Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

15882641 .. 15901946

Gene Structure 19306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G007480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3048 bp

ATGAGTCATTCAAGTGGATGGCCTTATAAGCCATGCAATGACGTGGAGACCGGTCTGAAGAAGGTTGATGTTGAGCGCATGAACCGTTATTGGGTGCAAGCGAAACTATATCTGAAAGCATCATATCGATTCCGCCACACACTAGTCCTGAAAAGGGCAGAAGAAAAGAAGCAGGCAGCACGGAAACTACTTAGAGCACATACCCAAGCCCTACGAGCTGCGGCTATCTTCAAACAAGTTGCAGATCAAGTGAAAGGGCCTGGTGATGATTTTCCTATTGAACCAGAGACACTTGCTAGTTTGACGAGGAATAGTGATGTTGATGCTCTGCAGCAATATGGGGGGAAAGAAGGCTTGGCAGATTTACTGAAAACAAATTTAGTGAAGGGAATTGATGGGGATGATGTACTAGAGCGGATAAATAAATTTGGATCAAACAAAAGTCCTCCAAAAACAGCAACGAGCCACTGGACATGTCTTTGGGAAGCTCTGTACGATTTTACTCGGATCGTTTTGGTGATTGCTTTTGTGGGTTCTGTTGTGATGGGTATTATGGAAGAGACTAAAAAGCTGGGATGGCACGATGTATTCAGCGTTGCTATTGCAGCTGCCATGTTCATATTTATCACAGTCTTATCTAACTATACTCAAGCTCGTCTCCAGCATATGATTGTCAGGGAGAAAATGACATACAGAGAATTGAAGGTTATTAGAGCTGGTCGACAAGTTCCAATTTCTATTTGTGATATTGTTGTGGGTGATGTTATATTCCTTGAGTTTGGTGATGAGGTCCCTGCCGATGGCATTTTAATCCATGGTTGCTTACTTGCAATTGATAAGTCCAGAGTCACTGGAGAGAGCATGATTTTTCCCGAGGATTCAAGGAAACCATTTCTACAGTCTGGATGGAAAGTAGCACATGGCAGTGCTACAATGCTGGTAACTGGGGTAGGGAAATTTACTGAATTGGGAATTCTCAGGGCTAGCACCGGTTCAAAAGACACGAAGAATAAAACCCACTTGCAGGTGCTTTTAAAGGAGGTTGCTACCTTCATGGGTGCTGTTGGATTCATGGTTGCTGCCATTGTTGCATATGTTGTTTGGTTCAGAGACTTCTTCACTGGTGATAGTTCAAATGGAAGTCCTGAACCTGGAAGTACACTTGAAGAAGTCATTCGAATTAGTATTATTGCAGTCACCATATTTGTCGTTGCATTACCTGAAGTGCTTCCTTTAGCTTTCAACATAAGCCGTCTCAGCTTAATGAAAAAGATGAAGGCAGACAATGCCTCAGTGCAGAGGCCAGCTGTATGTGAAACCATGGCCTTATGCAATGATGCACTCTGTGACAAGACTGGAATTACTTTGGACAAGATGACCGTTTTTGAGGCCTATGCTGGTCAGAAGAAAATCAATTTTGCTCAGAGTACGTGCAACTTGTCTCCAATACTGTCATCCTTACTTGCTGAAGGAATTGCTCAGAATCCATCTGTGGTTGGGAGTGGTGATGTTCAGGATTCTCGATCACCAATTGAAAGGGCCATTCTGCATTGGGGACTCAAGCTGGGAATGAATATTGATGAGATAAGGTCTCGGGGTTCAGTTATGCAAGTTTTGCCATTCAATTCAGAAAGAAAACGAGGCGGTGTTGCACTTAATCTGCCAAATGGTCGAGTTCATATACACTGGAAAGGGGCAGCTGAAAGAGTCTTGGCCTCATGTACAAGATACATTGGGGATAATGATCAGTTTTTACCAATGGATGATGATAAGTTGACATTTTTTGACAAAGCTATCAAGGATATGGCTTCTGGAGGTTTGCATTGCGTTGCCATTGCATATAGATCACTTGAATTGGACAATGTTCTAAGCCATAATAATGGACAACTAGCTCAGTGGGAATTACCTGAGGACGACCTCATTTTACTAGCTATTGTTGGTATTAAGGATGATGTTCAAGTGGAGATCAAGGAATCAGTGAAAATATCACAAAGAGCTGGCATTAAGGTACGCCTTATTACGCATGACAATCCTCAAACTGCAAAAGCAATTGCTAAGGAATGTGGCATACTTGCTTCTGATGCGTCAGAGGACAATCTTATTGAAGGAAAAGAGTTCCGAGAACTTTCTGATATTGGAAGAGAAGAATCAGCAGAGAAGATTTCGGTAATGCCACGGTCTACCCCCAATGACAAACTTTTGTTTGTGCAAGCACTGCAGAAAAGAGGGAAGGTTGTTGCTGTCACTGGATATGTCAGTAATGATGCTCAGGCACTACATGAGGCCGACATTGGTCTTGCTATGGGTAAAGAAGCGGCTGAAGTTGTTAAAGAGAGTTCAGATATCATAGTCTTGGATGGCAATTTTGCTACTGTAGCCAAGGGTTTCAGATGGGGGCGATCTATGCATGAAAAGGTTCTGAGAGTTATGCAGCAGCAACTTACAGCCAATATTGTAGCAGTAACTATAAACTGCTTGGCGGCAGTTTACTATCGTGACATTCCGCTCAATGCTGTGCAGTTTGTGTGGGTGAATGTTATCATATTTGGTCTTGGACCACTAGTATTGGCTACTGAATCTCCCGCTGATCACCTGATGAACGTACCCCCTATTGACCGAGGACAACCTCTTATAAAATATATTCGACTGTTGATACAGGTTCTGTACCAAATTATTGCCCTGCTTGTCATCAATTTTCAAGGAGGGAGTTTACTGAAAAATTATACCAGAGACCATGCCACCAAAGTGAAAAATACAATGATATTCAACACATTTGTTATATGTCAGATTTCCATTGAATTTGGAGTTCGAAAGGCTGGTATAGTGGCCCATCCTTTGAAATGGATTACTGCTAACTCCGTGTTTCTGGTAATAGTGGGAATAATTCTTGTGATTCAGTTTATCATCATAGAGTTTCTTGGGAAGGCGTTTTTCATAGTCAGGCTTGACTGGAATGAGTGGCAGTTTTCCCTCACTCTTGGTATTGTCGAGTTGTTTTTTGCACTGCTTTTATTCGTGAAGCACTTGACACAAAGGAATCATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1015

Amino Acids

112.48

Weight (kDa)

8.45

Isoelectric Point (pI)

30.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	113 - 176	3.4e-11	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	229 - 325	1.1e-14	P-type ATPase actuator domain
Cation_ATPase	PF13246	486 - 653	1.5e-27	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	641 - 763	3e-06	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	834 - 1001	4.5e-22	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	27, 2633
AarI	CACCTGC	1 cut(s)	1015
Acc36I	ACCTGC	1 cut(s)	1015
AccBSI	CCGCTC	2 cut(s)	415, 2506
AccI	GTMKAC	2 cut(s)	721, 2180
AciI	CCGC	8 cut(s)	133, 221, 415, 1644, 2315, 2480, 2504, 2583
AclWI	GGATC	2 cut(s)	439, 515
AcsI	RAATTY	5 cut(s)	376, 425, 956, 972, 2798
AcuI	CTGAAG	4 cut(s)	77, 1242, 1488, 2340
AdeI	CACNNNGTG	1 cut(s)	1346
AfaI	GTAC	8 cut(s)	408, 494, 1159, 1429, 1723, 2010, 2604, 2666
AfiI	CCNNNNNNNGG	5 cut(s)	91, 154, 800, 1024, 1151
AflIII	ACRYGT	1 cut(s)	473
AgeI	ACCGGT	2 cut(s)	50, 989
AhlI	ACTAGT	2 cut(s)	142, 2560
AjiI	CACGTC	1 cut(s)	43
AjnI	CCWGG	2 cut(s)	259, 1150
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AleI	CACNNNNGTG	1 cut(s)	2744
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	9 cut(s)	41, 281, 554, 662, 1104, 1259, 1446, 1596, 2724
AlwI	GGATC	2 cut(s)	439, 515
AlwNI	CAGNNNCTG	1 cut(s)	2662
Ama87I	CYCGRG	2 cut(s)	872, 1593
