Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

12261444 .. 12288010

Gene Structure 26567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG081800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1704 bp

ATGACTGTTTCTGAGGCCTATGCTGGTGAGAAGAAAATCAATTTTGCTGACAGCACAAGCAACTTGTCTCCGATACTATCGTCCTTACTTGTTGAAGGAATTGCTCAGAATACGAGTGGCAGTCTATCTGTGCTTGGGAGTGGTGATGTTCAGGCTTCCGGATCACCAATTGATAGGGCAATTCTGCATTGGGGAGTCAAGCTGGGAATGAATTTTGATGATATAATGTCTCAGTCTCCAGTTATGCAAGTTTTGCCATTCAGTTCAGAGAAAAAACGAGGTGGTGTTGCACTTAATCTGACACATGGTCGAGTTCATGTACACTGGAAAGGGGCAGCTGAAGGAGTCTTGGCCTCATGCACAAGATACATTGGGGCTAATGATCAGGTTTTACCAATGGATGATGAGAAGTTAACATTTTTTCAAAAAGCTATCGAGGATATGGCTTCTGGAGGTTTGCATTGCGTTGCTATTGCATATAGATCACTTGAATTGGAAAATGTTCTAATCAATAGTAATGGACAACTAGCGCAGTGGGAACTACCTGAGGATGACCTCATTTTACTAGCTGTTGTTGGTATGAAGGATGATAGTCAACCGGGGATCAAGGACTCGGTGGAAATATTGCAAAGAGCTGGCATTAAGGTACGCCTTGTTACGCATGACAATCCTCAAACTGCAAAAGCAATTGCTAAGGAATGTAGCATACTTGCTTCTGATGGGTCAGATGTTAGTGAGGAAAATCTTATTGAAGGAAAAGTGTTCCGAGAACTTTCTGATAGTCAGAGAGAAGGATTAGCAGAGAAGATTTTGGTAATGGCACGGTCTTCCCCCAATGACAAGCTTTTGCTTGTGCGAGCACTGCAGAAAAGAGGAAAGATTGTTGCTGTCACTGGATATGTCAGTAATGATGCTCATGCATTACATGAGGCCGACATTGGTCTTGCTATGGGTATTCAAGGGACTGAAGTTGTTAAAGAGAGTTCAGATATCATAATCTTGGATGACAATTTTGCTACAGTAGCCAAGTGTTTTAGATGGGGACGATCGATGCATGAAAAGGTTCTGAAAGTTATGCAGCAGCAACTTACAGTCAATATTGTAGCAGTAACCATAAACTGCATGGCGGCAGTTTACTATCGTTACATCCCGCTCAATGCTGTGCAGTTTGTGTGGGTGAATCTTATCATATTTGGTCTTGGACCACTAGCACTGGCTACTGAATCTCCGGCTGATCACCTGATGAACGTACCCCCTATTGACCGAGGACAAACTCTTATAAAATATATTCAGTGGAAGAGACTGTTGACACAGGTTCTGTACCAAATTATTGCCCTGCTTGTCATCAATTTTCAAGGAGGGAGTTTACTGAAAAATGATACCAGAGACCATGCCACAAAAATGAAGAATACAATGATATTCAACACATTTGTTGTTTGTCAGATTTCCATTGAATTCGGAGTTCGAAAGACTGGTATAGTGGACCATCCTTTGAAATGGATTACTGCTAACTCTGTGTTTCTGGGAATAGTTGGAATAATTCTTTTGATTCAGTTTATCATCATTGAGTTTCTTGGAAAGGCGTTTTTCTTAGTCAGGCTTGACTGGAAAGAGTGGGAGTTTTCGCTGACTCTTGGCATTGTCGAGTTGTTGTTTGCACTGCTTCTATTTCTGAAGGACCTGGCACAAAGGAATCTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

567

Amino Acids

62.49

Weight (kDa)

5.99

Isoelectric Point (pI)

