Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

15724161 .. 15741125

Gene Structure 16965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G007420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3081 bp

ATGAAGAATCACTCAATTGGGTTGCCTTATAACCCAAGCAATGACTTGGAGACCGGTCCGAAGGAGGATCATGTTGAGCGCATGAACCGGTGGACGCAAGCGAAACTATATCTGAAAGCATTGCACCGATTCCGTCACACACTAGTCCTGAAAAAGGCAGAAGAAAAGAAGCAGGCAGCAAGGAAACTACTTAGAGCACATACCCAAGCCCTACGAGCTGCGGCTATCTTCAAAGAAGTTGCAGATCAAGTGAAAGGGTCTGGTGATTATTTTCCAATTGAACCAGATGAACTTGCTCGTTTGACGAGGAGTAGTGATGTTGATGCTCTGCAGCAATATGGGGGGAAGGAAGGCTTGGCAGATTTACTGAAAACAGATTTAGACAAGGGAATTGATGGGGATGATTTACTAAAGCGGACAATTAAATTTGGATCAAACATAGACCCTCCAAAAACAGCAATGAGCCACTGGACATGTCTTCGGAAAGCTCTGTACAATTTTACTCGGATCGTTTTGGTGATTGCTTTTATGGGTTCTGTTGTGATGGGTATTCTGGAAGAGACTAAAAAGCTGGGATGGCACGATGTGTTCAGCGTTGCTATTGCAGCTGCCATGTTCATTCTTATCACAGTCTTATCTGAGTATATTCAAGCTCGTCAGTTCCAGCATATGATTATCAGGGAGGAAATCAGAAACATAAAATTGAAGGTTATTAGAGCTGGTCGACAAGTTGTGGTTTCTAATTGTGATATTGTTGTTGGTGATGTTCTACCTCTTAAGACTGGTGATGAGGTCCCTGCTGATGGCATTTTAATCCGTGGTCACTCACTTGCAATTGATAAGAGTAGAGTCACTGGAGAGAGCAAGATTTTTCACAAGGATTCAAGGAACCCATTTCTACGATCTGGCTGGAAAGTAGCACATGGCAGTGCTACTATGCTGGTAACTGGGGTTGGGAAATGTACTGAATCAGGAATTCTCAGGGCTAACACTTATTCAAAAGACACCGAAAATAAAACCCCCTTGCAGGTGCTTTTAACGGAGGTTGCTACTTTCATGGGTGCTGTCGGATTCATGGGTGCTGCCATTGTTGCATATGTTGTTTGGTTCAGAGACTTCTTTACTGGTGATAATTCAAATGGAAGTCCTGAACCTGGAAGTACACTTGAAGAAGTGATTAGAATTAGTACCATTGCAGTTGCCATTTTTGTCGTTGCATTACCTGAAGTGCTTCCTTCAGCTTTCAACATAAGCCGTCTCAGCACAATGAAAAAGATGAAGGCAGACAATGCCTTGGTGCGGAGGCCAGCTGTATGTGAAACCATGGCCTTATGCAATGATGCACTTTGTGACAAGACTGGAATAACTTTGAACCAGATGACTGTTTCTGAGGCCTATGCTGGTGAGAAGAAAATCAATTTTGCTGACAGCACAAGCAACTTGTCTCCGATACTATCGTCCTTACTTGTTGAAGGAATTGCTCAGAATACGAGTGGCAGTCTATCTGTGCTTGGGAGTGGTGATGTTCAGGCTTCTGGATCACCAATTGATAGGGCAATTCTGCATTGGGGAGTCAAGCTGGGAATGAATTTTGATGATATAATGTCTCAGTCTCCAGTTTTGCAAGTTTTGCTATTCAGTTCAGAGAAAAAACGAGGTGGTGTTGCACTTAATCTGACACATGGTCGAGTTCATGTACACTGGAAAGGGGCAGCTGAAGGAGTCTTGGCCTCATGTACAAGATACATTGGGGCTAATGATCAGGTTTTACCAATGGATGATGAGAAGTTAACATTTTTTCAAAAAGCTGTCGAGGATATGGCTTCTGGAGGTTTGCATTGCGTTGCTATTGCATATAGATCACTTGAATTGGATAATGTTCTAATCAATAGTAATGGACAACTAGCACAGTGGGAACTACCTGAGGATGACCTCATTTTACTAGCTATTGTTGGTATGAAGGATGATAGTCAACCGGGGATCAAGGACTCGGTGGAAATATTGCAAAGAGCTGGCATTAAGGTACGCCTTGTTACGCATGACAATCCTCAAACTGCAAAAGCAATTGCTAAGGAATGTAGCATACTTGCTTCTGATGGGTCAGATGTTAGTGAGGAAAATCTTATTGAAGGAAAAGTGTTCCGAGAACTTTCTGATAGTCAGAGAGAAGGATTAGCAGAGAAGATTTTGGTAATGGCACGGTCTTCCCCCAATGACAAGCTTTTGCTTGTGCGAGCACTGCAGAAAAGAGGAAAGATTGTTGCTGTCACTGGATATGCCAGTAATGATGCTCATGCACTACATGAGGCCGACATTGGTCTTGCTATGGGTATTCAAAGGACTGAAGTTGTTAAAGAGAGTTCAGATATCATAATCTTGGATGACAATTTTGCTACAGTAGCCAAGTGTTTTAGATGGGGACGATCGATGCATGAAAAGGTTCTGAAAGTTATGCAGCAGCAACTTACAGCCAATATTGTAGCAGTAACCATAAACTGCATGGCGGCAGTTTACTATCGTTACATCCCGCTCAATGCTGTGCAGTTTGTGTGGGTGAATCTTATCATATTTGGTCTTGGACCACTAGCACTGGCTACTGAATCTCCGGCTGATCACCTGATGAACGTACCACCTATTGACCGAGGACAAGCTCTTATAAAATATATTCAGTGGAAGAGACTGTTGACACAGGTTCTGTACCAAATTATTGCCCTGCTTGTCATCAATTTTCAAGGAGGGAGTTTACTGCAAAATTATACCAGAGACCATGCCACAAAAGTGAAGAATACAATGATATTCAACACATTTGTTGTTTGTCAGATTTCCATTGAATTCGGAGTTCGAAAGACTGGTATAGTGGACCATCCTTTGAAATGGATCACTGCTAACTCTGTGTTTCTGGGAATAGTTGGAATAATTCTTTTGATTCAGTTTATCATCATTGAGTTTCTTGGAAAGGCGTTTTTCATAGTCAGGCTTGACTGGAAAGAGTGGCAGTTTTCGCTGACTCTTGGCATTGTCGAGTTGTTGTTTGCACTGCTTCTATTTCTGAAGCACCTGGTACAAAGGAATCATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1026

Amino Acids

113.33

Weight (kDa)

8.47

Isoelectric Point (pI)

33.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	113 - 175	5.3e-07	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	234 - 325	1.1e-15	P-type ATPase actuator domain
Cation_ATPase	PF13246	490 - 658	1.1e-25	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	647 - 771	9e-07	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	842 - 1012	4.2e-25	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	30, 2657
AarI	CACCTGC	1 cut(s)	1018
Acc36I	ACCTGC	1 cut(s)	1018
AccBSI	CCGCTC	1 cut(s)	2530
AccI	GTMKAC	1 cut(s)	724
AciI	CCGC	5 cut(s)	221, 415, 1300, 2504, 2528
AclWI	GGATC	6 cut(s)	75, 439, 515, 1546, 1988, 2885
AcsI	RAATTY	4 cut(s)	425, 975, 1588, 2831
AcuI	CTGAAG	5 cut(s)	1221, 1245, 1737, 2364, 3071
AdeI	CACNNNGTG	2 cut(s)	586, 1349
AfiI	CCNNNNNNNGG	5 cut(s)	154, 803, 1027, 1154, 1299
AflII	CTTAAG	1 cut(s)	776
AflIII	ACRYGT	1 cut(s)	473
AgeI	ACCGGT	2 cut(s)	53, 87
AhdI	GACNNNNNGTC	1 cut(s)	1683
AhlI	ACTAGT	1 cut(s)	142
AjnI	CCWGG	2 cut(s)	1153, 3057
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AleI	CACNNNNGTG	1 cut(s)	2777
