Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

15072141 .. 15085552

Gene Structure 13412 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG087500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2400 bp

ATGAATCACTCAAGTGGGTTGCCTTATAACCCAAGAAATGACTTGGAGACCGGTCTGAAGGAGGTTCATGTTGAGCGCACGAACCGTTATTGGGTGCAAGCAAAACTATATCTTAAAGCAATATATCGATTCCGGCACACACTAGTCCTGAAAAGGGCAGAAGAAAAGAAGCAGGCGGTACGGAAACTTAGAGCACATGCCCAAGCCCTTAGAGCTGCGGCTATCTTCAAAGAGGTTGCAGATCAAGTGAAAGGGACCGGTGATTGTTTTCAAATTGAACCAGATGAACTTGCTAGTTTGACGAGGAATAGTGCTGTTGATGCTCTGCAGCAATATGGGGGGAAGGAAGGCTTGGCAGATTTACTGAAAACAGATTTAGACAAGGGAATTGATGGGGATGATTTACTAAAGAGGAGAATTAAATTTGGATCAAACATATATCCTCCAAAAACAGCAACGAGCCACTGGACATGTCTTCGGGAAGCTCTGTACGATTTTACTCGGATCGTTTTGGTGATTGCTTTTATGGGTTCTGTTGTGATGGGTATTCTGGAAGAGACTAAAAAGCTGGGATGGAACGATGTGTTCAGCGTTGCTATTGCAGCTGCCATGTTCATTCTTATCACAGTCTTATCTGAGTATATTCAAGCTCCTCAGTTCCAGCATATGATTATCAGGGAGGAAATCAGAAACATAAAATTGAAGGTTATTAGAGCTGGTCGACAAGTTCCAGTTTCTATTTGTGATATTGTTGTTGGTGATGTTATATTCCTTGAGTTTGGTGATGAGGTCCCTGCTGATGGCATTTTAATCCGTGGTCGCTCACTTGCAATTGATAAGAGTAGAGTCACTGGAGAGAGCAAGATTTTTCACAAGGATTCAAGGAACCCATTTCTACGGTCTGGCTGGAAAGTAGCACATGGCATTGCTACTATGCTGGTAACTGGGGTTGGGAAATGTACTGAATCAGGAATTCTCAGGACTAGCACTTCTTCAAATGACACCGAGAATAAAACCCCCTTGCAGGTGCTTTTAAAGGAGGTTGCTACTTTCATGGGTGCTGTCGGATTCATGGGTGCTGCCATTGTTGCATATGTTGTTTGGTTCAGAGACTTCTTTACTGGTGATAATTCAAATGGAAGTCCTGAACCTGGAAGTACACTTGAAGAAGTGATTAGAATTAGTACCATTGCAGTCGCCATTTTTGTTGTTGCATTACCTGAAGTGCTTCCTTCAGCTTTCAACATAAGCCGTCTCAGCACAATGAAAAAGATGGAGGCAGACAATGCCTTGGTGCGGAGGCCAGCTGTATGTGAAACCATGGCCTTATGCAATGATGCACTTTGTGACAAGACTGGAATAACTTTGAACCAGATGACTGTTTCTGAGGCCTATGCTGGTCAGAATAAAATCAATTTTGCTGACAGCACAAGCAACTTGTCTCCGATACTATCATCCTTACTTGTTGAAGGAATTGCTCATTATACGAGTGGCAGTCTATCTGTGCTTGGGAGTGCTGATGTTCAGGCTTCTGGATCACCAATTGATAGGGCAATTCTGCATTGGGGAGTCAAGCTGGGAATGAATTTTGATGATATAATGTCTCAGTCTCCAGTTATGCAAGTTTTGCCATTCAGTTCAGAGAAAAAACGAGGTGGTGTTGCACTTAATCTGACACACGGTCGAGTTCATGTACACTGGAAAGGGGCAGCTGAAGGAGTCTTGGCCTCATGTACAAGATACATTGGGGCTAATGATCAGGTTTTACCAATGGATGATGATAAGTTAACATTTTTTCGAAAAGCTATCGAGGATATGGCTTCTGGAGGTTTGCATTGCGTTGCTATTGCATATAGATCACTTGAATTGGAAACTGTTCTAATCAATAGTAATGGACAACTAGCGCGGTGGGAACTACCTGAGGATGACCTCATTTTACTAGCTATTGTTGGTATTAAGGATGATTGTCAACCGGGGATCAAGGACTCGGTGGAAATATTGCAAAGAGCTGGCATTAAGGTACGCCTTGTTACGCATGACAATCCTCAAACTGCAAAAGCAATTGCTAAGGAATGTGGCATACTTGTTTCTGATGGGTCAGATGCTAGTGAGGAAAATCTTATTGAAGGAAAAGTGTTCCGAGAACTTTCTGATAGTCAGAGAGAAGGATTAGCAGAGAATATTTTGGTAATGGCACGGGCTTCCCCCAATGACAAGCTTTTGCTTGTGCGAGCACTGCAGAAAAGAGGAAAGGTTGTTGCTGTCACTGGATATGTCAGTAATGATGCTTACGCACTACATGAGATTCTTTCCGGAAAAAGAAAATGGTGTGTTCTTGAAGGACAGTTGTCAGGTCGTGATCAGCAGAAAATAACTCCAGTGAAAGTCTTGCTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

799

Amino Acids

87.57

Weight (kDa)

7.57

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	112 - 174	2.3e-09	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	233 - 324	1.1e-15	P-type ATPase actuator domain
Cation_ATPase	PF13246	507 - 658	1.1e-25	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	645 - 763	2.7e-07	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	27
AarI	CACCTGC	1 cut(s)	1015
Acc36I	ACCTGC	1 cut(s)	1015
AccI	GTMKAC	1 cut(s)	721
AccII	CGCG	1 cut(s)	1906
AccIII	TCCGGA	1 cut(s)	2312
AciI	CCGC	4 cut(s)	176, 218, 1297, 1906
AclWI	GGATC	4 cut(s)	436, 512, 1543, 1985
AcsI	RAATTY	3 cut(s)	422, 972, 1585
AcuI	CTGAAG	4 cut(s)	77, 1218, 1242, 1734
AdeI	CACNNNGTG	1 cut(s)	1346
AfaI	GTAC	8 cut(s)	180, 491, 961, 1159, 1186, 1695, 1735, 2022
AfiI	CCNNNNNNNGG	6 cut(s)	91, 154, 800, 1024, 1151, 1296
AflIII	ACRYGT	1 cut(s)	470
AgeI	ACCGGT	2 cut(s)	50, 257
AhdI	GACNNNNNGTC	1 cut(s)	1680
AhlI	ACTAGT	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	1150
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AleI	CACNNNNGTG	1 cut(s)	12
Alw21I	GWGCWC	2 cut(s)	196, 2236
Alw26I	GTCTC	7 cut(s)	41, 551, 1104, 1259, 1446, 1608, 1614
AlwI	GGATC	4 cut(s)	436, 512, 1543, 1985
Aor13HI	TCCGGA	1 cut(s)	2312
AoxI	GGCC	4 cut(s)	1301, 1323, 1389, 1725
ApeKI	GCWGC	6 cut(s)	215, 328, 602, 605, 1079, 1709
ApoI	RAATTY	3 cut(s)	422, 972, 1585
AsiGI	ACCGGT	2 cut(s)	50, 257
Asp700I	GAANNNNTTC	2 cut(s)	1227, 1875
AspLEI	GCGC	2 cut(s)	78, 1906
AspS9I	GGNCC	2 cut(s)	255, 790
AsuC2I	CCSGG	1 cut(s)	1974
AsuHPI	GGTGA	6 cut(s)	272, 526, 770, 794, 1136, 1530
AsuII	TTCGAA	1 cut(s)	1798
AvaII	GGWCC	2 cut(s)	255, 790
AxyI	CCTNAGG	1 cut(s)	1920
BbsI	GAAGAC	1 cut(s)	467
