Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

15019384 .. 15045547

Gene Structure 26164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG087200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3171 bp

ATGGAGCTCCCATGTAAACCACGGAAGGAAGGGGATGCAGGTACTCAATTTACTTCAACTTGGACGCCGATTGCTTGTCCGACAATATGGCCATCCATCCGGTCCTTCCTATTGATCATAGGAACGCGGCATGACGTAAACCCTACTACCGCCACGGCAAGTCTGGAGAAGACTACAACACCAGCTCACAGAAGGATGAGTCACTCAAGAGGGTTGCCTTATAACACAAGCAATGATTTGGAGACCGGTCTAAAGGAGGTTCCTGCTGAGCGCATGAACCGTTGGGTGCAAGCGAAACTACTTCATAAAGCATTATATCGATTCCGCCACACACTAGTCCTGAAAAGGGCAGAAGAAAAGAAGCAGGCGGCACGGAAACTTAGAGCACATGCCCAAGCCCTACGAGCTGCGGCTATCTTCAAAGAAGTTGCAGATCAAGTGAAAGGGACGGGTGATTATTTTCCAATTGAACCAGATGAACTTGCTAGTTTGATGAGGAATAGTGATGTTGATGCTCTGCAGCAATATGGGGGGAAGGAAGGCTTGGCAGATTTACTGAAAACAGATTTAGACAAGGGCATTGATGGGGATGATTTACTAAAGCGGAGAATTAAATTTGGATCAAACATATATCCTCCAAAAACAGCAACGAGCCACTGGACATGTCTTTGGGAAGCTCTGTACAATTTTACTCGGATCGTTTTGGTGATTGCTTTTATGGGTTCTGTTGTGATGGGTATTCTGGAAGAGACTAAAAAGCTGGGATGGCACGATGTGTTCAGCGTTGCTATTGCAGCTGCCATGTTCATTCTTATGACAGTCTTATCTGAGTATACTCAAGCTCGTCAGTTCCAGCATATGATTAGCAGGGAGGAAATCAGAAACATAAAATCGAAGGTTATTAGAGCTGGTCGACAAGTTGTGGTTTCTAATTGTGATATTGTTGTTGGTGATGTTCTACCCCTCAAGACTGGTGATGAGGTCCTTGCTGATGGCATTTTAATCCGTGGTCGCTCACTTGCAATTGATAAGAGTAGAGTCACTGGAGAGAGCAAGATTTTTCACAAGGATTCAAGGAACCCATTTCTACTGTCTGGCTGGAAAGTAGCACATGGCAGTGCTACTATGCTGGTAACTGGGGTTGGGAAATGTACTGAATCAGGAATTCTCAGGACTAGCACTTCTTCAAATGACACCGAGAATAAAACCCCCTTGCAGGTGCTTTTAAAGGAGGTTGCTACTTTCATGGGTGCTGTCGGATTCATGGGTGCTGCCATTGTTGCATATGTTGTTTGGTTCAGAGACTTCTTTACTGGTTATAATTCAAATGGAAGTCCTGAACCTGGAAGTACACTTGAAGAAGTGATTAGAATTAGTACCATTGCAGTCGCCATTTTTGTCGTTGCATTACCTGAAGTACTTCCTTCAGCTTTCAACATAACCCGTCTCAGCTCTATGAAAAAGATGAAGGCAGACAATTGCTTGGTGCGGAGGCCAGCTGTATGTGAAACCATGGCCTTATGCACTGATGCACTTTGTGACAAGACTGGAATAACTTTGAACCAGATGACTGTTTCTGAGGCCTATGCTGGTCAGAAGAAAATCAATTTTGCTGACAGCACAAGCAACTTGTCTCCGATATTATCGTCCTTACTCGTTGAAGGAATTGCTCAGAATACGAGTGGCATTCTATCTGTGCTTGGGAGTGGTGATGTTCAGGCTTCTGGATCACCAATTGATAGGGCAATTCTGCATTGGGGAGTCAAGCTGGGAATGAATTTTGATGACATAACGTCTCAGTCTCCAGTTATGAAAGTTTTGCCATTCAGTTCAGAGAAAAAACGAGGTGGTGTTGCACTTAATCTGACACACGGTCGAGTTCATGTACACTGGAAAGGGGAAGCTGAAGGAGTCTTAGCCTCATGTACAAGATACATTGGGGCTAATGATCAGGTTTTACCAATGGATGATGATAAGTTAACATTTTTTCAAAAAGCTATCCAGGATATGGCTTCTGGAGGCTTGCATTGCGTTGCTATTGCATATACATCACTTGAATTGCAAAATGTTCTAATCAATAGTAATGGACAACTAGCGCGGTGGGAACTACCTGAGGATGACCTCATTTTACTAGCTATTGTTGGTATTAAGGATGATTGTCAACCGGGGATCAAGGACTCGGTGGAAATATTGCAAAGAGCTGGCATTAAGGTACGCCTTGTTACGCATGACAATCCTCAAACTGCAAAAGCACTTGCTAAGGAATGTAGCATACTTGCTTCTGATGGGTCAGACGCTAGTGAGGAAAATCTTATTGAAGGAAAAGTGTTCCGAGAACTTTCTGATAGTCAGAGAGAAGAATTAGCAGAGAAGATTTTGGTAATGGCATGGTCTTCCCCCAATGACAAGCTTTTGCTTGTGCGAGCACTGCAGAAAAGAGGAAAGATTGTTGCTGTCACTGGATATGTCAGTAATGATGCTCATACACTACATGAGGGTTTCAGATGGGGACGATCTATACATGAAAAGGTTCTGAAAGTTATGCAGCAGCAACTTACAGCCAATATTGTAGCAGTAACTATAAACTGCATGGCGGCAGTTTACTATCGTCACATCCCGCTCAATGCTGTGCAGTTTGTGTGGGTGAATCTTATCATATTTGGTCTTGGACCACTAGCATTGACTACTGAATCTCCGGCTGATCACCTGATGAACGTACCCCCTATTGACCGAGGACAAACTATTATAAAATATATTCAGTGGAAGAGACTGTTGATACAGGTTCTCTACCAAATTATTGCCCTGCTTGTCATCAATTTTCAAGGAGGGAGTTTACTGAAAAATTATACCAGAGACCATGCCACAAAAGTGAAGAATACAATGATATTCAACACATTTGTTGTTTGTCAGATTTCCATTGAATTCGGAGTTCGAAAGACTGGTATAGTGGACCATCCTTTGAAATGGATTACTGCTAACTCTGTGTTTCTGGGAATAGCTGGAATAATTCTTGTGATTCAGTTTATCATCATTGAGTTTCTTGGAAAGGCGTTTTTCATAGTTAGGCTTGACTGGAAAGAGTGGCAGTTTTCGCTTACTCTTGGTATTGTTGAGTTGTTGTTTGCACTGCTTCTATTTCTGAAGCACTTGACACAAAGGAATCATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1056

Amino Acids

116.88

Weight (kDa)

8.91

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	176 - 238	7.7e-11	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	296 - 388	2.1e-15	P-type ATPase actuator domain
Cation_ATPase	PF13246	550 - 722	3.8e-25	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	872 - 1042	1.9e-24	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	222, 1320, 2747
AarI	CACCTGC	1 cut(s)	1207
Acc36I	ACCTGC	2 cut(s)	29, 1207
AccB7I	CCANNNNNTGG	1 cut(s)	2008
AccBSI	CCGCTC	1 cut(s)	2620
AccI	GTMKAC	2 cut(s)	833, 913
AccII	CGCG	2 cut(s)	127, 2098
AclWI	GGATC	4 cut(s)	628, 704, 1735, 2177
AcoI	YGGCCR	1 cut(s)	89
AcsI	RAATTY	4 cut(s)	614, 1164, 1777, 2921
AcuI	CTGAAG	4 cut(s)	1410, 1434, 1926, 3161
AcyI	GRCGYC	1 cut(s)	65