AoxI	GGCC	9 cut(s)	20, 257, 1301, 1323, 1389, 1539, 1713, 2283, 2826
ApeKI	GCWGC	9 cut(s)	176, 218, 331, 605, 608, 1079, 1697, 2431, 2434
ApoI	RAATTY	5 cut(s)	376, 425, 956, 972, 2798
AsiGI	ACCGGT	2 cut(s)	50, 989
Asp700I	GAANNNNTTC	3 cut(s)	1173, 1227, 2415
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	5 cut(s)	257, 790, 1539, 2555, 2827
AsuII	TTCGAA	2 cut(s)	1177, 2809
AsuNHI	GCTAGC	1 cut(s)	983
AvaI	CYCGRG	2 cut(s)	872, 1593
AvaII	GGWCC	2 cut(s)	790, 2555
AxyI	CCTNAGG	1 cut(s)	1908
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	9 cut(s)	188, 205, 343, 595, 617, 1066, 1709, 2443, 2446
BceAI	ACGGC	1 cut(s)	1236
BciT130I	CCWGG	2 cut(s)	261, 1152
BclI	TGATCA	2 cut(s)	1744, 2587
BcoDI	GTCTC	9 cut(s)	41, 281, 554, 662, 1104, 1259, 1446, 1596, 2724
BcuI	ACTAGT	2 cut(s)	142, 2560
BfaI	CTAG	7 cut(s)	143, 297, 410, 984, 1889, 1928, 2561
BfmI	CTRYAG	4 cut(s)	329, 896, 2216, 2373
BfuAI	ACCTGC	1 cut(s)	1015
Bme1390I	CCNGG	2 cut(s)	261, 1152
Bme18I	GGWCC	2 cut(s)	790, 2555
BmeT110I	CYCGRG	2 cut(s)	872, 1593
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	5 cut(s)	257, 790, 1539, 2555, 2827
BmiI	GGNNCC	1 cut(s)	792
BmrFI	CCNGG	2 cut(s)	261, 1152
BmrI	ACTGGG	1 cut(s)	954
BmsI	GCATC	5 cut(s)	128, 313, 1327, 2071, 2254
BmtI	GCTAGC	1 cut(s)	987
BmuI	ACTGGG	1 cut(s)	954
BoxI	GACNNNNGTC	1 cut(s)	2292
BpmI	CTGGAG	3 cut(s)	644, 873, 1833
Bpu10I	CCTNAGC	2 cut(s)	2055, 2268
Bpu14I	TTCGAA	2 cut(s)	1177, 2809
BpuEI	CTTGAG	3 cut(s)	633, 794, 1544
Bsa29I	ATCGAT	1 cut(s)	127
BsaAI	YACGTR	1 cut(s)	1431
BsaBI	GATNNNNATC	1 cut(s)	1743
BsaI	GGTCTC	3 cut(s)	41, 1596, 2724
BsaJI	CCNNGG	6 cut(s)	814, 873, 1320, 2174, 2379, 2617
BsaWI	WCCGGW	2 cut(s)	50, 989
BsaXI	ACNNNNNCTCC	2 cut(s)	2563, 2593
Bsc4I	CCNNNNNNNGG	5 cut(s)	91, 154, 800, 1024, 1151
Bse118I	RCCGGY	2 cut(s)	50, 989
Bse1I	ACTGG	8 cut(s)	473, 856, 949, 1126, 1360, 1691, 2251, 2954
Bse21I	CCTNAGG	1 cut(s)	1908
Bse3DI	GCAATG	4 cut(s)	43, 1339, 1822, 1833
Bse8I	GATNNNNATC	1 cut(s)	1743
BseBI	CCWGG	2 cut(s)	261, 1152
BseCI	ATCGAT	1 cut(s)	127
BseDI	CCNNGG	6 cut(s)	814, 873, 1320, 2174, 2379, 2617
BseGI	GGATG	9 cut(s)	23, 406, 581, 911, 1454, 1768, 1954, 2362, 2830
BseJI	GATNNNNATC	1 cut(s)	1743
BseLI	CCNNNNNNNGG	5 cut(s)	91, 154, 800, 1024, 1151
BseMI	GCAATG	4 cut(s)	43, 1339, 1822, 1833
BseMII	CTCAG	9 cut(s)	991, 1270, 1305, 1436, 1493, 1899, 1907, 2282, 2411