Bbv12I	GWGCWC	2 cut(s)	196, 2236
BbvI	GCAGC	6 cut(s)	202, 340, 592, 614, 1066, 1721
BccI	CCATC	6 cut(s)	386, 535, 567, 794, 1267, 2087
BceAI	ACGGC	1 cut(s)	1236
BciT130I	CCWGG	1 cut(s)	1152
BclI	TGATCA	2 cut(s)	1756, 2359
BcnI	CCSGG	1 cut(s)	1974
BcoDI	GTCTC	7 cut(s)	41, 551, 1104, 1259, 1446, 1608, 1614
BcuI	ACTAGT	1 cut(s)	142
BfaI	CTAG	6 cut(s)	143, 294, 984, 1901, 1940, 2106
BfmI	CTRYAG	2 cut(s)	326, 2237
BfuAI	ACCTGC	1 cut(s)	1015
BisI	GCNGC	7 cut(s)	216, 219, 329, 603, 606, 1080, 1710
BlsI	GCNGC	7 cut(s)	217, 220, 330, 604, 607, 1081, 1711
Bme1390I	CCNGG	2 cut(s)	1152, 1974
Bme18I	GGWCC	2 cut(s)	255, 790
BmeRI	GACNNNNNGTC	1 cut(s)	1680
BmgT120I	GGNCC	2 cut(s)	255, 790
BmiI	GGNNCC	3 cut(s)	256, 792, 887
BmrFI	CCNGG	2 cut(s)	1152, 1974
BmrI	ACTGGG	1 cut(s)	954
BmsI	GCATC	4 cut(s)	310, 1327, 2092, 2275
BmuI	ACTGGG	1 cut(s)	954
BoxI	GACNNNNGTC	1 cut(s)	2347
BpiI	GAAGAC	1 cut(s)	467
BpmI	CTGGAG	4 cut(s)	873, 1596, 1845, 2361
Bpu10I	CCTNAGC	1 cut(s)	2067
Bpu14I	TTCGAA	1 cut(s)	1798
BpuEI	CTTGAG	1 cut(s)	794
BpuMI	CCSGG	1 cut(s)	1974
Bsa29I	ATCGAT	1 cut(s)	127
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	4 cut(s)	814, 1290, 1320, 1973
BsaWI	WCCGGW	3 cut(s)	50, 257, 2312
Bsc4I	CCNNNNNNNGG	6 cut(s)	91, 154, 800, 1024, 1151, 1296
Bse118I	RCCGGY	2 cut(s)	50, 257
Bse21I	CCTNAGG	1 cut(s)	1920
Bse3DI	GCAATG	4 cut(s)	924, 1188, 1339, 1834
BseAI	TCCGGA	1 cut(s)	2312
BseBI	CCWGG	1 cut(s)	1152
BseCI	ATCGAT	1 cut(s)	127
BseDI	CCNNGG	4 cut(s)	814, 1290, 1320, 1973
BseGI	GGATG	6 cut(s)	403, 578, 1454, 1780, 1930, 1966
BseLI	CCNNNNNNNGG	6 cut(s)	91, 154, 800, 1024, 1151, 1296
BseMI	GCAATG	4 cut(s)	924, 1188, 1339, 1834
BseMII	CTCAG	7 cut(s)	627, 668, 991, 1270, 1377, 1619, 1911
BseRI	GAGGAG	2 cut(s)	427, 642
BseXI	GCAGC	6 cut(s)	202, 340, 592, 614, 1066, 1721
BseYI	CCCAGC	2 cut(s)	568, 1576
Bsh1236I	CGCG	1 cut(s)	1906
Bsh1285I	CGRYCG	1 cut(s)	1684
BshFI	GGCC	4 cut(s)	1303, 1325, 1391, 1727
BshTI	ACCGGT	2 cut(s)	50, 257
BshVI	ATCGAT	1 cut(s)	127
BsiEI	CGRYCG	1 cut(s)	1684
BsiHKAI	GWGCWC	2 cut(s)	196, 2236
BsiSI	CCGG	5 cut(s)	51, 133, 258, 1973, 2313
BslFI	GGGAC	2 cut(s)	268, 776
BslI	CCNNNNNNNGG	6 cut(s)	91, 154, 800, 1024, 1151, 1296