Alw21I	GWGCWC	2 cut(s)	199, 2239
Alw26I	GTCTC	9 cut(s)	44, 554, 1107, 1262, 1449, 1611, 1617, 2671, 2757
AlwI	GGATC	6 cut(s)	75, 439, 515, 1546, 1988, 2885
AlwNI	CAGNNNCTG	1 cut(s)	2695
AoxI	GGCC	5 cut(s)	1304, 1326, 1392, 1728, 2307
ApeKI	GCWGC	9 cut(s)	176, 218, 331, 605, 608, 1082, 1712, 2455, 2458
ApoI	RAATTY	4 cut(s)	425, 975, 1588, 2831
AsiGI	ACCGGT	2 cut(s)	53, 87
Asp700I	GAANNNNTTC	2 cut(s)	1230, 2439
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	4 cut(s)	56, 793, 2579, 2860
AsuC2I	CCSGG	1 cut(s)	1977
AsuII	TTCGAA	1 cut(s)	2842
AvaII	GGWCC	4 cut(s)	56, 793, 2579, 2860
AxyI	CCTNAGG	1 cut(s)	1923
BaeI	ACNNNNGTAYC	2 cut(s)	1442, 1475
BbsI	GAAGAC	2 cut(s)	470, 2196
Bbv12I	GWGCWC	2 cut(s)	199, 2239
BbvI	GCAGC	9 cut(s)	188, 205, 343, 595, 617, 1069, 1724, 2467, 2470
BccI	CCATC	7 cut(s)	389, 538, 570, 797, 2090, 2409, 2871
BceAI	ACGGC	1 cut(s)	1239
BciT130I	CCWGG	2 cut(s)	1155, 3059
BclI	TGATCA	2 cut(s)	1759, 2611
BcnI	CCSGG	1 cut(s)	1977
BcoDI	GTCTC	9 cut(s)	44, 554, 1107, 1262, 1449, 1611, 1617, 2671, 2757
BcuI	ACTAGT	1 cut(s)	142
BfaI	CTAG	4 cut(s)	143, 1904, 1943, 2585
BfmI	CTRYAG	3 cut(s)	329, 2240, 2394
BfrI	CTTAAG	1 cut(s)	776
BfuAI	ACCTGC	1 cut(s)	1018
Bme1390I	CCNGG	3 cut(s)	1155, 1977, 3059
Bme18I	GGWCC	4 cut(s)	56, 793, 2579, 2860
BmeRI	GACNNNNNGTC	1 cut(s)	1683
BmgT120I	GGNCC	4 cut(s)	56, 793, 2579, 2860
BmiI	GGNNCC	2 cut(s)	795, 890
BmrFI	CCNGG	3 cut(s)	1155, 1977, 3059
BmrI	ACTGGG	1 cut(s)	957
BmsI	GCATC	4 cut(s)	313, 1330, 2278, 2418
BmuI	ACTGGG	1 cut(s)	957
BoxI	GACNNNNGTC	1 cut(s)	2316
BpiI	GAAGAC	2 cut(s)	470, 2196
BpmI	CTGGAG	3 cut(s)	876, 1599, 1848
Bpu10I	CCTNAGC	1 cut(s)	2070
Bpu14I	TTCGAA	1 cut(s)	2842
BpuMI	CCSGG	1 cut(s)	1977
Bsa29I	ATCGAT	1 cut(s)	2426
BsaI	GGTCTC	2 cut(s)	44, 2757
BsaJI	CCNNGG	5 cut(s)	817, 1293, 1323, 1976, 2641
BsaWI	WCCGGW	2 cut(s)	53, 87
BsaXI	ACNNNNNCTCC	2 cut(s)	2587, 2617
Bsc4I	CCNNNNNNNGG	5 cut(s)	154, 803, 1027, 1154, 1299
Bse118I	RCCGGY	2 cut(s)	53, 87
Bse21I	CCTNAGG	1 cut(s)	1923
Bse3DI	GCAATG	6 cut(s)	46, 119, 465, 1191, 1342, 1837
BseBI	CCWGG	2 cut(s)	1155, 3059
BseCI	ATCGAT	1 cut(s)	2426
BseDI	CCNNGG	5 cut(s)	817, 1293, 1323, 1976, 2641
BseGI	GGATG	8 cut(s)	406, 581, 1783, 1933, 1969, 2386, 2523, 2863