BseNI	ACTGG	8 cut(s)	473, 856, 949, 1126, 1360, 1691, 2251, 2954
BseXI	GCAGC	9 cut(s)	188, 205, 343, 595, 617, 1066, 1709, 2443, 2446
BseYI	CCCAGC	2 cut(s)	571, 1564
BsgI	GTGCAG	2 cut(s)	1316, 2537
BshFI	GGCC	9 cut(s)	22, 259, 1303, 1325, 1391, 1541, 1715, 2285, 2828
BshTI	ACCGGT	2 cut(s)	50, 989
BshVI	ATCGAT	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	199
BsiHKCI	CYCGRG	2 cut(s)	872, 1593
BsiSI	CCGG	2 cut(s)	51, 990
BslFI	GGGAC	2 cut(s)	776, 1569
BslI	CCNNNNNNNGG	5 cut(s)	91, 154, 800, 1024, 1151
BsmAI	GTCTC	9 cut(s)	41, 281, 554, 662, 1104, 1259, 1446, 1596, 2724
BsmBI	CGTCTC	2 cut(s)	662, 1259
BsmFI	GGGAC	2 cut(s)	776, 1569
BsnI	GGCC	9 cut(s)	22, 259, 1303, 1325, 1391, 1541, 1715, 2285, 2828
Bso31I	GGTCTC	3 cut(s)	41, 1596, 2724
BsoBI	CYCGRG	2 cut(s)	872, 1593
Bsp119I	TTCGAA	2 cut(s)	1177, 2809
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp1407I	TGTACA	1 cut(s)	1721
Bsp143I	GATC	9 cut(s)	244, 431, 507, 1523, 1744, 1844, 1965, 2399, 2587
Bsp19I	CCATGG	2 cut(s)	814, 1320
BspACI	CCGC	8 cut(s)	133, 221, 415, 1644, 2315, 2480, 2504, 2583
BspANI	GGCC	9 cut(s)	22, 259, 1303, 1325, 1391, 1541, 1715, 2285, 2828
BspCNI	CTCAG	9 cut(s)	990, 1269, 1304, 1435, 1492, 1900, 1906, 2281, 2412
BspDI	ATCGAT	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	792
BspMAI	CTGCAG	2 cut(s)	333, 2220
BspMI	ACCTGC	1 cut(s)	1015
BspOI	GCTAGC	1 cut(s)	987
BspPI	GGATC	2 cut(s)	439, 515
BspT104I	TTCGAA	2 cut(s)	1177, 2809
BspTNI	GGTCTC	3 cut(s)	41, 1596, 2724
BsrBI	CCGCTC	2 cut(s)	415, 2506
BsrDI	GCAATG	4 cut(s)	43, 1339, 1822, 1833
BsrFI	RCCGGY	2 cut(s)	50, 989
BsrGI	TGTACA	1 cut(s)	1721
BsrI	ACTGG	8 cut(s)	473, 856, 949, 1126, 1360, 1691, 2251, 2954
BssAI	RCCGGY	2 cut(s)	50, 989
BssECI	CCNNGG	6 cut(s)	814, 873, 1320, 2174, 2379, 2617
BssMI	GATC	9 cut(s)	244, 431, 507, 1523, 1744, 1844, 1965, 2399, 2587
BssT1I	CCWWGG	3 cut(s)	814, 1320, 2379
Bst2UI	CCWGG	2 cut(s)	261, 1152
Bst4CI	ACNGT	8 cut(s)	86, 631, 900, 1381, 1452, 2178, 2374, 2649
Bst6I	CTCTTC	2 cut(s)	552, 2134
BstAPI	GCANNNNNTGC	3 cut(s)	1286, 1615, 2215
BstAUI	TGTACA	1 cut(s)	1721
BstBAI	YACGTR	1 cut(s)	1431
BstBI	TTCGAA	2 cut(s)	1177, 2809
BstC8I	GCNNGC	6 cut(s)	99, 174, 985, 1305, 1999, 2211
BstDSI	CCRYGG	3 cut(s)	814, 1320, 2174
BstF5I	GGATG	9 cut(s)	23, 406, 581, 911, 1454, 1768, 1954, 2362, 2830
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	9 cut(s)	247, 434, 510, 1526, 1747, 1847, 1968, 2402, 2590