32.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase	PF13246	30 - 199	9.2e-28	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	187 - 312	1.7e-06	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	383 - 553	3.3e-26	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1280
AccBSI	CCGCTC	1 cut(s)	1153
AccIII	TCCGGA	1 cut(s)	158
AciI	CCGC	2 cut(s)	1127, 1151
AclWI	GGATC	2 cut(s)	169, 611
AcsI	RAATTY	2 cut(s)	211, 1454
AcuI	CTGAAG	3 cut(s)	360, 987, 1694
AfaI	GTAC	4 cut(s)	321, 648, 1251, 1322
AgsI	TTSAA	9 cut(s)	95, 425, 491, 752, 959, 1355, 1423, 1454, 1495
AhdI	GACNNNNNGTC	1 cut(s)	306
AjnI	CCWGG	1 cut(s)	1680
AluBI	AGCT	6 cut(s)	202, 338, 431, 569, 635, 844
AluI	AGCT	6 cut(s)	202, 338, 431, 569, 635, 844
Alw21I	GWGCWC	1 cut(s)	862
Alw26I	GTCTC	5 cut(s)	72, 234, 240, 1294, 1380
AlwI	GGATC	2 cut(s)	169, 611
AlwNI	CAGNNNCTG	1 cut(s)	1318
Aor13HI	TCCGGA	1 cut(s)	158
AoxI	GGCC	3 cut(s)	15, 351, 930
ApeKI	GCWGC	3 cut(s)	335, 1078, 1081
ApoI	RAATTY	2 cut(s)	211, 1454
Asp700I	GAANNNNTTC	2 cut(s)	501, 1062
AspLEI	GCGC	1 cut(s)	532
AspS9I	GGNCC	3 cut(s)	1202, 1483, 1678
AsuC2I	CCSGG	1 cut(s)	600
AsuHPI	GGTGA	5 cut(s)	38, 155, 156, 1189, 1229
AsuII	TTCGAA	1 cut(s)	1465
AvaII	GGWCC	3 cut(s)	1202, 1483, 1678
AxyI	CCTNAGG	1 cut(s)	546
BaeI	ACNNNNGTAYC	2 cut(s)	65, 98
BbsI	GAAGAC	1 cut(s)	819
Bbv12I	GWGCWC	1 cut(s)	862
BbvI	GCAGC	3 cut(s)	347, 1090, 1093
BccI	CCATC	3 cut(s)	713, 1032, 1494
BciT130I	CCWGG	1 cut(s)	1682
BclI	TGATCA	2 cut(s)	382, 1234
BcnI	CCSGG	1 cut(s)	600
BcoDI	GTCTC	5 cut(s)	72, 234, 240, 1294, 1380
BfaI	CTAG	3 cut(s)	527, 566, 1208
BfmI	CTRYAG	2 cut(s)	863, 1017
BisI	GCNGC	4 cut(s)	336, 1079, 1082, 1128
BlsI	GCNGC	4 cut(s)	337, 1080, 1083, 1129
Bme1390I	CCNGG	2 cut(s)	600, 1682
Bme18I	GGWCC	3 cut(s)	1202, 1483, 1678
BmeRI	GACNNNNNGTC	1 cut(s)	306
BmgT120I	GGNCC	3 cut(s)	1202, 1483, 1678
BmrFI	CCNGG	2 cut(s)	600, 1682
BmsI	GCATC	2 cut(s)	901, 1041
BoxI	GACNNNNGTC	1 cut(s)	939
BpiI	GAAGAC	1 cut(s)	819
BpmI	CTGGAG	2 cut(s)	222, 471
Bpu10I	CCTNAGC	1 cut(s)	693
Bpu14I	TTCGAA	1 cut(s)	1465
BpuMI	CCSGG	1 cut(s)	600
Bsa29I	ATCGAT	1 cut(s)	1049
BsaI	GGTCTC	1 cut(s)	1380
BsaJI	CCNNGG	2 cut(s)	599, 1264
BsaWI	WCCGGW	1 cut(s)	158
BsaXI	ACNNNNNCTCC	2 cut(s)	1210, 1240