AdeI	CACNNNGTG	2 cut(s)	775, 1538
AfiI	CCNNNNNNNGG	4 cut(s)	346, 1216, 1343, 2008
AflIII	ACRYGT	1 cut(s)	662
AgeI	ACCGGT	1 cut(s)	245
AhdI	GACNNNNNGTC	2 cut(s)	1792, 1872
AhlI	ACTAGT	1 cut(s)	334
AjnI	CCWGG	2 cut(s)	1342, 2001
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
AleI	CACNNNNGTG	1 cut(s)	2867
Alw21I	GWGCWC	3 cut(s)	9, 388, 2428
Alw26I	GTCTC	9 cut(s)	236, 743, 1296, 1451, 1638, 1800, 1806, 2761, 2847
AlwI	GGATC	4 cut(s)	628, 704, 1735, 2177
AoxI	GGCC	4 cut(s)	89, 1493, 1515, 1581
ApeKI	GCWGC	7 cut(s)	407, 520, 794, 797, 1271, 2545, 2548
ApoI	RAATTY	4 cut(s)	614, 1164, 1777, 2921
AsiGI	ACCGGT	1 cut(s)	245
Asp700I	GAANNNNTTC	2 cut(s)	1419, 2529
AspLEI	GCGC	2 cut(s)	273, 2098
AspS9I	GGNCC	4 cut(s)	102, 982, 2669, 2950
AsuC2I	CCSGG	1 cut(s)	2166
AsuHPI	GGTGA	8 cut(s)	464, 718, 962, 986, 1721, 1722, 2656, 2696
AsuII	TTCGAA	1 cut(s)	2932
AvaII	GGWCC	4 cut(s)	102, 982, 2669, 2950
AxyI	CCTNAGG	1 cut(s)	2112
BalI	TGGCCA	1 cut(s)	91
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	2 cut(s)	176, 2385
Bbv12I	GWGCWC	3 cut(s)	9, 388, 2428
BbvI	GCAGC	7 cut(s)	394, 532, 784, 806, 1258, 2557, 2560
BccI	CCATC	9 cut(s)	100, 104, 578, 727, 759, 986, 2279, 2499, 2961
BceAI	ACGGC	1 cut(s)	171
BciT130I	CCWGG	2 cut(s)	1344, 2003
BclI	TGATCA	3 cut(s)	114, 1948, 2701
BcnI	CCSGG	1 cut(s)	2166
BcoDI	GTCTC	9 cut(s)	236, 743, 1296, 1451, 1638, 1800, 1806, 2761, 2847
BcuI	ACTAGT	1 cut(s)	334
BfaI	CTAG	7 cut(s)	335, 486, 1176, 2093, 2132, 2298, 2675
BfmI	CTRYAG	2 cut(s)	518, 2429
BfuAI	ACCTGC	2 cut(s)	29, 1207
BlpI	GCTNAGC	1 cut(s)	267
BmcAI	AGTACT	1 cut(s)	1419
Bme1390I	CCNGG	3 cut(s)	1344, 2003, 2166
Bme18I	GGWCC	4 cut(s)	102, 982, 2669, 2950
BmeRI	GACNNNNNGTC	2 cut(s)	1792, 1872
BmgT120I	GGNCC	4 cut(s)	102, 982, 2669, 2950
BmiI	GGNNCC	2 cut(s)	261, 1079
BmrFI	CCNGG	3 cut(s)	1344, 2003, 2166
BmrI	ACTGGG	1 cut(s)	1146
BmsI	GCATC	4 cut(s)	25, 502, 1519, 2467
BmuI	ACTGGG	1 cut(s)	1146
BpiI	GAAGAC	2 cut(s)	176, 2385
BpmI	CTGGAG	4 cut(s)	185, 1065, 1788, 2037
Bpu10I	CCTNAGC	1 cut(s)	2259
Bpu1102I	GCTNAGC	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	2932
BpuEI	CTTGAG	3 cut(s)	190, 822, 950
