Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

17883559 .. 17894640

Gene Structure 11082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG098400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAGCCAGAGGTTGACAGTGATGTAGAAACTGTGGCGAGCGAATGGCTTGGGAGCTCATCAGATGTCTTTTGTGACAACTACTTAGATGGGGGAGCACATAAAGGCCTGGCATCTGGTCTTAACCTTGATGGTTACTCTACCACAGTATGCTTTATTTTGGATGTGCCGAATTGTCTTGCTATGGGTAAGCAAGTGACTGAAGTTGTTAAAGAGAGTTCTGATATCATAGTCTTGGATGGCAATTTCGCGACTGTAGTAAAGGGTTTCAGATGGGGACGATCTATGCATGTAAAGGTTCTGAGAGTTATGCAGCAGCAACTTACAGCCAATAGTGTAGCAGTAACTATAAACTGCTTGGCGGCAGTATACTATCGTCACATTCCGCTCAATGCTGTGCAGTTTGTGTGGGTGAATGTTATCATATTTGGTCTTGGACCACTAGTATTGGCTACTGAATCTCCGGCTGATGACCTGATGAACGTACCCCCTATTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

166

Amino Acids

17.98

Weight (kDa)

4.49

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	388
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	1 cut(s)	251
AciI	CCGC	2 cut(s)	362, 386
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	1 cut(s)	486
AhlI	ACTAGT	1 cut(s)	442
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
Alw21I	GWGCWC	2 cut(s)	59, 100
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	313, 316
AspS9I	GGNCC	1 cut(s)	437
AsuHPI	GGTGA	1 cut(s)	424
AvaII	GGWCC	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	59
Bbv12I	GWGCWC	2 cut(s)	59, 100
BbvI	GCAGC	2 cut(s)	325, 328
BccI	CCATC	4 cut(s)	83, 125, 233, 267
BciT130I	CCWGG	1 cut(s)	110
BcuI	ACTAGT	1 cut(s)	442
BfaI	CTAG	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	255
BisI	GCNGC	3 cut(s)	314, 317, 363
BlsI	GCNGC	3 cut(s)	315, 318, 364
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
BseBI	CCWGG	1 cut(s)	110
BseGI	GGATG	2 cut(s)	169, 244
BseMII	CTCAG	1 cut(s)	293
BseXI	GCAGC	2 cut(s)	325, 328
BsgI	GTGCAG	1 cut(s)	419
Bsh1236I	CGCG	1 cut(s)	251
BshFI	GGCC	1 cut(s)	108
BsiHKAI	GWGCWC	2 cut(s)	59, 100
BsiSI	CCGG	1 cut(s)	464
BslFI	GGGAC	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	2 cut(s)	59, 100
Bsp143I	GATC	1 cut(s)	281
Bsp68I	TCGCGA	1 cut(s)	251
BspACI	CCGC	2 cut(s)	362, 386
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	294
BspFNI	CGCG	1 cut(s)	251
BspLI	GGNNCC	1 cut(s)	6
BsrBI	CCGCTC	1 cut(s)	388
BssMI	GATC	1 cut(s)	281
BssNAI	GTATAC	1 cut(s)	370
Bst1107I	GTATAC	1 cut(s)	370
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	4 cut(s)	20, 34, 148, 256
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	2 cut(s)	85, 302
BstF5I	GGATG	2 cut(s)	169, 244
BstFNI	CGCG	1 cut(s)	251
BstKTI	GATC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	281
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	255
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	2 cut(s)	325, 328
BstZ17I	GTATAC	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	169, 244
BtsIMutI	CAGTG	1 cut(s)	25
BtuMI	TCGCGA	1 cut(s)	251
Cac8I	GCNNGC	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	437
Csp6I	GTAC	1 cut(s)	485
CspCI	CAANNNNNGTGG	2 cut(s)	429, 464
CviAII	CATG	1 cut(s)	290
CviJI	RGCY	7 cut(s)	7, 49, 57, 108, 329, 452, 467
CviKI_1	RGCY	7 cut(s)	7, 49, 57, 108, 329, 452, 467
CviQI	GTAC	1 cut(s)	485
DdeI	CTNAG	2 cut(s)	85, 302
DpnI	GATC	1 cut(s)	283
DpnII	GATC	1 cut(s)	281
Ecl136II	GAGCTC	1 cut(s)	57