Bse1I	ACTGG	6 cut(s)	239, 329, 898, 1218, 1477, 1610
Bse21I	CCTNAGG	1 cut(s)	546
Bse3DI	GCAATG	1 cut(s)	460
BseAI	TCCGGA	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	1682
BseCI	ATCGAT	1 cut(s)	1049
BseDI	CCNNGG	2 cut(s)	599, 1264
BseGI	GGATG	6 cut(s)	406, 556, 592, 1009, 1146, 1486
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	3 cut(s)	119, 245, 537
BseNI	ACTGG	6 cut(s)	239, 329, 898, 1218, 1477, 1610
BseXI	GCAGC	3 cut(s)	347, 1090, 1093
BseYI	CCCAGC	1 cut(s)	202
BsgI	GTGCAG	1 cut(s)	1184
Bsh1285I	CGRYCG	1 cut(s)	1049
BshFI	GGCC	3 cut(s)	17, 353, 932
BshVI	ATCGAT	1 cut(s)	1049
BsiEI	CGRYCG	1 cut(s)	1049
BsiHKAI	GWGCWC	1 cut(s)	862
BsiSI	CCGG	3 cut(s)	159, 599, 1229
BslFI	GGGAC	2 cut(s)	976, 1056
BsmAI	GTCTC	5 cut(s)	72, 234, 240, 1294, 1380
BsmFI	GGGAC	2 cut(s)	976, 1056
BsnI	GGCC	3 cut(s)	17, 353, 932
Bso31I	GGTCTC	1 cut(s)	1380
Bsp119I	TTCGAA	1 cut(s)	1465
Bsp1286I	GDGCHC	1 cut(s)	862
Bsp13I	TCCGGA	1 cut(s)	158
Bsp1407I	TGTACA	1 cut(s)	319
Bsp143I	GATC	6 cut(s)	161, 382, 482, 603, 1046, 1234
BspACI	CCGC	2 cut(s)	1127, 1151
BspANI	GGCC	3 cut(s)	17, 353, 932
BspCNI	CTCAG	4 cut(s)	4, 118, 244, 538
BspDI	ATCGAT	1 cut(s)	1049
BspEI	TCCGGA	1 cut(s)	158
BspMAI	CTGCAG	1 cut(s)	867
BspPI	GGATC	2 cut(s)	169, 611
BspT104I	TTCGAA	1 cut(s)	1465
BspTNI	GGTCTC	1 cut(s)	1380
BsrBI	CCGCTC	1 cut(s)	1153
BsrDI	GCAATG	1 cut(s)	460
BsrGI	TGTACA	1 cut(s)	319
BsrI	ACTGG	6 cut(s)	239, 329, 898, 1218, 1477, 1610
BssECI	CCNNGG	2 cut(s)	599, 1264
BssMI	GATC	6 cut(s)	161, 382, 482, 603, 1046, 1234
Bst2UI	CCWGG	1 cut(s)	1682
Bst4CI	ACNGT	5 cut(s)	7, 825, 1021, 1093, 1305
Bst6I	CTCTTC	1 cut(s)	1292
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstAUI	TGTACA	1 cut(s)	319
BstBI	TTCGAA	1 cut(s)	1465
BstC8I	GCNNGC	2 cut(s)	637, 858
BstDEI	CTNAG	6 cut(s)	12, 105, 231, 546, 693, 1591
BstF5I	GGATG	6 cut(s)	406, 556, 592, 1009, 1146, 1486
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	6 cut(s)	164, 385, 485, 606, 1049, 1237
BstMAI	GTCTC	5 cut(s)	72, 234, 240, 1294, 1380
BstMBI	GATC	6 cut(s)	161, 382, 482, 603, 1046, 1234
BstMCI	CGRYCG	1 cut(s)	1049
BstMWI	GCNNNNNNNGC	3 cut(s)	253, 862, 1022
BstNI	CCWGG	1 cut(s)	1682