BpuMI	CCSGG	1 cut(s)	2166
Bsa29I	ATCGAT	1 cut(s)	319
BsaHI	GRCGYC	1 cut(s)	65
BsaI	GGTCTC	2 cut(s)	236, 2847
BsaJI	CCNNGG	6 cut(s)	20, 153, 1006, 1512, 2165, 2731
BsaWI	WCCGGW	2 cut(s)	99, 245
BsaXI	ACNNNNNCTCC	2 cut(s)	2677, 2707
Bsc4I	CCNNNNNNNGG	4 cut(s)	346, 1216, 1343, 2008
Bse118I	RCCGGY	1 cut(s)	245
Bse21I	CCTNAGG	1 cut(s)	2112
Bse3DI	GCAATG	3 cut(s)	238, 1380, 2026
BseBI	CCWGG	2 cut(s)	1344, 2003
BseCI	ATCGAT	1 cut(s)	319
BseDI	CCNNGG	6 cut(s)	20, 153, 1006, 1512, 2165, 2731
BseLI	CCNNNNNNNGG	4 cut(s)	346, 1216, 1343, 2008
BseMI	GCAATG	3 cut(s)	238, 1380, 2026
BseMII	CTCAG	8 cut(s)	258, 819, 1183, 1462, 1569, 1685, 1811, 2103
BseXI	GCAGC	7 cut(s)	394, 532, 784, 806, 1258, 2557, 2560
BseYI	CCCAGC	2 cut(s)	760, 1768
BsgI	GTGCAG	1 cut(s)	2651
Bsh1236I	CGCG	2 cut(s)	127, 2098
Bsh1285I	CGRYCG	1 cut(s)	1876
BshFI	GGCC	4 cut(s)	91, 1495, 1517, 1583
BshTI	ACCGGT	1 cut(s)	245
BshVI	ATCGAT	1 cut(s)	319
BsiEI	CGRYCG	1 cut(s)	1876
BsiHKAI	GWGCWC	3 cut(s)	9, 388, 2428
BsiSI	CCGG	4 cut(s)	100, 246, 2165, 2696
BslFI	GGGAC	2 cut(s)	460, 2523
BslI	CCNNNNNNNGG	4 cut(s)	346, 1216, 1343, 2008
BsmAI	GTCTC	9 cut(s)	236, 743, 1296, 1451, 1638, 1800, 1806, 2761, 2847
BsmBI	CGTCTC	2 cut(s)	1451, 1800
BsmFI	GGGAC	2 cut(s)	460, 2523
BsmI	GAATGC	1 cut(s)	1686
BsnI	GGCC	4 cut(s)	91, 1495, 1517, 1583
Bso31I	GGTCTC	2 cut(s)	236, 2847
Bsp119I	TTCGAA	1 cut(s)	2932
Bsp1286I	GDGCHC	3 cut(s)	9, 388, 2428
Bsp1407I	TGTACA	3 cut(s)	681, 1885, 1925
Bsp143I	GATC	9 cut(s)	114, 433, 620, 696, 1727, 1948, 2169, 2513, 2701
Bsp1720I	GCTNAGC	1 cut(s)	267
Bsp19I	CCATGG	1 cut(s)	1512
BspANI	GGCC	4 cut(s)	91, 1495, 1517, 1583
BspCNI	CTCAG	8 cut(s)	259, 820, 1182, 1461, 1570, 1684, 1810, 2104
BspDI	ATCGAT	1 cut(s)	319
BspFNI	CGCG	2 cut(s)	127, 2098
BspLI	GGNNCC	2 cut(s)	261, 1079
BspMAI	CTGCAG	2 cut(s)	522, 2433
BspMI	ACCTGC	2 cut(s)	29, 1207
BspPI	GGATC	4 cut(s)	628, 704, 1735, 2177
BspT104I	TTCGAA	1 cut(s)	2932
BspTNI	GGTCTC	2 cut(s)	236, 2847
BsrBI	CCGCTC	1 cut(s)	2620
BsrDI	GCAATG	3 cut(s)	238, 1380, 2026
BsrFI	RCCGGY	1 cut(s)	245
BsrGI	TGTACA	3 cut(s)	681, 1885, 1925