BseLI	CCNNNNNNNGG	5 cut(s)	154, 803, 1027, 1154, 1299
BseMI	GCAATG	6 cut(s)	46, 119, 465, 1191, 1342, 1837
BseMII	CTCAG	7 cut(s)	630, 994, 1273, 1380, 1496, 1622, 1914
BseRI	GAGGAG	1 cut(s)	322
BseXI	GCAGC	9 cut(s)	188, 205, 343, 595, 617, 1069, 1724, 2467, 2470
BseYI	CCCAGC	2 cut(s)	571, 1579
BsgI	GTGCAG	1 cut(s)	2561
Bsh1285I	CGRYCG	1 cut(s)	2426
BshFI	GGCC	5 cut(s)	1306, 1328, 1394, 1730, 2309
BshTI	ACCGGT	2 cut(s)	53, 87
BshVI	ATCGAT	1 cut(s)	2426
BsiEI	CGRYCG	1 cut(s)	2426
BsiHKAI	GWGCWC	2 cut(s)	199, 2239
BsiSI	CCGG	4 cut(s)	54, 88, 1976, 2606
BslFI	GGGAC	2 cut(s)	779, 2433
BslI	CCNNNNNNNGG	5 cut(s)	154, 803, 1027, 1154, 1299
BsmAI	GTCTC	9 cut(s)	44, 554, 1107, 1262, 1449, 1611, 1617, 2671, 2757
BsmBI	CGTCTC	1 cut(s)	1262
BsmFI	GGGAC	2 cut(s)	779, 2433
BsnI	GGCC	5 cut(s)	1306, 1328, 1394, 1730, 2309
Bso31I	GGTCTC	2 cut(s)	44, 2757
Bsp119I	TTCGAA	1 cut(s)	2842
Bsp1286I	GDGCHC	2 cut(s)	199, 2239
Bsp1407I	TGTACA	3 cut(s)	492, 1696, 1736
Bsp19I	CCATGG	1 cut(s)	1323
BspACI	CCGC	5 cut(s)	221, 415, 1300, 2504, 2528
BspANI	GGCC	5 cut(s)	1306, 1328, 1394, 1730, 2309
BspCNI	CTCAG	7 cut(s)	631, 993, 1272, 1381, 1495, 1621, 1915
BspDI	ATCGAT	1 cut(s)	2426
BspLI	GGNNCC	2 cut(s)	795, 890
BspMAI	CTGCAG	2 cut(s)	333, 2244
BspMI	ACCTGC	1 cut(s)	1018
BspPI	GGATC	6 cut(s)	75, 439, 515, 1546, 1988, 2885
BspT104I	TTCGAA	1 cut(s)	2842
BspTI	CTTAAG	1 cut(s)	776
BspTNI	GGTCTC	2 cut(s)	44, 2757
BsrBI	CCGCTC	1 cut(s)	2530
BsrDI	GCAATG	6 cut(s)	46, 119, 465, 1191, 1342, 1837
BsrFI	RCCGGY	2 cut(s)	53, 87
BsrGI	TGTACA	3 cut(s)	492, 1696, 1736
BssAI	RCCGGY	2 cut(s)	53, 87
BssECI	CCNNGG	5 cut(s)	817, 1293, 1323, 1976, 2641
BssT1I	CCWWGG	2 cut(s)	1293, 1323
Bst2UI	CCWGG	2 cut(s)	1155, 3059
Bst4CI	ACNGT	6 cut(s)	631, 1384, 1911, 2202, 2398, 2682
Bst6I	CTCTTC	2 cut(s)	552, 2669
BstAFI	CTTAAG	1 cut(s)	776
BstAPI	GCANNNNNTGC	2 cut(s)	1289, 1630
BstAUI	TGTACA	3 cut(s)	492, 1696, 1736
BstBI	TTCGAA	1 cut(s)	2842
BstC8I	GCNNGC	5 cut(s)	99, 174, 1308, 2014, 2235
BstDEI	CTNAG	9 cut(s)	191, 639, 980, 1259, 1389, 1482, 1608, 1923, 2070
BstDSI	CCRYGG	2 cut(s)	817, 1323
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstF5I	GGATG	8 cut(s)	406, 581, 1783, 1933, 1969, 2386, 2523, 2863
BstHHI	GCGC	1 cut(s)	81