Eco147I	AGGCCT	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	59
Eco32I	GATATC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	437
Eco53kI	GAGCTC	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	108
EcoRV	GATATC	1 cut(s)	226
EcoT22I	ATGCAT	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	59
FaeI	CATG	1 cut(s)	293
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	3 cut(s)	314, 317, 363
FokI	GGATG	2 cut(s)	176, 251
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	3 cut(s)	314, 317, 363
FspBI	CTAG	1 cut(s)	443
GluI	GCNGC	3 cut(s)	314, 317, 363
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	464
Hin1II	CATG	1 cut(s)	293
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HinfI	GANTC	1 cut(s)	458
HpaII	CCGG	1 cut(s)	464
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	2 cut(s)	16, 370
Hpy188I	TCNGA	4 cut(s)	64, 223, 272, 303
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	2 cut(s)	16, 370
HpyCH4III	ACNGT	4 cut(s)	20, 34, 148, 256
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	3 cut(s)	289, 313, 400
HpyF3I	CTNAG	2 cut(s)	85, 302
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	1 cut(s)	293
Kzo9I	GATC	1 cut(s)	281
LmnI	GCTCC	3 cut(s)	4, 54, 95
LpnPI	CCDG	6 cut(s)	21, 95, 102, 122, 477, 488
Lsp1109I	GCAGC	2 cut(s)	325, 328
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	5 cut(s)	74, 134, 196, 343, 377
MalI	GATC	1 cut(s)	283
MbiI	CCGCTC	1 cut(s)	388
MboI	GATC	1 cut(s)	281
MhlI	GDGCHC	2 cut(s)	59, 100
MluCI	AATT	2 cut(s)	172, 244
MnlI	CCTC	1 cut(s)	4
Mph1103I	ATGCAT	1 cut(s)	291
MseI	TTAA	2 cut(s)	123, 210
MspI	CCGG	1 cut(s)	464
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	251
NdeII	GATC	1 cut(s)	281
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	3 cut(s)	74, 196, 377
NruI	TCGCGA	1 cut(s)	251
NsiI	ATGCAT	1 cut(s)	291
NspI	RCATGY	1 cut(s)	293
PceI	AGGCCT	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	458
PkrI	GCNGC	3 cut(s)	315, 318, 364
Psp124BI	GAGCTC	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	437
RruI	TCGCGA	1 cut(s)	251
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
SacI	GAGCTC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	123, 210
SatI	GCNGC	3 cut(s)	314, 317, 363
Sau3AI	GATC	1 cut(s)	281
Sau96I	GGNCC	1 cut(s)	437
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	59, 100
SetI	ASST	6 cut(s)	15, 59, 129, 300, 477, 486
SfaNI	GCATC	1 cut(s)	122
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	437
SpeI	ACTAGT	1 cut(s)	442
Sse9I	AATT	2 cut(s)	172, 244
SseBI	AGGCCT	1 cut(s)	108
SsiI	CCGC	2 cut(s)	362, 386
SspMI	CTAG	1 cut(s)	443
SstI	GAGCTC	1 cut(s)	59
StuI	AGGCCT	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	4 cut(s)	20, 34, 148, 256
TaiI	ACGT	1 cut(s)	486
TasI	AATT	2 cut(s)	172, 244
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	2 cut(s)	123, 210
Tru9I	TTAA	2 cut(s)	123, 210
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	3 cut(s)	74, 196, 377
TseI	GCWGC	2 cut(s)	313, 316
Tsp45I	GTSAC	3 cut(s)	74, 196, 377
TspDTI	ATGAA	1 cut(s)	494
TspRI	CASTG	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	437
XceI	RCATGY	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	1 cut(s)	443
Zsp2I	ATGCAT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.