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	6 cut(s)	20, 153, 1006, 1512, 2165, 2731
BssMI	GATC	9 cut(s)	114, 433, 620, 696, 1727, 1948, 2169, 2513, 2701
BssNAI	GTATAC	1 cut(s)	834
BssNI	GRCGYC	1 cut(s)	65
BssT1I	CCWWGG	1 cut(s)	1512
Bst1107I	GTATAC	1 cut(s)	834
Bst2UI	CCWGG	2 cut(s)	1344, 2003
Bst4CI	ACNGT	6 cut(s)	281, 820, 1092, 1573, 1874, 2772
Bst6I	CTCTTC	2 cut(s)	741, 2759
BstACI	GRCGYC	1 cut(s)	65
BstAUI	TGTACA	3 cut(s)	681, 1885, 1925
BstBI	TTCGAA	1 cut(s)	2932
BstC8I	GCNNGC	6 cut(s)	291, 366, 1497, 2024, 2203, 2424
BstDSI	CCRYGG	4 cut(s)	20, 153, 1006, 1512
BstFNI	CGCG	2 cut(s)	127, 2098
BstHHI	GCGC	2 cut(s)	273, 2098
BstKTI	GATC	9 cut(s)	117, 436, 623, 699, 1730, 1951, 2172, 2516, 2704
BstMAI	GTCTC	9 cut(s)	236, 743, 1296, 1451, 1638, 1800, 1806, 2761, 2847
BstMBI	GATC	9 cut(s)	114, 433, 620, 696, 1727, 1948, 2169, 2513, 2701
BstMCI	CGRYCG	1 cut(s)	1876
BstMWI	GCNNNNNNNGC	7 cut(s)	404, 766, 794, 1280, 2028, 2428, 3091
BstNI	CCWGG	2 cut(s)	1344, 2003
BstNSI	RCATGY	2 cut(s)	392, 666
BstSCI	CCNGG	3 cut(s)	1342, 2001, 2164
BstSFI	CTRYAG	2 cut(s)	518, 2429
BstUI	CGCG	2 cut(s)	127, 2098
BstV1I	GCAGC	7 cut(s)	394, 532, 784, 806, 1258, 2557, 2560
BstV2I	GAAGAC	2 cut(s)	176, 2385
BstZ17I	GTATAC	1 cut(s)	834
Bsu15I	ATCGAT	1 cut(s)	319
Bsu36I	CCTNAGG	1 cut(s)	2112
BsuRI	GGCC	4 cut(s)	91, 1495, 1517, 1583
BsuTUI	ATCGAT	1 cut(s)	319
BtgI	CCRYGG	4 cut(s)	20, 153, 1006, 1512
BtsI	GCAGTG	3 cut(s)	1123, 2426, 3125
BtsIMutI	CAGTG	9 cut(s)	655, 1041, 1123, 1524, 1888, 2426, 2457, 2765, 3125
BveI	ACCTGC	2 cut(s)	29, 1207
Cac8I	GCNNGC	6 cut(s)	291, 366, 1497, 2024, 2203, 2424
CfoI	GCGC	2 cut(s)	273, 2098
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	4 cut(s)	102, 982, 2669, 2950
ClaI	ATCGAT	1 cut(s)	319
CseI	GACGC	2 cut(s)	73, 2303
CspAI	ACCGGT	1 cut(s)	245
CspCI	CAANNNNNGTGG	2 cut(s)	2661, 2696
DpnI	GATC	9 cut(s)	116, 435, 622, 698, 1729, 1950, 2171, 2515, 2703
DpnII	GATC	9 cut(s)	114, 433, 620, 696, 1727, 1948, 2169, 2513, 2701
DraI	TTTAAA	1 cut(s)	1227
DraIII	CACNNNGTG	2 cut(s)	775, 1538
DriI	GACNNNNNGTC	2 cut(s)	1792, 1872
EaeI	YGGCCR	1 cut(s)	89
Eam1104I	CTCTTC	2 cut(s)	741, 2759