BstMAI	GTCTC	9 cut(s)	44, 554, 1107, 1262, 1449, 1611, 1617, 2671, 2757
BstMCI	CGRYCG	1 cut(s)	2426
BstNI	CCWGG	2 cut(s)	1155, 3059
BstNSI	RCATGY	1 cut(s)	477
BstPAI	GACNNNNGTC	1 cut(s)	2316
BstSCI	CCNGG	3 cut(s)	1153, 1975, 3057
BstSFI	CTRYAG	3 cut(s)	329, 2240, 2394
BstV1I	GCAGC	9 cut(s)	188, 205, 343, 595, 617, 1069, 1724, 2467, 2470
BstV2I	GAAGAC	2 cut(s)	470, 2196
Bsu15I	ATCGAT	1 cut(s)	2426
Bsu36I	CCTNAGG	1 cut(s)	1923
BsuRI	GGCC	5 cut(s)	1306, 1328, 1394, 1730, 2309
BsuTUI	ATCGAT	1 cut(s)	2426
BtgI	CCRYGG	2 cut(s)	817, 1323
BtsCI	GGATG	8 cut(s)	406, 581, 1783, 1933, 1969, 2386, 2523, 2863
BtsI	GCAGTG	4 cut(s)	934, 2237, 2880, 3035
BveI	ACCTGC	1 cut(s)	1018
Cac8I	GCNNGC	5 cut(s)	99, 174, 1308, 2014, 2235
CaiI	CAGNNNCTG	1 cut(s)	2695
CfoI	GCGC	1 cut(s)	81
Cfr10I	RCCGGY	2 cut(s)	53, 87
Cfr13I	GGNCC	4 cut(s)	56, 793, 2579, 2860
ClaI	ATCGAT	1 cut(s)	2426
CpoI	CGGWCCG	1 cut(s)	56
CseI	GACGC	1 cut(s)	103
CsiI	ACCWGGT	1 cut(s)	3057
CspAI	ACCGGT	2 cut(s)	53, 87
CspI	CGGWCCG	1 cut(s)	56
DdeI	CTNAG	9 cut(s)	191, 639, 980, 1259, 1389, 1482, 1608, 1923, 2070
DraIII	CACNNNGTG	2 cut(s)	586, 1349
DriI	GACNNNNNGTC	1 cut(s)	1683
Eam1104I	CTCTTC	2 cut(s)	552, 2669
Eam1105I	GACNNNNNGTC	1 cut(s)	1683
EarI	CTCTTC	2 cut(s)	552, 2669
Eco130I	CCWWGG	2 cut(s)	1293, 1323
Eco147I	AGGCCT	1 cut(s)	1394
Eco31I	GGTCTC	2 cut(s)	44, 2757
Eco32I	GATATC	1 cut(s)	2368
Eco47I	GGWCC	4 cut(s)	56, 793, 2579, 2860
Eco57I	CTGAAG	5 cut(s)	1221, 1245, 1737, 2364, 3071
Eco81I	CCTNAGG	1 cut(s)	1923
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	793
EcoRI	GAATTC	2 cut(s)	975, 2831
EcoRII	CCWGG	2 cut(s)	1153, 3057
EcoRV	GATATC	1 cut(s)	2368
EcoT14I	CCWWGG	2 cut(s)	1293, 1323
EcoT22I	ATGCAT	1 cut(s)	2433
ErhI	CCWWGG	2 cut(s)	1293, 1323
Esp3I	CGTCTC	1 cut(s)	1262
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	2 cut(s)	779, 2433
FauI	CCCGC	1 cut(s)	2535
FauNDI	CATATG	2 cut(s)	669, 1096
FbaI	TGATCA	2 cut(s)	1759, 2611
FblI	GTMKAC	1 cut(s)	724
FokI	GGATG	8 cut(s)	413, 588, 1790, 1940, 1976, 2393, 2510, 2850
FspBI	CTAG	4 cut(s)	143, 1904, 1943, 2585
GlaI	GCGC	1 cut(s)	80
GsaI	CCCAGC	2 cut(s)	575, 1583
GsuI	CTGGAG	3 cut(s)	876, 1599, 1848
HaeIII	GGCC	5 cut(s)	1306, 1328, 1394, 1730, 2309
HapII	CCGG	4 cut(s)	54, 88, 1976, 2606