BstMAI	GTCTC	9 cut(s)	41, 281, 554, 662, 1104, 1259, 1446, 1596, 2724
BstMBI	GATC	9 cut(s)	244, 431, 507, 1523, 1744, 1844, 1965, 2399, 2587
BstNI	CCWGG	2 cut(s)	261, 1152
BstNSI	RCATGY	1 cut(s)	477
BstPAI	GACNNNNGTC	1 cut(s)	2292
BstSCI	CCNGG	2 cut(s)	259, 1150
BstSFI	CTRYAG	4 cut(s)	329, 896, 2216, 2373
BstV1I	GCAGC	9 cut(s)	188, 205, 343, 595, 617, 1066, 1709, 2443, 2446
BstXI	CCANNNNNNTGG	1 cut(s)	1880
Bsu15I	ATCGAT	1 cut(s)	127
Bsu36I	CCTNAGG	1 cut(s)	1908
BsuRI	GGCC	9 cut(s)	22, 259, 1303, 1325, 1391, 1541, 1715, 2285, 2828
BsuTUI	ATCGAT	1 cut(s)	127
BtgI	CCRYGG	3 cut(s)	814, 1320, 2174
BtrI	CACGTC	1 cut(s)	43
BtsCI	GGATG	9 cut(s)	23, 406, 581, 911, 1454, 1768, 1954, 2362, 2830
BtsI	GCAGTG	3 cut(s)	931, 2213, 3002
BveI	ACCTGC	1 cut(s)	1015
Cac8I	GCNNGC	6 cut(s)	99, 174, 985, 1305, 1999, 2211
CaiI	CAGNNNCTG	1 cut(s)	2662
CfoI	GCGC	1 cut(s)	78
Cfr10I	RCCGGY	2 cut(s)	50, 989
Cfr13I	GGNCC	5 cut(s)	257, 790, 1539, 2555, 2827
ClaI	ATCGAT	1 cut(s)	127
CseI	GACGC	1 cut(s)	2073
Csp6I	GTAC	8 cut(s)	407, 493, 1158, 1428, 1722, 2009, 2603, 2665
CspAI	ACCGGT	2 cut(s)	50, 989
CspCI	CAANNNNNGTGG	2 cut(s)	2547, 2582
CviQI	GTAC	8 cut(s)	407, 493, 1158, 1428, 1722, 2009, 2603, 2665
DpnI	GATC	9 cut(s)	246, 433, 509, 1525, 1746, 1846, 1967, 2401, 2589
DpnII	GATC	9 cut(s)	244, 431, 507, 1523, 1744, 1844, 1965, 2399, 2587
DraI	TTTAAA	1 cut(s)	1035
DraIII	CACNNNGTG	1 cut(s)	1346
Eam1104I	CTCTTC	2 cut(s)	552, 2134
EarI	CTCTTC	2 cut(s)	552, 2134
EciI	GGCGGA	1 cut(s)	122
Eco130I	CCWWGG	3 cut(s)	814, 1320, 2379
Eco147I	AGGCCT	1 cut(s)	1391
Eco31I	GGTCTC	3 cut(s)	41, 1596, 2724
Eco32I	GATATC	1 cut(s)	2344
Eco47I	GGWCC	2 cut(s)	790, 2555
Eco57I	CTGAAG	4 cut(s)	77, 1242, 1488, 2340
Eco81I	CCTNAGG	1 cut(s)	1908
Eco88I	CYCGRG	2 cut(s)	872, 1593
EcoO109I	RGGNCCY	2 cut(s)	257, 790
EcoRI	GAATTC	1 cut(s)	972
EcoRII	CCWGG	2 cut(s)	259, 1150
EcoRV	GATATC	1 cut(s)	2344
EcoT14I	CCWWGG	3 cut(s)	814, 1320, 2379
EcoT22I	ATGCAT	1 cut(s)	2409
ErhI	CCWWGG	3 cut(s)	814, 1320, 2379
Esp3I	CGTCTC	2 cut(s)	662, 1259
FaqI	GGGAC	2 cut(s)	776, 1569
FauI	CCCGC	1 cut(s)	2590
FauNDI	CATATG	2 cut(s)	666, 1093
FbaI	TGATCA	2 cut(s)	1744, 2587
FblI	GTMKAC	2 cut(s)	721, 2180
FokI	GGATG	9 cut(s)	30, 413, 588, 918, 1441, 1775, 1961, 2369, 2817
FspBI	CTAG	7 cut(s)	143, 297, 410, 984, 1889, 1928, 2561