BsmAI	GTCTC	7 cut(s)	41, 551, 1104, 1259, 1446, 1608, 1614
BsmBI	CGTCTC	1 cut(s)	1259
BsmFI	GGGAC	2 cut(s)	268, 776
BsnI	GGCC	4 cut(s)	1303, 1325, 1391, 1727
Bso31I	GGTCTC	1 cut(s)	41
Bsp119I	TTCGAA	1 cut(s)	1798
Bsp1286I	GDGCHC	2 cut(s)	196, 2236
Bsp13I	TCCGGA	1 cut(s)	2312
Bsp1407I	TGTACA	2 cut(s)	1693, 1733
Bsp143I	GATC	8 cut(s)	241, 428, 504, 1535, 1756, 1856, 1977, 2359
Bsp19I	CCATGG	1 cut(s)	1320
BspACI	CCGC	4 cut(s)	176, 218, 1297, 1906
BspANI	GGCC	4 cut(s)	1303, 1325, 1391, 1727
BspCNI	CTCAG	7 cut(s)	628, 667, 990, 1269, 1378, 1618, 1912
BspDI	ATCGAT	1 cut(s)	127
BspEI	TCCGGA	1 cut(s)	2312
BspFNI	CGCG	1 cut(s)	1906
BspLI	GGNNCC	3 cut(s)	256, 792, 887
BspMAI	CTGCAG	2 cut(s)	330, 2241
BspMI	ACCTGC	1 cut(s)	1015
BspPI	GGATC	4 cut(s)	436, 512, 1543, 1985
BspT104I	TTCGAA	1 cut(s)	1798
BspTNI	GGTCTC	1 cut(s)	41
BsrDI	GCAATG	4 cut(s)	924, 1188, 1339, 1834
BsrFI	RCCGGY	2 cut(s)	50, 257
BsrGI	TGTACA	2 cut(s)	1693, 1733
BssAI	RCCGGY	2 cut(s)	50, 257
BssECI	CCNNGG	4 cut(s)	814, 1290, 1320, 1973
BssMI	GATC	8 cut(s)	241, 428, 504, 1535, 1756, 1856, 1977, 2359
BssT1I	CCWWGG	2 cut(s)	1290, 1320
Bst2UI	CCWGG	1 cut(s)	1152
Bst4CI	ACNGT	7 cut(s)	86, 628, 900, 1381, 1682, 1876, 2346
Bst6I	CTCTTC	1 cut(s)	549
BstAPI	GCANNNNNTGC	2 cut(s)	1286, 1627
BstAUI	TGTACA	2 cut(s)	1693, 1733
BstBI	TTCGAA	1 cut(s)	1798
BstC8I	GCNNGC	6 cut(s)	99, 174, 1305, 2011, 2232, 2394
BstDSI	CCRYGG	2 cut(s)	814, 1320
BstF5I	GGATG	6 cut(s)	403, 578, 1454, 1780, 1930, 1966
BstFNI	CGCG	1 cut(s)	1906
BstHHI	GCGC	2 cut(s)	78, 1906
BstKTI	GATC	8 cut(s)	244, 431, 507, 1538, 1759, 1859, 1980, 2362
BstMAI	GTCTC	7 cut(s)	41, 551, 1104, 1259, 1446, 1608, 1614
BstMBI	GATC	8 cut(s)	241, 428, 504, 1535, 1756, 1856, 1977, 2359
BstMCI	CGRYCG	1 cut(s)	1684
BstMWI	GCNNNNNNNGC	8 cut(s)	212, 320, 602, 1088, 1257, 1286, 1627, 2236
BstNI	CCWGG	1 cut(s)	1152
BstNSI	RCATGY	2 cut(s)	200, 474
BstPAI	GACNNNNGTC	1 cut(s)	2347
BstSCI	CCNGG	2 cut(s)	1150, 1972
BstSFI	CTRYAG	2 cut(s)	326, 2237
BstUI	CGCG	1 cut(s)	1906
BstV1I	GCAGC	6 cut(s)	202, 340, 592, 614, 1066, 1721
BstV2I	GAAGAC	1 cut(s)	467
Bsu15I	ATCGAT	1 cut(s)	127
Bsu36I	CCTNAGG	1 cut(s)	1920
BsuRI	GGCC	4 cut(s)	1303, 1325, 1391, 1727
BsuTUI	ATCGAT	1 cut(s)	127
BtgI	CCRYGG	2 cut(s)	814, 1320
