Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

17832552 .. 17861582

Gene Structure 29031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG098200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3078 bp

ATGAATCACTCAATTGGGTTGCCTTATAACCCAAGCAATGACTTGGAGACCGGTCTGAAGGAGGATCATGTTGAGCGCATGAACCGGTGGACGCAAGCGAAACTATATCTGAAAGCATTGCACCGATTCCGTCACACACTAGTCCTGAAAAAGGCAGAAGAAAAGAAGCAGGCAGCAAAGAAACTACTTAGAGTACATACCCAAGCCCTACGAGCTGCGGCTATCTTCAAAGAAGTTGCAGATCAAGTGAAAGGGTCTGGTGATTATTTTCCAATTGAACCAGATGAACTTGCTCGTTTGACGAGGAGTAGTGATGTTGATGCTCTGCAGCAATATGGGGGGAAGGAAGGCTTGGCAGATTTACTGAAAACAGATTTAGACAAGGGAATTGATGGGGATGATTTACTAAAGCGGACAATTAAATTTGGATCAAACATATACCCTCCAAAAACAGCAATGAGCCACTGGACATGTCTTCGGGAAGCTCTGTATAATTTTACTCGGATCGTTTTGGTGATTGCTTTTATGGGTTCTGTTGTGATGGGTATTCTGGAAGAGACTAAAAAGCTGGGATGGCACGATGTGTTCAGCGTTGCTATTGCAGCTGCCATGTTCATTCTTATCACAGTCTTATCTGAGTATATTCAAGCTCGTCAGTTCCAGCATATGATCATCAGGGAGGAAATCAGAAACATAAAATTGAAGGTTATTAGAGCTGGTCGACAAGTTGTGGTTTCTAATTGTGATATTGTTGTTGGTGATGTTCTACCTCTTAAGACTGGTGATGAGGTCCCTGCTGATGGCATTTTAATCCGTGGTCGCTCACTTGCAATTGATAAGAGTAGAGTCACTGGAGAGAGCAAGATTTTTCACAAGGATTCAAGGAATCCATTTCTACGATCTGGCTGGAAAGTAGCACATGGCAGTGCTACTATGCTGGTAACTGGGGTTGGGAAATGTACTGAATCAGGAATTCTCAGGGCTAACACTTATTCAAAAGACACCGAGAATAAAACCCCCTTGCAGGTGCTTTTAAAGGAGGCTGCTACTTTCATGGGTGCTGTCGGATTCATGGGTGCTGCCATTGTTGCATATGTTGTTTGGTTCAGAGACTTCTTTACTGGTGATAATTCAAATGGAAGTCCTGAACCTGGAAGTACACTTGAAGAAGTGATTAGAATTAGTACCATTGCAGTTGCCATTTTTGTCGTTGCATTACCTGAAGTGCTTCCTTCAGCTTTCAACATAAGCCGTCTCAGCACAATGAAAAAGATGAAGGCAGACAATGCCTTGGTGCGGAGGCCAGCTGTATGTGAAACCATGGCCTTATGCAGTGATGCACTTTGTGACAAGACCGGAATAACTTTGAACCAGATGACTGTTTCTGAGGCCTATGCTGGTGAGAAGAAAATCAATTTTGCTAACAGCACAAGCAACTTGTCTCCGATACTATCGTCCTTACTTGTTGAAGGAATTACTCACAATACGAGTGGCAGTCTATCTGTGCTTGGGAGTGGTGATGTTCAGGCTTCTGGATCACCAATTGATAGGGCAATTCTGCATTGGGGAGTCAAGCTGGGAATGAATTTTGATGATATAATGTCTCAGTCTCCAGTTATGCAAGTTTTGCCATTCAGTTCAGAGAAAAAACGAGGTGGTGTTGCACTTAATCTGACACATGGTCGAGTTCATGTACACTGGAAAGGGGCAGCAGAAGGAGTCTTGGCCTCATGTACAAGATACATTGGGGCTAATGATCAGGTTTTACCAATGGATGAAGAGAAGTTAACATTTTTTCAAAAAGCTATCGAGGATATGGCTTCTGGAGGTTTGCATTGCGTTGCTGTTGCATATAGATCACTTGAATTGGAAAATGTTCTAATCAATAGTAATGGACAACTAGCGCAGTGGGAACTACCTGAGGATGACCTCATTTTACTAGCTATTGTTGGTATGAAGGATGATAGTCAACCGGGGATCAAGGACTCGGTGGAAATATTGCAAAGAGCTGGCATTAAGGTACGCCTTGTTACGCATGACAATCCTCAAACTGCAAAAGCAATTGCTAAGGAATGTAGCATACTTGCTTCTGATGGGTCAGATGTTAGTGAGGAAAATCTTATTGAAGGAAAAGTGTTCCGAGAACTTTCTGATAGTCAGAGAGAAGGATTAGCAGAGAAGATTTTGGTAATGTCACGGTCTTCCCCCAATGACAAGCTTTTGCTTGTGCGAGCACTGCAGAAAAGAGGAAAGATTGTTGCTGTCACTGGATATGCCAGTAATGATGCTCATGCACTACATGAGGCCGACATTGGTCTTGCTATGGGTATTCAAAGGACTGAAGTTGTTAAAGAGAGTTCAGATATCATAATCTTGGATGACAATTTTGCTACAGTAGCCAAGTGTTTTAGATGGGGACGATCGATGCATGAAAAGGTTCTGAAAGTTATGCAGCAGCAACTTACAGCCAATATTGTAGCAGTAACCATAAACTGCATGGCGGCAGTTTACTATCGTTACATCCCGCTCAATGCTGTGCAGTTTGTGTGGGTGAATCTTATCATATTTGGTCTTGGACCACTAGCACTGGCTACTGAATCTCCGGCTGATCACCTGATGAACGTACCACCTATTGACCGAGGACAAACTCTTATAAAATATATTCAGTGGAAGAGACTGTTGACACAGGTTCTGTACCAAATTATTGCCCTGCTTGTCATCAATTTTGAAGGAGGGAGTTTACTGCAAAATTATACCAGAGACCATGCCACAAAAGTGAAGAATACAATGATATTCAACACATTTGTTGTTTGTCAGATTTCCATTGAATTCGGAGTTCGAAAGACTGGTATAGTGAACCATCCTTTGAAATGGATTACTGCTAACTCTGTGTTTCTGGGAATAGTTGGAATAATTCTTTTGATTCAGTTTATCATCATTGAGTTTCTTGGAAAGGCGTTTTTCATAGTCAGGCTTGACTGGAAAGAGTGGCAGTTTTCGCTGACTCTTGGCATTGTCGAGTTGTTGTTTGCACTGCTTCTATTTCTGAAGCACCTGGTACAAAGGAATCATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1025

Amino Acids

113.37

Weight (kDa)

8.56

Isoelectric Point (pI)

35.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	112 - 174	1.2e-07	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	233 - 324	1.2e-15	P-type ATPase actuator domain
Cation_ATPase	PF13246	492 - 657	2.4e-27	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	646 - 770	1.3e-06	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	841 - 1011	2.9e-25	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	27, 2654
AarI	CACCTGC	1 cut(s)	1015
Acc36I	ACCTGC	1 cut(s)	1015
AccBSI	CCGCTC	1 cut(s)	2527
AccI	GTMKAC	1 cut(s)	721
AciI	CCGC	5 cut(s)	218, 412, 1297, 2501, 2525
AclWI	GGATC	5 cut(s)	72, 436, 512, 1543, 1985
AcsI	RAATTY	4 cut(s)	422, 972, 1585, 2828
AcuI	CTGAAG	5 cut(s)	77, 1218, 1242, 2361, 3068
AdeI	CACNNNGTG	2 cut(s)	583, 1346
AfiI	CCNNNNNNNGG	5 cut(s)	151, 800, 1024, 1151, 1296
AflII	CTTAAG	1 cut(s)	773