GlaI	GCGC	1 cut(s)	77
GsaI	CCCAGC	2 cut(s)	575, 1568
GsuI	CTGGAG	3 cut(s)	644, 873, 1833
HaeIII	GGCC	9 cut(s)	22, 259, 1303, 1325, 1391, 1541, 1715, 2285, 2828
HapII	CCGG	2 cut(s)	51, 990
HgaI	GACGC	1 cut(s)	2073
HhaI	GCGC	1 cut(s)	78
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HincII	GTYRAC	2 cut(s)	722, 1776
HindII	GTYRAC	2 cut(s)	722, 1776
HpaII	CCGG	2 cut(s)	51, 990
Hpy166II	GTNNAC	6 cut(s)	722, 1160, 1776, 2181, 2488, 2711
Hpy8I	GTNNAC	6 cut(s)	722, 1160, 1776, 2181, 2488, 2711
HpyCH4III	ACNGT	8 cut(s)	86, 631, 900, 1381, 1452, 2178, 2374, 2649
HpyCH4IV	ACGT	3 cut(s)	42, 1430, 2601
HpySE526I	ACGT	3 cut(s)	42, 1430, 2601
HspAI	GCGC	1 cut(s)	76
Ksp22I	TGATCA	2 cut(s)	1744, 2587
Kzo9I	GATC	9 cut(s)	244, 431, 507, 1523, 1744, 1844, 1965, 2399, 2587
Lsp1109I	GCAGC	9 cut(s)	188, 205, 343, 595, 617, 1066, 1709, 2443, 2446
LweI	GCATC	5 cut(s)	128, 313, 1327, 2071, 2254
MaeI	CTAG	7 cut(s)	143, 297, 410, 984, 1889, 1928, 2561
MaeII	ACGT	3 cut(s)	42, 1430, 2601
MaeIII	GTNAC	7 cut(s)	847, 940, 1195, 1346, 2242, 2461, 2495
MalI	GATC	9 cut(s)	246, 433, 509, 1525, 1746, 1846, 1967, 2401, 2589
MbiI	CCGCTC	2 cut(s)	415, 2506
MboI	GATC	9 cut(s)	244, 431, 507, 1523, 1744, 1844, 1965, 2399, 2587
MfeI	CAATTG	3 cut(s)	831, 1530, 2049
MhlI	GDGCHC	1 cut(s)	199
MlyI	GAGTC	4 cut(s)	13, 855, 1551, 1716
MmeI	TCCRAC	1 cut(s)	1045
Mph1103I	ATGCAT	1 cut(s)	2409
MroXI	GAANNNNTTC	3 cut(s)	1173, 1227, 2415
MseI	TTAA	8 cut(s)	809, 1034, 1262, 1656, 1944, 2004, 2328, 3046
MslI	CAYNNNNRTG	4 cut(s)	12, 924, 1878, 2744
MspA1I	CMGCKG	4 cut(s)	608, 1307, 1700, 2585
MspI	CCGG	2 cut(s)	51, 990
MspR9I	CCNGG	2 cut(s)	261, 1152
MunI	CAATTG	3 cut(s)	831, 1530, 2049
MvaI	CCWGG	2 cut(s)	261, 1152
NcoI	CCATGG	2 cut(s)	814, 1320
NdeI	CATATG	2 cut(s)	666, 1093
NdeII	GATC	9 cut(s)	244, 431, 507, 1523, 1744, 1844, 1965, 2399, 2587
NheI	GCTAGC	1 cut(s)	983
NlaIV	GGNNCC	1 cut(s)	792
NmuCI	GTSAC	5 cut(s)	847, 1195, 1346, 2242, 2495
NsiI	ATGCAT	1 cut(s)	2409
NspI	RCATGY	1 cut(s)	477
NspV	TTCGAA	2 cut(s)	1177, 2809
OliI	CACNNNNGTG	1 cut(s)	2744
PaqCI	CACCTGC	1 cut(s)	1015
PceI	AGGCCT	1 cut(s)	1391
PciI	ACATGT	1 cut(s)	473
PdmI	GAANNNNTTC	3 cut(s)	1173, 1227, 2415
PinAI	ACCGGT	2 cut(s)	50, 989
PleI	GAGTC	4 cut(s)	12, 854, 1551, 1715
PpsI	GAGTC	4 cut(s)	12, 854, 1551, 1715
Ppu21I	YACGTR	1 cut(s)	1431
PpuMI	RGGWCCY	1 cut(s)	790
PscI	ACATGT	1 cut(s)	473
