Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

33571906 .. 33572382

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00355000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGGAATAATTGGTGGCCACTGTTGCCAAAAGAAAGAAAAAAAAAAGGGGGGGGGGGCAACAAAGAAACAGAGAAGAAGAAGAATAAGAAGAAGAAGAAGGCAAGCACGGAAACAACTTAGAGCATATACCCAAGCCCTACGAGCTGCGGCTATCTTCAAAGAAGTTGCAGATCATGTGAAAGGGCCTGGTGGTGATTTTCCAATTGAACCAGATAAACTTGCTAGTTTGACGAGGGATAGTGATGTTGATGCTCTGCAGCAATATGGGGGAAAGAAGGCTTGGCGATTTACCGAAAACAAATTTAGTCAAGGGATCGTTTTGGTGATTGCTTTTGTGGGTTCTGTTGTGATGGGTATTATGGAAGAGACTAAAAAGCTGGGATGGCACGATGTATTCAGCGTTGCTATTGCAGCTGCCATGTTCATTTTTATCACAGTCTTATCTAACTATACTCAAGCTCGTCTCCGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

158

Amino Acids

17.76

Weight (kDa)

10.63

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	149, 469
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	16
AcsI	RAATTY	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	160, 209
AjnI	CCWGG	1 cut(s)	187
AjuI	GAANNNNNNNTTGG	2 cut(s)	265, 297
AluBI	AGCT	4 cut(s)	146, 379, 416, 461
AluI	AGCT	4 cut(s)	146, 379, 416, 461
Alw26I	GTCTC	2 cut(s)	362, 470
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	2 cut(s)	16, 185
ApeKI	GCWGC	4 cut(s)	146, 259, 413, 416
ApoI	RAATTY	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	206, 337
BalI	TGGCCA	1 cut(s)	18
BbvI	GCAGC	4 cut(s)	133, 271, 403, 425
BccI	CCATC	2 cut(s)	346, 378
BciT130I	CCWGG	1 cut(s)	189
BcoDI	GTCTC	2 cut(s)	362, 470
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	257
BisI	GCNGC	5 cut(s)	147, 150, 260, 414, 417
BlsI	GCNGC	5 cut(s)	148, 151, 261, 415, 418
Bme1390I	CCNGG	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	389
BseXI	GCAGC	4 cut(s)	133, 271, 403, 425
BseYI	CCCAGC	1 cut(s)	379
BshFI	GGCC	2 cut(s)	18, 187
BsmAI	GTCTC	2 cut(s)	362, 470
BsmBI	CGTCTC	1 cut(s)	470
BsnI	GGCC	2 cut(s)	18, 187
Bsp143I	GATC	2 cut(s)	172, 315
BspACI	CCGC	2 cut(s)	149, 469
BspANI	GGCC	2 cut(s)	18, 187
BspMAI	CTGCAG	1 cut(s)	261
BspPI	GGATC	1 cut(s)	323
BssMI	GATC	2 cut(s)	172, 315
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	23, 439
Bst6I	CTCTTC	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	389
BstKTI	GATC	2 cut(s)	175, 318
BstMAI	GTCTC	2 cut(s)	362, 470
BstMBI	GATC	2 cut(s)	172, 315
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 143, 385, 413
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	257
BstV1I	GCAGC	4 cut(s)	133, 271, 403, 425
BsuRI	GGCC	2 cut(s)	18, 187
BtsCI	GGATG	1 cut(s)	389
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	185
CviAII	CATG	2 cut(s)	176, 421
CviJI	RGCY	9 cut(s)	18, 137, 146, 152, 187, 281, 379, 416, 461
CviKI_1	RGCY	9 cut(s)	18, 137, 146, 152, 187, 281, 379, 416, 461
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	2 cut(s)	174, 317
DpnII	GATC	2 cut(s)	172, 315
EaeI	YGGCCR	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	187
Esp3I	CGTCTC	1 cut(s)	470
FaeI	CATG	2 cut(s)	179, 424
FaiI	YATR	9 cut(s)	127, 129, 177, 267, 362, 422, 453, 473, 475
FatI	CATG	2 cut(s)	175, 420
FauNDI	CATATG	1 cut(s)	473
Fnu4HI	GCNGC	5 cut(s)	147, 150, 260, 414, 417
FokI	GGATG	1 cut(s)	396
Fsp4HI	GCNGC	5 cut(s)	147, 150, 260, 414, 417
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	5 cut(s)	147, 150, 260, 414, 417
GsaI	CCCAGC	1 cut(s)	383
HaeIII	GGCC	2 cut(s)	18, 187
Hin1II	CATG	2 cut(s)	179, 424
HphI	GGTGA	2 cut(s)	206, 337
HpyAV	CCTTC	2 cut(s)	93, 271
HpyCH4III	ACNGT	2 cut(s)	23, 439
HpyCH4V	TGCA	3 cut(s)	170, 259, 413
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 143, 385, 413
HpyF3I	CTNAG	1 cut(s)	119
Hsp92II	CATG	2 cut(s)	179, 424
Kzo9I	GATC	2 cut(s)	172, 315
LpnPI	CCDG	4 cut(s)	174, 201, 225, 365
Lsp1109I	GCAGC	4 cut(s)	133, 271, 403, 425
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	225
MalI	GATC	2 cut(s)	174, 317
MboI	GATC	2 cut(s)	172, 315
MboII	GAAGA	8 cut(s)	87, 90, 93, 102, 105, 108, 148, 377
MfeI	CAATTG	1 cut(s)	204
MlsI	TGGCCA	1 cut(s)	18
MluCI	AATT	3 cut(s)	9, 204, 302
MluNI	TGGCCA	1 cut(s)	18
MnlI	CCTC	1 cut(s)	228
Mox20I	TGGCCA	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	18
Msp20I	TGGCCA	1 cut(s)	18
MspA1I	CMGCKG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	189
MunI	CAATTG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	24, 143, 385, 413
NdeI	CATATG	1 cut(s)	473
NdeII	GATC	2 cut(s)	172, 315
NlaIII	CATG	2 cut(s)	179, 424
PkrI	GCNGC	5 cut(s)	148, 151, 261, 415, 418
Psp6I	CCWGG	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	261
PvuII	CAGCTG	1 cut(s)	416
SatI	GCNGC	5 cut(s)	147, 150, 260, 414, 417
Sau3AI	GATC	2 cut(s)	172, 315
Sau96I	GGNCC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	4 cut(s)	148, 381, 418, 463
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
Sse9I	AATT	3 cut(s)	9, 204, 302
SsiI	CCGC	2 cut(s)	149, 469
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	23, 439
TasI	AATT	3 cut(s)	9, 204, 302
TauI	GCSGC	1 cut(s)	152
TscAI	CASTG	1 cut(s)	26
TseI	GCWGC	4 cut(s)	146, 259, 413, 416
TspDTI	ATGAA	1 cut(s)	415
TspGWI	ACGGA	1 cut(s)	124
TspRI	CASTG	1 cut(s)	26
XapI	RAATTY	1 cut(s)	302
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.