AflIII	ACRYGT	1 cut(s)	470
AgeI	ACCGGT	2 cut(s)	50, 84
AhdI	GACNNNNNGTC	1 cut(s)	1680
AhlI	ACTAGT	1 cut(s)	139
AjnI	CCWGG	2 cut(s)	1150, 3054
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AleI	CACNNNNGTG	1 cut(s)	2774
Alw21I	GWGCWC	1 cut(s)	2236
Alw26I	GTCTC	9 cut(s)	41, 551, 1104, 1259, 1446, 1608, 1614, 2668, 2754
AlwI	GGATC	5 cut(s)	72, 436, 512, 1543, 1985
AlwNI	CAGNNNCTG	1 cut(s)	2692
AoxI	GGCC	5 cut(s)	1301, 1323, 1389, 1725, 2304
ApoI	RAATTY	4 cut(s)	422, 972, 1585, 2828
AsiGI	ACCGGT	2 cut(s)	50, 84
Asp700I	GAANNNNTTC	3 cut(s)	1227, 1875, 2436
AspLEI	GCGC	2 cut(s)	78, 1906
AspS9I	GGNCC	2 cut(s)	790, 2576
AsuC2I	CCSGG	1 cut(s)	1974
AsuII	TTCGAA	1 cut(s)	2839
AvaII	GGWCC	2 cut(s)	790, 2576
AxyI	CCTNAGG	1 cut(s)	1920
BaeI	ACNNNNGTAYC	2 cut(s)	1439, 1472
BbsI	GAAGAC	2 cut(s)	467, 2193
Bbv12I	GWGCWC	1 cut(s)	2236
BccI	CCATC	7 cut(s)	386, 535, 567, 794, 2087, 2406, 2868
BceAI	ACGGC	1 cut(s)	1236
BciT130I	CCWGG	2 cut(s)	1152, 3056
BclI	TGATCA	3 cut(s)	669, 1756, 2608
BcnI	CCSGG	1 cut(s)	1974
BcoDI	GTCTC	9 cut(s)	41, 551, 1104, 1259, 1446, 1608, 1614, 2668, 2754
BcuI	ACTAGT	1 cut(s)	139
BfaI	CTAG	4 cut(s)	140, 1901, 1940, 2582
BfmI	CTRYAG	3 cut(s)	326, 2237, 2391
BfrI	CTTAAG	1 cut(s)	773
BfuAI	ACCTGC	1 cut(s)	1015
Bme1390I	CCNGG	3 cut(s)	1152, 1974, 3056
Bme18I	GGWCC	2 cut(s)	790, 2576
BmeRI	GACNNNNNGTC	1 cut(s)	1680
BmgT120I	GGNCC	2 cut(s)	790, 2576
BmiI	GGNNCC	1 cut(s)	792
BmrFI	CCNGG	3 cut(s)	1152, 1974, 3056
BmrI	ACTGGG	1 cut(s)	954
BmsI	GCATC	4 cut(s)	310, 1327, 2275, 2415
BmuI	ACTGGG	1 cut(s)	954
BoxI	GACNNNNGTC	1 cut(s)	2313
BpiI	GAAGAC	2 cut(s)	467, 2193
BpmI	CTGGAG	3 cut(s)	873, 1596, 1845
Bpu10I	CCTNAGC	1 cut(s)	2067
Bpu14I	TTCGAA	1 cut(s)	2839
BpuMI	CCSGG	1 cut(s)	1974
Bsa29I	ATCGAT	1 cut(s)	2423
BsaI	GGTCTC	2 cut(s)	41, 2754
BsaJI	CCNNGG	5 cut(s)	814, 1290, 1320, 1973, 2638
BsaWI	WCCGGW	3 cut(s)	50, 84, 1355
BsaXI	ACNNNNNCTCC	2 cut(s)	2584, 2614
Bsc4I	CCNNNNNNNGG	5 cut(s)	151, 800, 1024, 1151, 1296
Bse118I	RCCGGY	2 cut(s)	50, 84
Bse21I	CCTNAGG	1 cut(s)	1920
Bse3DI	GCAATG	5 cut(s)	43, 116, 462, 1188, 1834
BseBI	CCWGG	2 cut(s)	1152, 3056
BseCI	ATCGAT	1 cut(s)	2423