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	81
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HincII	GTYRAC	4 cut(s)	725, 1791, 1973, 2685
HindII	GTYRAC	4 cut(s)	725, 1791, 1973, 2685
HindIII	AAGCTT	1 cut(s)	2219
HpaI	GTTAAC	1 cut(s)	1791
HpaII	CCGG	4 cut(s)	54, 88, 1976, 2606
Hpy188III	TCNNGA	6 cut(s)	148, 554, 972, 1148, 1536, 1827
HpyCH4III	ACNGT	6 cut(s)	631, 1384, 1911, 2202, 2398, 2682
HpyCH4IV	ACGT	1 cut(s)	2625
HpyF3I	CTNAG	9 cut(s)	191, 639, 980, 1259, 1389, 1482, 1608, 1923, 2070
HpySE526I	ACGT	1 cut(s)	2625
HspAI	GCGC	1 cut(s)	79
Ksp22I	TGATCA	2 cut(s)	1759, 2611
KspAI	GTTAAC	1 cut(s)	1791
Lsp1109I	GCAGC	9 cut(s)	188, 205, 343, 595, 617, 1069, 1724, 2467, 2470
LweI	GCATC	4 cut(s)	313, 1330, 2278, 2418
MabI	ACCWGGT	1 cut(s)	3057
MaeI	CTAG	4 cut(s)	143, 1904, 1943, 2585
MaeII	ACGT	1 cut(s)	2625
MaeIII	GTNAC	9 cut(s)	134, 821, 850, 943, 1349, 2032, 2266, 2485, 2519
MbiI	CCGCTC	1 cut(s)	2530
MfeI	CAATTG	5 cut(s)	15, 276, 834, 1545, 2064
MhlI	GDGCHC	2 cut(s)	199, 2239
MlyI	GAGTC	5 cut(s)	858, 1581, 1731, 1982, 3001
MmeI	TCCRAC	2 cut(s)	1048, 2890
Mph1103I	ATGCAT	1 cut(s)	2433
MroXI	GAANNNNTTC	2 cut(s)	1230, 2439
MseI	TTAA	9 cut(s)	423, 777, 812, 1037, 1671, 1790, 2019, 2352, 3079
MslI	CAYNNNNRTG	2 cut(s)	927, 2777
MspA1I	CMGCKG	3 cut(s)	608, 1310, 1715
MspCI	CTTAAG	1 cut(s)	776
MspI	CCGG	4 cut(s)	54, 88, 1976, 2606
MspR9I	CCNGG	3 cut(s)	1155, 1977, 3059
MunI	CAATTG	5 cut(s)	15, 276, 834, 1545, 2064
MvaI	CCWGG	2 cut(s)	1155, 3059
NciI	CCSGG	1 cut(s)	1977
NcoI	CCATGG	1 cut(s)	1323
NdeI	CATATG	2 cut(s)	669, 1096
NlaIV	GGNNCC	2 cut(s)	795, 890
NmuCI	GTSAC	5 cut(s)	134, 821, 850, 1349, 2266
NsiI	ATGCAT	1 cut(s)	2433
NspI	RCATGY	1 cut(s)	477
NspV	TTCGAA	1 cut(s)	2842
OliI	CACNNNNGTG	1 cut(s)	2777
PaqCI	CACCTGC	1 cut(s)	1018
PceI	AGGCCT	1 cut(s)	1394
PciI	ACATGT	1 cut(s)	473
PdmI	GAANNNNTTC	2 cut(s)	1230, 2439
PfeI	GAWTC	9 cut(s)	7, 129, 881, 968, 1071, 2557, 2600, 2926, 3070
PinAI	ACCGGT	2 cut(s)	53, 87
Ple19I	CGATCG	1 cut(s)	2426
PleI	GAGTC	5 cut(s)	857, 1580, 1730, 1982, 3001
PpsI	GAGTC	5 cut(s)	857, 1580, 1730, 1982, 3001
PpuMI	RGGWCCY	1 cut(s)	793
PscI	ACATGT	1 cut(s)	473
PshAI	GACNNNNGTC	1 cut(s)	2316
PsiI	TTATAA	2 cut(s)	30, 2657
Psp5II	RGGWCCY	1 cut(s)	793
Psp6I	CCWGG	2 cut(s)	1153, 3057