Eam1105I	GACNNNNNGTC	2 cut(s)	1792, 1872
EarI	CTCTTC	2 cut(s)	741, 2759
EciI	GGCGGA	1 cut(s)	314
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	1512
Eco147I	AGGCCT	1 cut(s)	1583
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	2 cut(s)	236, 2847
Eco47I	GGWCC	4 cut(s)	102, 982, 2669, 2950
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	4 cut(s)	1410, 1434, 1926, 3161
Eco81I	CCTNAGG	1 cut(s)	2112
EcoICRI	GAGCTC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	982
EcoRI	GAATTC	2 cut(s)	1164, 2921
EcoRII	CCWGG	2 cut(s)	1342, 2001
EcoT14I	CCWWGG	1 cut(s)	1512
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	1512
Esp3I	CGTCTC	2 cut(s)	1451, 1800
FalI	AAGNNNNNCTT	2 cut(s)	527, 559
FaqI	GGGAC	2 cut(s)	460, 2523
FauI	CCCGC	1 cut(s)	2625
FauNDI	CATATG	2 cut(s)	858, 1285
FbaI	TGATCA	3 cut(s)	114, 1948, 2701
FblI	GTMKAC	2 cut(s)	833, 913
FriOI	GRGCYC	1 cut(s)	9
FspBI	CTAG	7 cut(s)	335, 486, 1176, 2093, 2132, 2298, 2675
GlaI	GCGC	2 cut(s)	272, 2097
GsaI	CCCAGC	2 cut(s)	764, 1772
GsuI	CTGGAG	4 cut(s)	185, 1065, 1788, 2037
HaeIII	GGCC	4 cut(s)	91, 1495, 1517, 1583
HapII	CCGG	4 cut(s)	100, 246, 2165, 2696
HgaI	GACGC	2 cut(s)	73, 2303
HhaI	GCGC	2 cut(s)	273, 2098
Hin1I	GRCGYC	1 cut(s)	65
Hin6I	GCGC	2 cut(s)	271, 2096
HinP1I	GCGC	2 cut(s)	271, 2096
HincII	GTYRAC	3 cut(s)	914, 1980, 2162
HindII	GTYRAC	3 cut(s)	914, 1980, 2162
HindIII	AAGCTT	1 cut(s)	2408
HpaI	GTTAAC	1 cut(s)	1980
HpaII	CCGG	4 cut(s)	100, 246, 2165, 2696
HphI	GGTGA	8 cut(s)	464, 718, 962, 986, 1721, 1722, 2656, 2696
HpyCH4III	ACNGT	6 cut(s)	281, 820, 1092, 1573, 1874, 2772
HpyCH4IV	ACGT	3 cut(s)	135, 1793, 2715
HpyF10VI	GCNNNNNNNGC	7 cut(s)	404, 766, 794, 1280, 2028, 2428, 3091
HpySE526I	ACGT	3 cut(s)	135, 1793, 2715
Hsp92I	GRCGYC	1 cut(s)	65
HspAI	GCGC	2 cut(s)	271, 2096
Ksp22I	TGATCA	3 cut(s)	114, 1948, 2701
KspAI	GTTAAC	1 cut(s)	1980
Kzo9I	GATC	9 cut(s)	114, 433, 620, 696, 1727, 1948, 2169, 2513, 2701
LmnI	GCTCC	2 cut(s)	4, 12
Lsp1109I	GCAGC	7 cut(s)	394, 532, 784, 806, 1258, 2557, 2560
LweI	GCATC	4 cut(s)	25, 502, 1519, 2467
MaeI	CTAG	7 cut(s)	335, 486, 1176, 2093, 2132, 2298, 2675