BseDI	CCNNGG	5 cut(s)	814, 1290, 1320, 1973, 2638
BseGI	GGATG	8 cut(s)	403, 578, 1780, 1930, 1966, 2383, 2520, 2860
BseLI	CCNNNNNNNGG	5 cut(s)	151, 800, 1024, 1151, 1296
BseMI	GCAATG	5 cut(s)	43, 116, 462, 1188, 1834
BseMII	CTCAG	6 cut(s)	627, 991, 1270, 1377, 1619, 1911
BseRI	GAGGAG	1 cut(s)	319
BseYI	CCCAGC	2 cut(s)	568, 1576
BsgI	GTGCAG	1 cut(s)	2558
Bsh1285I	CGRYCG	1 cut(s)	2423
BshFI	GGCC	5 cut(s)	1303, 1325, 1391, 1727, 2306
BshTI	ACCGGT	2 cut(s)	50, 84
BshVI	ATCGAT	1 cut(s)	2423
BsiEI	CGRYCG	1 cut(s)	2423
BsiHKAI	GWGCWC	1 cut(s)	2236
BsiSI	CCGG	5 cut(s)	51, 85, 1356, 1973, 2603
BslFI	GGGAC	2 cut(s)	776, 2430
BslI	CCNNNNNNNGG	5 cut(s)	151, 800, 1024, 1151, 1296
BsmAI	GTCTC	9 cut(s)	41, 551, 1104, 1259, 1446, 1608, 1614, 2668, 2754
BsmBI	CGTCTC	1 cut(s)	1259
BsmFI	GGGAC	2 cut(s)	776, 2430
BsnI	GGCC	5 cut(s)	1303, 1325, 1391, 1727, 2306
Bso31I	GGTCTC	2 cut(s)	41, 2754
Bsp119I	TTCGAA	1 cut(s)	2839
Bsp1286I	GDGCHC	1 cut(s)	2236
Bsp1407I	TGTACA	2 cut(s)	1693, 1733
Bsp19I	CCATGG	1 cut(s)	1320
BspACI	CCGC	5 cut(s)	218, 412, 1297, 2501, 2525
BspANI	GGCC	5 cut(s)	1303, 1325, 1391, 1727, 2306
BspCNI	CTCAG	6 cut(s)	628, 990, 1269, 1378, 1618, 1912
BspDI	ATCGAT	1 cut(s)	2423
BspLI	GGNNCC	1 cut(s)	792
BspMAI	CTGCAG	2 cut(s)	330, 2241
BspMI	ACCTGC	1 cut(s)	1015
BspPI	GGATC	5 cut(s)	72, 436, 512, 1543, 1985
BspT104I	TTCGAA	1 cut(s)	2839
BspTI	CTTAAG	1 cut(s)	773
BspTNI	GGTCTC	2 cut(s)	41, 2754
BsrBI	CCGCTC	1 cut(s)	2527
BsrDI	GCAATG	5 cut(s)	43, 116, 462, 1188, 1834
BsrFI	RCCGGY	2 cut(s)	50, 84
BsrGI	TGTACA	2 cut(s)	1693, 1733
BssAI	RCCGGY	2 cut(s)	50, 84
BssECI	CCNNGG	5 cut(s)	814, 1290, 1320, 1973, 2638
BssT1I	CCWWGG	2 cut(s)	1290, 1320
Bst2UI	CCWGG	2 cut(s)	1152, 3056
Bst4CI	ACNGT	5 cut(s)	628, 1381, 2199, 2395, 2679
Bst6I	CTCTTC	3 cut(s)	549, 1773, 2666
BstAFI	CTTAAG	1 cut(s)	773
BstAPI	GCANNNNNTGC	2 cut(s)	1286, 1627
BstAUI	TGTACA	2 cut(s)	1693, 1733
BstBI	TTCGAA	1 cut(s)	2839
BstC8I	GCNNGC	5 cut(s)	96, 171, 1305, 2011, 2232
BstDEI	CTNAG	8 cut(s)	188, 636, 977, 1256, 1386, 1605, 1920, 2067
BstDSI	CCRYGG	2 cut(s)	814, 1320
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstF5I	GGATG	8 cut(s)	403, 578, 1780, 1930, 1966, 2383, 2520, 2860