BstPAI	GACNNNNGTC	1 cut(s)	939
BstSCI	CCNGG	2 cut(s)	598, 1680
BstSFI	CTRYAG	2 cut(s)	863, 1017
BstV1I	GCAGC	3 cut(s)	347, 1090, 1093
BstV2I	GAAGAC	1 cut(s)	819
Bsu15I	ATCGAT	1 cut(s)	1049
Bsu36I	CCTNAGG	1 cut(s)	546
BsuRI	GGCC	3 cut(s)	17, 353, 932
BsuTUI	ATCGAT	1 cut(s)	1049
BtsCI	GGATG	6 cut(s)	406, 556, 592, 1009, 1146, 1486
BtsI	GCAGTG	3 cut(s)	539, 860, 1658
BtsIMutI	CAGTG	7 cut(s)	322, 539, 860, 891, 1211, 1298, 1658
Cac8I	GCNNGC	2 cut(s)	637, 858
CaiI	CAGNNNCTG	1 cut(s)	1318
CfoI	GCGC	1 cut(s)	532
Cfr13I	GGNCC	3 cut(s)	1202, 1483, 1678
ClaI	ATCGAT	1 cut(s)	1049
Csp6I	GTAC	4 cut(s)	320, 647, 1250, 1321
CviAII	CATG	9 cut(s)	305, 317, 357, 662, 917, 926, 1055, 1123, 1391
CviQI	GTAC	4 cut(s)	320, 647, 1250, 1321
DdeI	CTNAG	6 cut(s)	12, 105, 231, 546, 693, 1591
DpnI	GATC	6 cut(s)	163, 384, 484, 605, 1048, 1236
DpnII	GATC	6 cut(s)	161, 382, 482, 603, 1046, 1234
DriI	GACNNNNNGTC	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	1292
Eam1105I	GACNNNNNGTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	1292
Eco147I	AGGCCT	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	1380
Eco32I	GATATC	1 cut(s)	991
Eco47I	GGWCC	3 cut(s)	1202, 1483, 1678
Eco57I	CTGAAG	3 cut(s)	360, 987, 1694
Eco81I	CCTNAGG	1 cut(s)	546
EcoO109I	RGGNCCY	1 cut(s)	1678
EcoRI	GAATTC	1 cut(s)	1454
EcoRII	CCWGG	1 cut(s)	1680
EcoRV	GATATC	1 cut(s)	991
EcoT22I	ATGCAT	2 cut(s)	922, 1056
FaeI	CATG	9 cut(s)	308, 320, 360, 665, 920, 929, 1058, 1126, 1394
FaqI	GGGAC	2 cut(s)	976, 1056
FatI	CATG	9 cut(s)	304, 316, 356, 661, 916, 925, 1054, 1122, 1390
FauI	CCCGC	1 cut(s)	1158
FbaI	TGATCA	2 cut(s)	382, 1234
Fnu4HI	GCNGC	4 cut(s)	336, 1079, 1082, 1128
FokI	GGATG	6 cut(s)	413, 563, 599, 1016, 1133, 1473
Fsp4HI	GCNGC	4 cut(s)	336, 1079, 1082, 1128
FspBI	CTAG	3 cut(s)	527, 566, 1208
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	4 cut(s)	336, 1079, 1082, 1128
GsaI	CCCAGC	1 cut(s)	206
GsuI	CTGGAG	2 cut(s)	222, 471
HaeIII	GGCC	3 cut(s)	17, 353, 932
HapII	CCGG	3 cut(s)	159, 599, 1229
HhaI	GCGC	1 cut(s)	532
Hin1II	CATG	9 cut(s)	308, 320, 360, 665, 920, 929, 1058, 1126, 1394
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HincII	GTYRAC	3 cut(s)	414, 596, 1308