BtsCI	GGATG	6 cut(s)	403, 578, 1454, 1780, 1930, 1966
BtsI	GCAGTG	1 cut(s)	2234
BtsIMutI	CAGTG	6 cut(s)	463, 849, 1696, 2234, 2265, 2385
BveI	ACCTGC	1 cut(s)	1015
Cac8I	GCNNGC	6 cut(s)	99, 174, 1305, 2011, 2232, 2394
CfoI	GCGC	2 cut(s)	78, 1906
Cfr10I	RCCGGY	2 cut(s)	50, 257
Cfr13I	GGNCC	2 cut(s)	255, 790
ClaI	ATCGAT	1 cut(s)	127
Csp6I	GTAC	8 cut(s)	179, 490, 960, 1158, 1185, 1694, 1734, 2021
CspAI	ACCGGT	2 cut(s)	50, 257
CviQI	GTAC	8 cut(s)	179, 490, 960, 1158, 1185, 1694, 1734, 2021
DpnI	GATC	8 cut(s)	243, 430, 506, 1537, 1758, 1858, 1979, 2361
DpnII	GATC	8 cut(s)	241, 428, 504, 1535, 1756, 1856, 1977, 2359
DraI	TTTAAA	1 cut(s)	1035
DraIII	CACNNNGTG	1 cut(s)	1346
DriI	GACNNNNNGTC	1 cut(s)	1680
Eam1104I	CTCTTC	1 cut(s)	549
Eam1105I	GACNNNNNGTC	1 cut(s)	1680
EarI	CTCTTC	1 cut(s)	549
Eco130I	CCWWGG	2 cut(s)	1290, 1320
Eco147I	AGGCCT	1 cut(s)	1391
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	2 cut(s)	255, 790
Eco57I	CTGAAG	4 cut(s)	77, 1218, 1242, 1734
Eco81I	CCTNAGG	1 cut(s)	1920
EcoO109I	RGGNCCY	1 cut(s)	790
EcoRI	GAATTC	1 cut(s)	972
EcoRII	CCWGG	1 cut(s)	1150
EcoT14I	CCWWGG	2 cut(s)	1290, 1320
ErhI	CCWWGG	2 cut(s)	1290, 1320
Esp3I	CGTCTC	1 cut(s)	1259
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	2 cut(s)	268, 776
FauNDI	CATATG	2 cut(s)	666, 1093
FbaI	TGATCA	2 cut(s)	1756, 2359
FblI	GTMKAC	1 cut(s)	721
Fnu4HI	GCNGC	7 cut(s)	216, 219, 329, 603, 606, 1080, 1710
FokI	GGATG	6 cut(s)	410, 585, 1441, 1787, 1937, 1973
Fsp4HI	GCNGC	7 cut(s)	216, 219, 329, 603, 606, 1080, 1710
FspBI	CTAG	6 cut(s)	143, 294, 984, 1901, 1940, 2106
GlaI	GCGC	2 cut(s)	77, 1905
GluI	GCNGC	7 cut(s)	216, 219, 329, 603, 606, 1080, 1710
GsaI	CCCAGC	2 cut(s)	572, 1580
GsuI	CTGGAG	4 cut(s)	873, 1596, 1845, 2361
HaeIII	GGCC	4 cut(s)	1303, 1325, 1391, 1727
HapII	CCGG	5 cut(s)	51, 133, 258, 1973, 2313
HhaI	GCGC	2 cut(s)	78, 1906
Hin6I	GCGC	2 cut(s)	76, 1904
HinP1I	GCGC	2 cut(s)	76, 1904
HincII	GTYRAC	3 cut(s)	722, 1788, 1970
HindII	GTYRAC	3 cut(s)	722, 1788, 1970
HindIII	AAGCTT	1 cut(s)	2216
HpaI	GTTAAC	1 cut(s)	1788
HpaII	CCGG	5 cut(s)	51, 133, 258, 1973, 2313
HphI	GGTGA	6 cut(s)	272, 526, 770, 794, 1136, 1530
Hpy166II	GTNNAC	5 cut(s)	722, 1160, 1696, 1788, 1970