MaeII	ACGT	3 cut(s)	135, 1793, 2715
MaeIII	GTNAC	8 cut(s)	200, 1039, 1132, 1538, 2221, 2455, 2575, 2609
MalI	GATC	9 cut(s)	116, 435, 622, 698, 1729, 1950, 2171, 2515, 2703
MbiI	CCGCTC	1 cut(s)	2620
MboI	GATC	9 cut(s)	114, 433, 620, 696, 1727, 1948, 2169, 2513, 2701
MfeI	CAATTG	4 cut(s)	465, 1023, 1477, 1734
MhlI	GDGCHC	3 cut(s)	9, 388, 2428
MlsI	TGGCCA	1 cut(s)	91
MluNI	TGGCCA	1 cut(s)	91
MlyI	GAGTC	5 cut(s)	208, 1047, 1770, 1920, 2171
MmeI	TCCRAC	2 cut(s)	104, 1237
Mox20I	TGGCCA	1 cut(s)	91
MroXI	GAANNNNTTC	2 cut(s)	1419, 2529
MscI	TGGCCA	1 cut(s)	91
MseI	TTAA	7 cut(s)	612, 1001, 1226, 1860, 1979, 2148, 2208
MslI	CAYNNNNRTG	3 cut(s)	812, 1116, 2867
Msp20I	TGGCCA	1 cut(s)	91
MspA1I	CMGCKG	2 cut(s)	797, 1499
MspI	CCGG	4 cut(s)	100, 246, 2165, 2696
MspR9I	CCNGG	3 cut(s)	1344, 2003, 2166
MunI	CAATTG	4 cut(s)	465, 1023, 1477, 1734
Mva1269I	GAATGC	1 cut(s)	1686
MvaI	CCWGG	2 cut(s)	1344, 2003
MvnI	CGCG	2 cut(s)	127, 2098
MwoI	GCNNNNNNNGC	7 cut(s)	404, 766, 794, 1280, 2028, 2428, 3091
NciI	CCSGG	1 cut(s)	2166
NcoI	CCATGG	1 cut(s)	1512
NdeI	CATATG	2 cut(s)	858, 1285
NdeII	GATC	9 cut(s)	114, 433, 620, 696, 1727, 1948, 2169, 2513, 2701
NlaIV	GGNNCC	2 cut(s)	261, 1079
NmuCI	GTSAC	5 cut(s)	200, 1039, 1538, 2455, 2609
NspI	RCATGY	2 cut(s)	392, 666
NspV	TTCGAA	1 cut(s)	2932
OliI	CACNNNNGTG	1 cut(s)	2867
PaqCI	CACCTGC	1 cut(s)	1207
PceI	AGGCCT	1 cut(s)	1583
PciI	ACATGT	1 cut(s)	662
PctI	GAATGC	1 cut(s)	1686
PdmI	GAANNNNTTC	2 cut(s)	1419, 2529
PfeI	GAWTC	8 cut(s)	321, 1070, 1157, 1260, 2647, 2690, 3016, 3160
PflMI	CCANNNNNTGG	1 cut(s)	2008
PfoI	TCCNGGA	1 cut(s)	2001
PinAI	ACCGGT	1 cut(s)	245
PleI	GAGTC	5 cut(s)	207, 1046, 1769, 1919, 2171
PpsI	GAGTC	5 cut(s)	207, 1046, 1769, 1919, 2171
PpuMI	RGGWCCY	1 cut(s)	982
PscI	ACATGT	1 cut(s)	662
PsiI	TTATAA	3 cut(s)	222, 1320, 2747
Psp124BI	GAGCTC	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	982
Psp6I	CCWGG	2 cut(s)	1342, 2001
PspFI	CCCAGC	2 cut(s)	760, 1768
PspGI	CCWGG	2 cut(s)	1342, 2001
PspN4I	GGNNCC	2 cut(s)	261, 1079
PspPI	GGNCC	4 cut(s)	102, 982, 2669, 2950
PspPPI	RGGWCCY	1 cut(s)	982
PstI	CTGCAG	2 cut(s)	522, 2433
PvuII	CAGCTG	2 cut(s)	797, 1499