BstHHI	GCGC	2 cut(s)	78, 1906
BstMAI	GTCTC	9 cut(s)	41, 551, 1104, 1259, 1446, 1608, 1614, 2668, 2754
BstMCI	CGRYCG	1 cut(s)	2423
BstNI	CCWGG	2 cut(s)	1152, 3056
BstNSI	RCATGY	1 cut(s)	474
BstPAI	GACNNNNGTC	1 cut(s)	2313
BstSCI	CCNGG	3 cut(s)	1150, 1972, 3054
BstSFI	CTRYAG	3 cut(s)	326, 2237, 2391
BstV2I	GAAGAC	2 cut(s)	467, 2193
Bsu15I	ATCGAT	1 cut(s)	2423
Bsu36I	CCTNAGG	1 cut(s)	1920
BsuRI	GGCC	5 cut(s)	1303, 1325, 1391, 1727, 2306
BsuTUI	ATCGAT	1 cut(s)	2423
BtgI	CCRYGG	2 cut(s)	814, 1320
BtsCI	GGATG	8 cut(s)	403, 578, 1780, 1930, 1966, 2383, 2520, 2860
BtsI	GCAGTG	5 cut(s)	931, 1339, 1913, 2234, 3032
BveI	ACCTGC	1 cut(s)	1015
Cac8I	GCNNGC	5 cut(s)	96, 171, 1305, 2011, 2232
CaiI	CAGNNNCTG	1 cut(s)	2692
CfoI	GCGC	2 cut(s)	78, 1906
Cfr10I	RCCGGY	2 cut(s)	50, 84
Cfr13I	GGNCC	2 cut(s)	790, 2576
ClaI	ATCGAT	1 cut(s)	2423
CseI	GACGC	1 cut(s)	100
CsiI	ACCWGGT	1 cut(s)	3054
CspAI	ACCGGT	2 cut(s)	50, 84
CspCI	CAANNNNNGTGG	2 cut(s)	1471, 1506
DdeI	CTNAG	8 cut(s)	188, 636, 977, 1256, 1386, 1605, 1920, 2067
DraI	TTTAAA	1 cut(s)	1035
DraIII	CACNNNGTG	2 cut(s)	583, 1346
DriI	GACNNNNNGTC	1 cut(s)	1680
Eam1104I	CTCTTC	3 cut(s)	549, 1773, 2666
Eam1105I	GACNNNNNGTC	1 cut(s)	1680
EarI	CTCTTC	3 cut(s)	549, 1773, 2666
Eco130I	CCWWGG	2 cut(s)	1290, 1320
Eco147I	AGGCCT	1 cut(s)	1391
Eco31I	GGTCTC	2 cut(s)	41, 2754
Eco32I	GATATC	1 cut(s)	2365
Eco47I	GGWCC	2 cut(s)	790, 2576
Eco57I	CTGAAG	5 cut(s)	77, 1218, 1242, 2361, 3068
Eco81I	CCTNAGG	1 cut(s)	1920
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	790
EcoRI	GAATTC	2 cut(s)	972, 2828
EcoRII	CCWGG	2 cut(s)	1150, 3054
EcoRV	GATATC	1 cut(s)	2365
EcoT14I	CCWWGG	2 cut(s)	1290, 1320
EcoT22I	ATGCAT	1 cut(s)	2430
ErhI	CCWWGG	2 cut(s)	1290, 1320
Esp3I	CGTCTC	1 cut(s)	1259
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	2 cut(s)	776, 2430
FauI	CCCGC	1 cut(s)	2532
FauNDI	CATATG	2 cut(s)	666, 1093
FbaI	TGATCA	3 cut(s)	669, 1756, 2608
FblI	GTMKAC	1 cut(s)	721
FokI	GGATG	8 cut(s)	410, 585, 1787, 1937, 1973, 2390, 2507, 2847
FspBI	CTAG	4 cut(s)	140, 1901, 1940, 2582
GlaI	GCGC	2 cut(s)	77, 1905
GsaI	CCCAGC	2 cut(s)	572, 1580