HindII	GTYRAC	3 cut(s)	414, 596, 1308
HindIII	AAGCTT	1 cut(s)	842
HinfI	GANTC	8 cut(s)	195, 345, 611, 1180, 1223, 1549, 1630, 1693
HpaI	GTTAAC	1 cut(s)	414
HpaII	CCGG	3 cut(s)	159, 599, 1229
HphI	GGTGA	5 cut(s)	38, 155, 156, 1189, 1229
Hpy166II	GTNNAC	7 cut(s)	322, 414, 596, 1135, 1308, 1367, 1483
Hpy188III	TCNNGA	2 cut(s)	159, 450
Hpy8I	GTNNAC	7 cut(s)	322, 414, 596, 1135, 1308, 1367, 1483
HpyAV	CCTTC	6 cut(s)	89, 335, 577, 746, 785, 1669
HpyCH4III	ACNGT	5 cut(s)	7, 825, 1021, 1093, 1305
HpyCH4IV	ACGT	1 cut(s)	1248
HpyF10VI	GCNNNNNNNGC	3 cut(s)	253, 862, 1022
HpyF3I	CTNAG	6 cut(s)	12, 105, 231, 546, 693, 1591
HpySE526I	ACGT	1 cut(s)	1248
Hsp92II	CATG	9 cut(s)	308, 320, 360, 665, 920, 929, 1058, 1126, 1394
HspAI	GCGC	1 cut(s)	530
Kpn2I	TCCGGA	1 cut(s)	158
Ksp22I	TGATCA	2 cut(s)	382, 1234
KspAI	GTTAAC	1 cut(s)	414
Kzo9I	GATC	6 cut(s)	161, 382, 482, 603, 1046, 1234
Lsp1109I	GCAGC	3 cut(s)	347, 1090, 1093
LweI	GCATC	2 cut(s)	901, 1041
MaeI	CTAG	3 cut(s)	527, 566, 1208
MaeII	ACGT	1 cut(s)	1248
MaeIII	GTNAC	4 cut(s)	655, 889, 1108, 1142
MalI	GATC	6 cut(s)	163, 384, 484, 605, 1048, 1236
MbiI	CCGCTC	1 cut(s)	1153
MboI	GATC	6 cut(s)	161, 382, 482, 603, 1046, 1234
MboII	GAAGA	5 cut(s)	43, 817, 819, 1309, 1417
MfeI	CAATTG	2 cut(s)	168, 687
MhlI	GDGCHC	1 cut(s)	862
MlyI	GAGTC	4 cut(s)	204, 354, 605, 1624
MmeI	TCCRAC	1 cut(s)	1513
Mph1103I	ATGCAT	2 cut(s)	922, 1056
MroI	TCCGGA	1 cut(s)	158
MroXI	GAANNNNTTC	2 cut(s)	501, 1062
MseI	TTAA	6 cut(s)	294, 413, 642, 975, 1698, 1702
MslI	CAYNNNNRTG	1 cut(s)	1400
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	3 cut(s)	159, 599, 1229
MspR9I	CCNGG	2 cut(s)	600, 1682
MunI	CAATTG	2 cut(s)	168, 687
MvaI	CCWGG	1 cut(s)	1682
MwoI	GCNNNNNNNGC	3 cut(s)	253, 862, 1022
NciI	CCSGG	1 cut(s)	600
NdeII	GATC	6 cut(s)	161, 382, 482, 603, 1046, 1234
NlaIII	CATG	9 cut(s)	308, 320, 360, 665, 920, 929, 1058, 1126, 1394
NmuCI	GTSAC	1 cut(s)	889
NsiI	ATGCAT	2 cut(s)	922, 1056
NspV	TTCGAA	1 cut(s)	1465
PacI	TTAATTAA	1 cut(s)	1702
PceI	AGGCCT	1 cut(s)	17
PdmI	GAANNNNTTC	2 cut(s)	501, 1062
PfeI	GAWTC	4 cut(s)	1180, 1223, 1549, 1693
