cut(s)	403
BfmI	CTRYAG	2 cut(s)	212, 521
BfuAI	ACCTGC	1 cut(s)	287
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
BmcAI	AGTACT	1 cut(s)	11
Bme1390I	CCNGG	2 cut(s)	170, 255
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	2 cut(s)	170, 255
BmsI	GCATC	4 cut(s)	214, 235, 274, 335
BsaAI	YACGTR	1 cut(s)	338
BsaJI	CCNNGG	2 cut(s)	367, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
BseBI	CCWGG	2 cut(s)	170, 255
BseDI	CCNNGG	2 cut(s)	367, 405
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMII	CTCAG	1 cut(s)	132
BseRI	GAGGAG	2 cut(s)	65, 477
BseSI	GKGCMC	1 cut(s)	343
BseXI	GCAGC	1 cut(s)	218
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	2 cut(s)	146, 356
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	1 cut(s)	403
BsmI	GAATGC	1 cut(s)	306
BsnI	GGCC	2 cut(s)	146, 356
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp143I	GATC	4 cut(s)	124, 137, 232, 540
Bsp19I	CCATGG	1 cut(s)	367
BspANI	GGCC	2 cut(s)	146, 356
BspCNI	CTCAG	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	110
BspMAI	CTGCAG	1 cut(s)	216
BspMI	ACCTGC	1 cut(s)	287
BspPI	GGATC	1 cut(s)	535
BssECI	CCNNGG	2 cut(s)	367, 405
BssMI	GATC	4 cut(s)	124, 137, 232, 540
BssT1I	CCWWGG	1 cut(s)	367
Bst2UI	CCWGG	2 cut(s)	170, 255
Bst4CI	ACNGT	1 cut(s)	470
BstBAI	YACGTR	1 cut(s)	338
BstDEI	CTNAG	1 cut(s)	141
BstDSI	CCRYGG	1 cut(s)	367
BstFNI	CGCG	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	4 cut(s)	127, 140, 235, 543
BstMAI	GTCTC	1 cut(s)	403
BstMBI	GATC	4 cut(s)	124, 137, 232, 540
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 259, 293
BstNI	CCWGG	2 cut(s)	170, 255
BstSCI	CCNGG	2 cut(s)	168, 253
BstSFI	CTRYAG	2 cut(s)	212, 521
BstSLI	GKGCMC	1 cut(s)	343
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	146, 356
BtgI	CCRYGG	1 cut(s)	367
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	1 cut(s)	209
BveI	ACCTGC	1 cut(s)	287
CfoI	GCGC	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	4 cut(s)	263, 344, 368, 380
CviJI	RGCY	9 cut(s)	56, 146, 160, 242, 253, 274, 356, 366, 462
CviKI_1	RGCY	9 cut(s)	56, 146, 160, 242, 253, 274, 356, 366, 462
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	4 cut(s)	126, 139, 234, 542
DpnII	GATC	4 cut(s)	124, 137, 232, 540
Eco130I	CCWWGG	1 cut(s)	367
Eco147I	AGGCCT	1 cut(s)	356
Eco72I	CACGTG	1 cut(s)	338
EcoRI	GAATTC	2 cut(s)	266, 375
EcoRII	CCWGG	2 cut(s)	168, 253
EcoT14I	CCWWGG	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	4 cut(s)	266, 347, 371, 383
FatI	CATG	4 cut(s)	262, 343, 367, 379
Fnu4HI	GCNGC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	207
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	146, 356
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	4 cut(s)	266, 347, 371, 383
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	3 cut(s)	40, 114, 178
HphI	GGTGA	1 cut(s)	302
Hpy188I	TCNGA	5 cut(s)	49, 113, 142, 280, 446
Hpy99I	CGWCG	3 cut(s)	49, 83, 122
HpyAV	CCTTC	2 cut(s)	99, 410
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	4 cut(s)	214, 248, 262, 326
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 259, 293
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	4 cut(s)	266, 347, 371, 383
HspAI	GCGC	1 cut(s)	83
Kzo9I	GATC	4 cut(s)	124, 137, 232, 540
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	8 cut(s)	155, 182, 240, 267, 282, 301, 327, 509
Lsp1109I	GCAGC	1 cut(s)	218
LweI	GCATC	4 cut(s)	214, 235, 274, 335
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	4 cut(s)	126, 139, 234, 542
MboI	GATC	4 cut(s)	124, 137, 232, 540
MboII	GAAGA	4 cut(s)	28, 163, 166, 293
MhlI	GDGCHC	1 cut(s)	343
MluCI	AATT	3 cut(s)	266, 375, 492
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	8 cut(s)	19, 43, 46, 108, 136, 415, 495, 498
MroXI	GAANNNNTTC	2 cut(s)	20, 177
MseI	TTAA	5 cut(s)	351, 389, 464, 530, 536
MslI	CAYNNNNRTG	1 cut(s)	315
MspR9I	CCNGG	2 cut(s)	170, 255
Mva1269I	GAATGC	1 cut(s)	306
MvaI	CCWGG	2 cut(s)	170, 255
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	3 cut(s)	128, 259, 293
NcoI	CCATGG	1 cut(s)	367
NdeII	GATC	4 cut(s)	124, 137, 232, 540
NlaIII	CATG	4 cut(s)	266, 347, 371, 383
NlaIV	GGNNCC	1 cut(s)	110
NmeAIII	GCCGAG	1 cut(s)	172
PceI	AGGCCT	1 cut(s)	356
PctI	GAATGC	1 cut(s)	306
PdmI	GAANNNNTTC	2 cut(s)	20, 177
PfeI	GAWTC	3 cut(s)	40, 114, 178
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	208
PmaCI	CACGTG	1 cut(s)	338
PmlI	CACGTG	1 cut(s)	338
Ppu21I	YACGTR	1 cut(s)	338
PshBI	ATTAAT	1 cut(s)	536
Psp6I	CCWGG	2 cut(s)	168, 253
PspCI	CACGTG	1 cut(s)	338
PspGI	CCWGG	2 cut(s)	168, 253
PspN4I	GGNNCC	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	216
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	315
SaqAI	TTAA	5 cut(s)	351, 389, 464, 530, 536
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	4 cut(s)	124, 137, 232, 540
ScaI	AGTACT	1 cut(s)	11
ScrFI	CCNGG	2 cut(s)	170, 255
SduI	GDGCHC	1 cut(s)	343
SfaNI	GCATC	4 cut(s)	214, 235, 274, 335
SfcI	CTRYAG	2 cut(s)	212, 521
SmiMI	CAYNNNNRTG	1 cut(s)	315
Sse9I	AATT	3 cut(s)	266, 375, 492
SseBI	AGGCCT	1 cut(s)	356
StuI	AGGCCT	1 cut(s)	356
StyD4I	CCNGG	2 cut(s)	168, 253
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	1 cut(s)	470
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	3 cut(s)	24, 181, 490
TasI	AATT	3 cut(s)	266, 375, 492
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	3 cut(s)	40, 114, 178
Tru1I	TTAA	5 cut(s)	351, 389, 464, 530, 536
Tru9I	TTAA	5 cut(s)	351, 389, 464, 530, 536
TscAI	CASTG	1 cut(s)	216
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	5 cut(s)	208, 279, 333, 368, 429
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	216
VspI	ATTAAT	1 cut(s)	536
XapI	RAATTY	3 cut(s)	266, 375, 492
XmnI	GAANNNNTTC	2 cut(s)	20, 177
ZrmI	AGTACT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.