GsuI	CTGGAG	3 cut(s)	873, 1596, 1845
HaeIII	GGCC	5 cut(s)	1303, 1325, 1391, 1727, 2306
HapII	CCGG	5 cut(s)	51, 85, 1356, 1973, 2603
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	2 cut(s)	78, 1906
Hin6I	GCGC	2 cut(s)	76, 1904
HinP1I	GCGC	2 cut(s)	76, 1904
HincII	GTYRAC	4 cut(s)	722, 1788, 1970, 2682
HindII	GTYRAC	4 cut(s)	722, 1788, 1970, 2682
HindIII	AAGCTT	1 cut(s)	2216
HpaI	GTTAAC	1 cut(s)	1788
HpaII	CCGG	5 cut(s)	51, 85, 1356, 1973, 2603
Hpy188III	TCNNGA	7 cut(s)	145, 479, 551, 969, 1145, 1533, 1824
HpyCH4III	ACNGT	5 cut(s)	628, 1381, 2199, 2395, 2679
HpyCH4IV	ACGT	1 cut(s)	2622
HpyF3I	CTNAG	8 cut(s)	188, 636, 977, 1256, 1386, 1605, 1920, 2067
HpySE526I	ACGT	1 cut(s)	2622
HspAI	GCGC	2 cut(s)	76, 1904
Ksp22I	TGATCA	3 cut(s)	669, 1756, 2608
KspAI	GTTAAC	1 cut(s)	1788
LweI	GCATC	4 cut(s)	310, 1327, 2275, 2415
MabI	ACCWGGT	1 cut(s)	3054
MaeI	CTAG	4 cut(s)	140, 1901, 1940, 2582
MaeII	ACGT	1 cut(s)	2622
MaeIII	GTNAC	9 cut(s)	131, 847, 940, 1346, 2029, 2193, 2263, 2482, 2516
MbiI	CCGCTC	1 cut(s)	2527
MfeI	CAATTG	5 cut(s)	12, 273, 831, 1542, 2061
MhlI	GDGCHC	1 cut(s)	2236
MlyI	GAGTC	5 cut(s)	855, 1578, 1728, 1979, 2998
MmeI	TCCRAC	2 cut(s)	1045, 2887
Mph1103I	ATGCAT	1 cut(s)	2430
MroXI	GAANNNNTTC	3 cut(s)	1227, 1875, 2436
MseI	TTAA	9 cut(s)	420, 774, 809, 1034, 1668, 1787, 2016, 2349, 3076
MslI	CAYNNNNRTG	2 cut(s)	924, 2774
MspA1I	CMGCKG	2 cut(s)	605, 1307
MspCI	CTTAAG	1 cut(s)	773
MspI	CCGG	5 cut(s)	51, 85, 1356, 1973, 2603
MspR9I	CCNGG	3 cut(s)	1152, 1974, 3056
MunI	CAATTG	5 cut(s)	12, 273, 831, 1542, 2061
MvaI	CCWGG	2 cut(s)	1152, 3056
NciI	CCSGG	1 cut(s)	1974
NcoI	CCATGG	1 cut(s)	1320
NdeI	CATATG	2 cut(s)	666, 1093
NlaIV	GGNNCC	1 cut(s)	792
NmuCI	GTSAC	5 cut(s)	131, 847, 1346, 2193, 2263
NsiI	ATGCAT	1 cut(s)	2430
NspI	RCATGY	1 cut(s)	474
NspV	TTCGAA	1 cut(s)	2839
OliI	CACNNNNGTG	1 cut(s)	2774
PaqCI	CACCTGC	1 cut(s)	1015
PceI	AGGCCT	1 cut(s)	1391
PciI	ACATGT	1 cut(s)	470
PdmI	GAANNNNTTC	3 cut(s)	1227, 1875, 2436
PinAI	ACCGGT	2 cut(s)	50, 84
Ple19I	CGATCG	1 cut(s)	2423
PleI	GAGTC	5 cut(s)	854, 1577, 1727, 1979, 2998
PpsI	GAGTC	5 cut(s)	854, 1577, 1727, 1979, 2998
PpuMI	RGGWCCY	1 cut(s)	790