PkrI	GCNGC	4 cut(s)	337, 1080, 1083, 1129
Ple19I	CGATCG	1 cut(s)	1049
PleI	GAGTC	4 cut(s)	203, 353, 605, 1624
PpsI	GAGTC	4 cut(s)	203, 353, 605, 1624
PpuMI	RGGWCCY	1 cut(s)	1678
PshAI	GACNNNNGTC	1 cut(s)	939
PsiI	TTATAA	1 cut(s)	1280
Psp5II	RGGWCCY	1 cut(s)	1678
Psp6I	CCWGG	1 cut(s)	1680
PspFI	CCCAGC	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	1680
PspPI	GGNCC	3 cut(s)	1202, 1483, 1678
PspPPI	RGGWCCY	1 cut(s)	1678
PstI	CTGCAG	1 cut(s)	867
PstNI	CAGNNNCTG	1 cut(s)	1318
PvuI	CGATCG	1 cut(s)	1049
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	4 cut(s)	321, 648, 1251, 1322
RsaNI	GTAC	4 cut(s)	320, 647, 1250, 1321
RseI	CAYNNNNRTG	1 cut(s)	1400
SaqAI	TTAA	6 cut(s)	294, 413, 642, 975, 1698, 1702
SatI	GCNGC	4 cut(s)	336, 1079, 1082, 1128
Sau3AI	GATC	6 cut(s)	161, 382, 482, 603, 1046, 1234
Sau96I	GGNCC	3 cut(s)	1202, 1483, 1678
SchI	GAGTC	4 cut(s)	204, 354, 605, 1624
ScrFI	CCNGG	2 cut(s)	600, 1682
SduI	GDGCHC	1 cut(s)	862
SfaNI	GCATC	2 cut(s)	901, 1041
SfcI	CTRYAG	2 cut(s)	863, 1017
SfuI	TTCGAA	1 cut(s)	1465
SinI	GGWCC	3 cut(s)	1202, 1483, 1678
SmiMI	CAYNNNNRTG	1 cut(s)	1400
SseBI	AGGCCT	1 cut(s)	17
SsiI	CCGC	2 cut(s)	1127, 1151
SspI	AATATT	2 cut(s)	624, 1099
SspMI	CTAG	3 cut(s)	527, 566, 1208
StuI	AGGCCT	1 cut(s)	17
StyD4I	CCNGG	2 cut(s)	598, 1680
TaaI	ACNGT	5 cut(s)	7, 825, 1021, 1093, 1305
TaiI	ACGT	1 cut(s)	1251
TaqI	TCGA	5 cut(s)	310, 435, 1049, 1465, 1644
TaqII	GACCGA	1 cut(s)	1278
TatI	WGTACW	1 cut(s)	319
TauI	GCSGC	1 cut(s)	1130
TfiI	GAWTC	4 cut(s)	1180, 1223, 1549, 1693
Tru1I	TTAA	6 cut(s)	294, 413, 642, 975, 1698, 1702
Tru9I	TTAA	6 cut(s)	294, 413, 642, 975, 1698, 1702
TscAI	CASTG	7 cut(s)	329, 539, 867, 898, 1218, 1298, 1665
TseFI	GTSAC	1 cut(s)	889
TseI	GCWGC	3 cut(s)	335, 1078, 1081
Tsp45I	GTSAC	1 cut(s)	889
TspDTI	ATGAA	6 cut(s)	224, 305, 596, 1071, 1259, 1418
TspRI	CASTG	7 cut(s)	329, 539, 867, 898, 1218, 1298, 1665
VpaK11BI	GGWCC	3 cut(s)	1202, 1483, 1678
XapI	RAATTY	2 cut(s)	211, 1454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1120
XmnI	GAANNNNTTC	2 cut(s)	501, 1062
XspI	CTAG	3 cut(s)	527, 566, 1208
Zsp2I	ATGCAT	2 cut(s)	922, 1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.