Hpy8I	GTNNAC	5 cut(s)	722, 1160, 1696, 1788, 1970
HpyCH4III	ACNGT	7 cut(s)	86, 628, 900, 1381, 1682, 1876, 2346
HpyF10VI	GCNNNNNNNGC	8 cut(s)	212, 320, 602, 1088, 1257, 1286, 1627, 2236
HspAI	GCGC	2 cut(s)	76, 1904
Kpn2I	TCCGGA	1 cut(s)	2312
Ksp22I	TGATCA	2 cut(s)	1756, 2359
KspAI	GTTAAC	1 cut(s)	1788
Kzo9I	GATC	8 cut(s)	241, 428, 504, 1535, 1756, 1856, 1977, 2359
LmnI	GCTCC	1 cut(s)	655
Lsp1109I	GCAGC	6 cut(s)	202, 340, 592, 614, 1066, 1721
LweI	GCATC	4 cut(s)	310, 1327, 2092, 2275
MaeI	CTAG	6 cut(s)	143, 294, 984, 1901, 1940, 2106
MaeIII	GTNAC	5 cut(s)	847, 940, 1346, 2029, 2263
MalI	GATC	8 cut(s)	243, 430, 506, 1537, 1758, 1858, 1979, 2361
MboI	GATC	8 cut(s)	241, 428, 504, 1535, 1756, 1856, 1977, 2359
MboII	GAAGA	6 cut(s)	173, 217, 467, 566, 984, 1178
MfeI	CAATTG	3 cut(s)	831, 1542, 2061
MhlI	GDGCHC	2 cut(s)	196, 2236
MlyI	GAGTC	4 cut(s)	855, 1578, 1728, 1979
MmeI	TCCRAC	1 cut(s)	1045
MroI	TCCGGA	1 cut(s)	2312
MroXI	GAANNNNTTC	2 cut(s)	1227, 1875
MseI	TTAA	9 cut(s)	114, 420, 809, 1034, 1668, 1787, 1956, 2016, 2398
MslI	CAYNNNNRTG	1 cut(s)	12
MspA1I	CMGCKG	3 cut(s)	605, 1307, 1712
MspI	CCGG	5 cut(s)	51, 133, 258, 1973, 2313
MspR9I	CCNGG	2 cut(s)	1152, 1974
MunI	CAATTG	3 cut(s)	831, 1542, 2061
MvaI	CCWGG	1 cut(s)	1152
MvnI	CGCG	1 cut(s)	1906
MwoI	GCNNNNNNNGC	8 cut(s)	212, 320, 602, 1088, 1257, 1286, 1627, 2236
NciI	CCSGG	1 cut(s)	1974
NcoI	CCATGG	1 cut(s)	1320
NdeI	CATATG	2 cut(s)	666, 1093
NdeII	GATC	8 cut(s)	241, 428, 504, 1535, 1756, 1856, 1977, 2359
NlaIV	GGNNCC	3 cut(s)	256, 792, 887
NmuCI	GTSAC	3 cut(s)	847, 1346, 2263
NspI	RCATGY	2 cut(s)	200, 474
NspV	TTCGAA	1 cut(s)	1798
OliI	CACNNNNGTG	1 cut(s)	12
PaqCI	CACCTGC	1 cut(s)	1015
PceI	AGGCCT	1 cut(s)	1391
PciI	ACATGT	1 cut(s)	470
PdmI	GAANNNNTTC	2 cut(s)	1227, 1875
PfeI	GAWTC	6 cut(s)	4, 129, 878, 965, 1068, 2305
PinAI	ACCGGT	2 cut(s)	50, 257
PkrI	GCNGC	7 cut(s)	217, 220, 330, 604, 607, 1081, 1711
PleI	GAGTC	4 cut(s)	854, 1577, 1727, 1979
PpsI	GAGTC	4 cut(s)	854, 1577, 1727, 1979
PpuMI	RGGWCCY	1 cut(s)	790
PscI	ACATGT	1 cut(s)	470
PshAI	GACNNNNGTC	1 cut(s)	2347
PsiI	TTATAA	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	790
Psp6I	CCWGG	1 cut(s)	1150
PspFI	CCCAGC	2 cut(s)	568, 1576