PshAI	GACNNNNGTC	1 cut(s)	2292
PsiI	TTATAA	2 cut(s)	27, 2633
Psp5II	RGGWCCY	1 cut(s)	790
Psp6I	CCWGG	2 cut(s)	259, 1150
PspFI	CCCAGC	2 cut(s)	571, 1564
PspGI	CCWGG	2 cut(s)	259, 1150
PspN4I	GGNNCC	1 cut(s)	792
PspPI	GGNCC	5 cut(s)	257, 790, 1539, 2555, 2827
PspPPI	RGGWCCY	1 cut(s)	790
PstI	CTGCAG	2 cut(s)	333, 2220
PstNI	CAGNNNCTG	1 cut(s)	2662
PvuII	CAGCTG	3 cut(s)	608, 1307, 1700
RsaI	GTAC	8 cut(s)	408, 494, 1159, 1429, 1723, 2010, 2604, 2666
RsaNI	GTAC	8 cut(s)	407, 493, 1158, 1428, 1722, 2009, 2603, 2665
RseI	CAYNNNNRTG	4 cut(s)	12, 924, 1878, 2744
SalI	GTCGAC	1 cut(s)	720
SaqAI	TTAA	8 cut(s)	809, 1034, 1262, 1656, 1944, 2004, 2328, 3046
Sau3AI	GATC	9 cut(s)	244, 431, 507, 1523, 1744, 1844, 1965, 2399, 2587
Sau96I	GGNCC	5 cut(s)	257, 790, 1539, 2555, 2827
SchI	GAGTC	4 cut(s)	13, 855, 1551, 1716
ScrFI	CCNGG	2 cut(s)	261, 1152
SduI	GDGCHC	1 cut(s)	199
SfaNI	GCATC	5 cut(s)	128, 313, 1327, 2071, 2254
SfcI	CTRYAG	4 cut(s)	329, 896, 2216, 2373
SfuI	TTCGAA	2 cut(s)	1177, 2809
SinI	GGWCC	2 cut(s)	790, 2555
SmiMI	CAYNNNNRTG	4 cut(s)	12, 924, 1878, 2744
SmlI	CTYRAG	3 cut(s)	648, 773, 1559
SmoI	CTYRAG	3 cut(s)	648, 773, 1559
SpeI	ACTAGT	2 cut(s)	142, 2560
SseBI	AGGCCT	1 cut(s)	1391
SsiI	CCGC	8 cut(s)	133, 221, 415, 1644, 2315, 2480, 2504, 2583
SspI	AATATT	2 cut(s)	1576, 2452
SspMI	CTAG	7 cut(s)	143, 297, 410, 984, 1889, 1928, 2561
StuI	AGGCCT	1 cut(s)	1391
StyD4I	CCNGG	2 cut(s)	259, 1150
StyI	CCWWGG	3 cut(s)	814, 1320, 2379
TaaI	ACNGT	8 cut(s)	86, 631, 900, 1381, 1452, 2178, 2374, 2649
TaiI	ACGT	3 cut(s)	45, 1433, 2604
TaqI	TCGA	8 cut(s)	127, 721, 1177, 1522, 1672, 2644, 2809, 2988
TaqII	GACCGA	1 cut(s)	2631
TatI	WGTACW	3 cut(s)	406, 1157, 1721
TauI	GCSGC	3 cut(s)	224, 2318, 2483
Tru1I	TTAA	8 cut(s)	809, 1034, 1262, 1656, 1944, 2004, 2328, 3046
Tru9I	TTAA	8 cut(s)	809, 1034, 1262, 1656, 1944, 2004, 2328, 3046
TseFI	GTSAC	5 cut(s)	847, 1195, 1346, 2242, 2495
TseI	GCWGC	9 cut(s)	176, 218, 331, 605, 608, 1079, 1697, 2431, 2434
Tsp45I	GTSAC	5 cut(s)	847, 1195, 1346, 2242, 2495
TspGWI	ACGGA	2 cut(s)	196, 2848
VpaK11BI	GGWCC	2 cut(s)	790, 2555
XapI	RAATTY	5 cut(s)	376, 425, 956, 972, 2798
XceI	RCATGY	1 cut(s)	477
XmiI	GTMKAC	2 cut(s)	721, 2180
XmnI	GAANNNNTTC	3 cut(s)	1173, 1227, 2415
XspI	CTAG	7 cut(s)	143, 297, 410, 984, 1889, 1928, 2561
Zsp2I	ATGCAT	1 cut(s)	2409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.