RseI	CAYNNNNRTG	3 cut(s)	812, 1116, 2867
SacI	GAGCTC	1 cut(s)	9
SalI	GTCGAC	1 cut(s)	912
SaqAI	TTAA	7 cut(s)	612, 1001, 1226, 1860, 1979, 2148, 2208
Sau3AI	GATC	9 cut(s)	114, 433, 620, 696, 1727, 1948, 2169, 2513, 2701
Sau96I	GGNCC	4 cut(s)	102, 982, 2669, 2950
ScaI	AGTACT	1 cut(s)	1419
SchI	GAGTC	5 cut(s)	208, 1047, 1770, 1920, 2171
ScrFI	CCNGG	3 cut(s)	1344, 2003, 2166
SduI	GDGCHC	3 cut(s)	9, 388, 2428
SfaNI	GCATC	4 cut(s)	25, 502, 1519, 2467
SfcI	CTRYAG	2 cut(s)	518, 2429
SfuI	TTCGAA	1 cut(s)	2932
SinI	GGWCC	4 cut(s)	102, 982, 2669, 2950
SmiMI	CAYNNNNRTG	3 cut(s)	812, 1116, 2867
SmlI	CTYRAG	3 cut(s)	205, 837, 965
SmoI	CTYRAG	3 cut(s)	205, 837, 965
SpeI	ACTAGT	1 cut(s)	334
SseBI	AGGCCT	1 cut(s)	1583
SspI	AATATT	2 cut(s)	2190, 2566
SspMI	CTAG	7 cut(s)	335, 486, 1176, 2093, 2132, 2298, 2675
SstI	GAGCTC	1 cut(s)	9
StuI	AGGCCT	1 cut(s)	1583
StyD4I	CCNGG	3 cut(s)	1342, 2001, 2164
StyI	CCWWGG	1 cut(s)	1512
TaaI	ACNGT	6 cut(s)	281, 820, 1092, 1573, 1874, 2772
TaiI	ACGT	3 cut(s)	138, 1796, 2718
TaqI	TCGA	5 cut(s)	319, 893, 913, 1876, 2932
TaqII	GACCGA	1 cut(s)	2745
TatI	WGTACW	6 cut(s)	681, 1151, 1349, 1417, 1885, 1925
TauI	GCSGC	4 cut(s)	130, 371, 413, 2597
TfiI	GAWTC	8 cut(s)	321, 1070, 1157, 1260, 2647, 2690, 3016, 3160
Tru1I	TTAA	7 cut(s)	612, 1001, 1226, 1860, 1979, 2148, 2208
Tru9I	TTAA	7 cut(s)	612, 1001, 1226, 1860, 1979, 2148, 2208
TscAI	CASTG	9 cut(s)	662, 1048, 1123, 1531, 1895, 2433, 2464, 2765, 3132
TseFI	GTSAC	5 cut(s)	200, 1039, 1538, 2455, 2609
TseI	GCWGC	7 cut(s)	407, 520, 794, 797, 1271, 2545, 2548
Tsp45I	GTSAC	5 cut(s)	200, 1039, 1538, 2455, 2609
TspGWI	ACGGA	3 cut(s)	37, 388, 995
TspRI	CASTG	9 cut(s)	662, 1048, 1123, 1531, 1895, 2433, 2464, 2765, 3132
Van91I	CCANNNNNTGG	1 cut(s)	2008
VpaK11BI	GGWCC	4 cut(s)	102, 982, 2669, 2950
XapI	RAATTY	4 cut(s)	614, 1164, 1777, 2921
XceI	RCATGY	2 cut(s)	392, 666
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XmiI	GTMKAC	2 cut(s)	833, 913
XmnI	GAANNNNTTC	2 cut(s)	1419, 2529
XspI	CTAG	7 cut(s)	335, 486, 1176, 2093, 2132, 2298, 2675
ZrmI	AGTACT	1 cut(s)	1419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.