PscI	ACATGT	1 cut(s)	470
PshAI	GACNNNNGTC	1 cut(s)	2313
PsiI	TTATAA	2 cut(s)	27, 2654
Psp5II	RGGWCCY	1 cut(s)	790
Psp6I	CCWGG	2 cut(s)	1150, 3054
PspFI	CCCAGC	2 cut(s)	568, 1576
PspGI	CCWGG	2 cut(s)	1150, 3054
PspN4I	GGNNCC	1 cut(s)	792
PspPI	GGNCC	2 cut(s)	790, 2576
PspPPI	RGGWCCY	1 cut(s)	790
PstI	CTGCAG	2 cut(s)	330, 2241
PstNI	CAGNNNCTG	1 cut(s)	2692
PvuI	CGATCG	1 cut(s)	2423
PvuII	CAGCTG	2 cut(s)	605, 1307
RseI	CAYNNNNRTG	2 cut(s)	924, 2774
SalI	GTCGAC	1 cut(s)	720
SaqAI	TTAA	9 cut(s)	420, 774, 809, 1034, 1668, 1787, 2016, 2349, 3076
Sau96I	GGNCC	2 cut(s)	790, 2576
SchI	GAGTC	5 cut(s)	855, 1578, 1728, 1979, 2998
ScrFI	CCNGG	3 cut(s)	1152, 1974, 3056
SduI	GDGCHC	1 cut(s)	2236
SexAI	ACCWGGT	1 cut(s)	3054
SfaNI	GCATC	4 cut(s)	310, 1327, 2275, 2415
SfcI	CTRYAG	3 cut(s)	326, 2237, 2391
SfuI	TTCGAA	1 cut(s)	2839
SinI	GGWCC	2 cut(s)	790, 2576
SmiMI	CAYNNNNRTG	2 cut(s)	924, 2774
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
SpeI	ACTAGT	1 cut(s)	139
SseBI	AGGCCT	1 cut(s)	1391
SsiI	CCGC	5 cut(s)	218, 412, 1297, 2501, 2525
SspI	AATATT	2 cut(s)	1998, 2473
SspMI	CTAG	4 cut(s)	140, 1901, 1940, 2582
StuI	AGGCCT	1 cut(s)	1391
StyD4I	CCNGG	3 cut(s)	1150, 1972, 3054
StyI	CCWWGG	2 cut(s)	1290, 1320
TaaI	ACNGT	5 cut(s)	628, 1381, 2199, 2395, 2679
TaiI	ACGT	1 cut(s)	2625
TaqI	TCGA	6 cut(s)	721, 1684, 1809, 2423, 2839, 3018
TaqII	GACCGA	1 cut(s)	2652
TatI	WGTACW	5 cut(s)	193, 959, 1157, 1693, 1733
TauI	GCSGC	2 cut(s)	221, 2504
Tru1I	TTAA	9 cut(s)	420, 774, 809, 1034, 1668, 1787, 2016, 2349, 3076
Tru9I	TTAA	9 cut(s)	420, 774, 809, 1034, 1668, 1787, 2016, 2349, 3076
TseFI	GTSAC	5 cut(s)	131, 847, 1346, 2193, 2263
Tsp45I	GTSAC	5 cut(s)	131, 847, 1346, 2193, 2263
TspGWI	ACGGA	2 cut(s)	119, 803
Vha464I	CTTAAG	1 cut(s)	773
VpaK11BI	GGWCC	2 cut(s)	790, 2576
XagI	CCTNNNNNAGG	1 cut(s)	149
XapI	RAATTY	4 cut(s)	422, 972, 1585, 2828
XceI	RCATGY	1 cut(s)	474
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2494
XmiI	GTMKAC	1 cut(s)	721
XmnI	GAANNNNTTC	3 cut(s)	1227, 1875, 2436
XspI	CTAG	4 cut(s)	140, 1901, 1940, 2582
Zsp2I	ATGCAT	1 cut(s)	2430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.