PspGI	CCWGG	1 cut(s)	1150
PspN4I	GGNNCC	3 cut(s)	256, 792, 887
PspPI	GGNCC	2 cut(s)	255, 790
PspPPI	RGGWCCY	1 cut(s)	790
PstI	CTGCAG	2 cut(s)	330, 2241
PvuII	CAGCTG	3 cut(s)	605, 1307, 1712
RsaI	GTAC	8 cut(s)	180, 491, 961, 1159, 1186, 1695, 1735, 2022
RsaNI	GTAC	8 cut(s)	179, 490, 960, 1158, 1185, 1694, 1734, 2021
RseI	CAYNNNNRTG	1 cut(s)	12
SalI	GTCGAC	1 cut(s)	720
SaqAI	TTAA	9 cut(s)	114, 420, 809, 1034, 1668, 1787, 1956, 2016, 2398
SatI	GCNGC	7 cut(s)	216, 219, 329, 603, 606, 1080, 1710
Sau3AI	GATC	8 cut(s)	241, 428, 504, 1535, 1756, 1856, 1977, 2359
Sau96I	GGNCC	2 cut(s)	255, 790
SchI	GAGTC	4 cut(s)	855, 1578, 1728, 1979
ScrFI	CCNGG	2 cut(s)	1152, 1974
SduI	GDGCHC	2 cut(s)	196, 2236
SfaNI	GCATC	4 cut(s)	310, 1327, 2092, 2275
SfcI	CTRYAG	2 cut(s)	326, 2237
SfuI	TTCGAA	1 cut(s)	1798
SinI	GGWCC	2 cut(s)	255, 790
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	2 cut(s)	10, 773
SmoI	CTYRAG	2 cut(s)	10, 773
SpeI	ACTAGT	1 cut(s)	142
SseBI	AGGCCT	1 cut(s)	1391
SsiI	CCGC	4 cut(s)	176, 218, 1297, 1906
SspI	AATATT	2 cut(s)	1998, 2182
SspMI	CTAG	6 cut(s)	143, 294, 984, 1901, 1940, 2106
StuI	AGGCCT	1 cut(s)	1391
StyD4I	CCNGG	2 cut(s)	1150, 1972
StyI	CCWWGG	2 cut(s)	1290, 1320
TaaI	ACNGT	7 cut(s)	86, 628, 900, 1381, 1682, 1876, 2346
TaqI	TCGA	5 cut(s)	127, 721, 1684, 1798, 1809
TatI	WGTACW	4 cut(s)	959, 1157, 1693, 1733
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	6 cut(s)	4, 129, 878, 965, 1068, 2305
Tru1I	TTAA	9 cut(s)	114, 420, 809, 1034, 1668, 1787, 1956, 2016, 2398
Tru9I	TTAA	9 cut(s)	114, 420, 809, 1034, 1668, 1787, 1956, 2016, 2398
TscAI	CASTG	6 cut(s)	470, 856, 1703, 2241, 2272, 2385
TseFI	GTSAC	3 cut(s)	847, 1346, 2263
TseI	GCWGC	6 cut(s)	215, 328, 602, 605, 1079, 1709
Tsp45I	GTSAC	3 cut(s)	847, 1346, 2263
TspDTI	ATGAA	9 cut(s)	17, 56, 300, 604, 1042, 1060, 1280, 1598, 1679
TspGWI	ACGGA	2 cut(s)	196, 803
TspRI	CASTG	6 cut(s)	470, 856, 1703, 2241, 2272, 2385
VpaK11BI	GGWCC	2 cut(s)	255, 790
XapI	RAATTY	3 cut(s)	422, 972, 1585
XceI	RCATGY	2 cut(s)	200, 474
XmiI	GTMKAC	1 cut(s)	721
XmnI	GAANNNNTTC	2 cut(s)	1227, 1875
XspI	CTAG	6 cut(s)	143, 294, 984, 1901, 1940, 2106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.