PspFI	CCCAGC	2 cut(s)	571, 1579
PspGI	CCWGG	2 cut(s)	1153, 3057
PspN4I	GGNNCC	2 cut(s)	795, 890
PspPI	GGNCC	4 cut(s)	56, 793, 2579, 2860
PspPPI	RGGWCCY	1 cut(s)	793
PstI	CTGCAG	2 cut(s)	333, 2244
PstNI	CAGNNNCTG	1 cut(s)	2695
PvuI	CGATCG	1 cut(s)	2426
PvuII	CAGCTG	3 cut(s)	608, 1310, 1715
RseI	CAYNNNNRTG	2 cut(s)	927, 2777
Rsr2I	CGGWCCG	1 cut(s)	56
RsrII	CGGWCCG	1 cut(s)	56
SalI	GTCGAC	1 cut(s)	723
SaqAI	TTAA	9 cut(s)	423, 777, 812, 1037, 1671, 1790, 2019, 2352, 3079
Sau96I	GGNCC	4 cut(s)	56, 793, 2579, 2860
SchI	GAGTC	5 cut(s)	858, 1581, 1731, 1982, 3001
ScrFI	CCNGG	3 cut(s)	1155, 1977, 3059
SduI	GDGCHC	2 cut(s)	199, 2239
SexAI	ACCWGGT	1 cut(s)	3057
SfaNI	GCATC	4 cut(s)	313, 1330, 2278, 2418
SfcI	CTRYAG	3 cut(s)	329, 2240, 2394
SfuI	TTCGAA	1 cut(s)	2842
SinI	GGWCC	4 cut(s)	56, 793, 2579, 2860
SmiMI	CAYNNNNRTG	2 cut(s)	927, 2777
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
SpeI	ACTAGT	1 cut(s)	142
SseBI	AGGCCT	1 cut(s)	1394
SsiI	CCGC	5 cut(s)	221, 415, 1300, 2504, 2528
SspI	AATATT	2 cut(s)	2001, 2476
SspMI	CTAG	4 cut(s)	143, 1904, 1943, 2585
StuI	AGGCCT	1 cut(s)	1394
StyD4I	CCNGG	3 cut(s)	1153, 1975, 3057
StyI	CCWWGG	2 cut(s)	1293, 1323
TaaI	ACNGT	6 cut(s)	631, 1384, 1911, 2202, 2398, 2682
TaiI	ACGT	1 cut(s)	2628
TaqI	TCGA	6 cut(s)	724, 1687, 1812, 2426, 2842, 3021
TaqII	GACCGA	1 cut(s)	2655
TatI	WGTACW	5 cut(s)	492, 962, 1160, 1696, 1736
TauI	GCSGC	2 cut(s)	224, 2507
TfiI	GAWTC	9 cut(s)	7, 129, 881, 968, 1071, 2557, 2600, 2926, 3070
Tru1I	TTAA	9 cut(s)	423, 777, 812, 1037, 1671, 1790, 2019, 2352, 3079
Tru9I	TTAA	9 cut(s)	423, 777, 812, 1037, 1671, 1790, 2019, 2352, 3079
TseFI	GTSAC	5 cut(s)	134, 821, 850, 1349, 2266
TseI	GCWGC	9 cut(s)	176, 218, 331, 605, 608, 1082, 1712, 2455, 2458
Tsp45I	GTSAC	5 cut(s)	134, 821, 850, 1349, 2266
TspGWI	ACGGA	3 cut(s)	122, 806, 1055
Vha464I	CTTAAG	1 cut(s)	776
VpaK11BI	GGWCC	4 cut(s)	56, 793, 2579, 2860
XagI	CCTNNNNNAGG	1 cut(s)	152
XapI	RAATTY	4 cut(s)	425, 975, 1588, 2831
XceI	RCATGY	1 cut(s)	477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2497
XmiI	GTMKAC	1 cut(s)	724
XmnI	GAANNNNTTC	2 cut(s)	1230, 2439
XspI	CTAG	4 cut(s)	143, 1904, 1943, 2585
Zsp2I	ATGCAT	1 cut(s)	2433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.