Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000173

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Reverse (-)

209801 .. 235945

Gene Structure 26145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_173G00435010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGAAGAGACTAAAAAGCTGGGATGGCACGATGTATTCAGCGTTGCTATTGCAGCTGCCATGTTCATTTTTATCACGGTATTATCTAACTATACTCAAGCTCGTCTCCGGCATATGATTATCGGAGAGAAAATGACATACAGAGAATTGAAGGTTATTAGAGCTGGTCGACAAGTTCCGGTTTCTATTTGTGATATTGTTGTGGGTGATGTTATATTCCTTGAGTTTGGTGATGAGGTCCCTGCCGATGGCATTTTAATCCATGGTTGCTTACTTGCAATTGATAAGTCCGAGTCACTGGAGAGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007275 GO:0007338 GO:0008150 GO:0008324 GO:0009555 GO:0009566 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019953 GO:0022414 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

103

Amino Acids

11.52

Weight (kDa)

5.53

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1-E2_ATPase	PF00122	45 - 96	2e-08	P-type ATPase actuator domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	151
AluBI	AGCT	4 cut(s)	19, 56, 101, 164
AluI	AGCT	4 cut(s)	19, 56, 101, 164
Alw26I	GTCTC	2 cut(s)	2, 110
ApeKI	GCWGC	2 cut(s)	53, 56
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	218, 242
AvaII	GGWCC	1 cut(s)	238
BbvI	GCAGC	2 cut(s)	43, 65
BccI	CCATC	2 cut(s)	18, 242
BcoDI	GTCTC	2 cut(s)	2, 110
BisI	GCNGC	2 cut(s)	54, 57
BlsI	GCNGC	2 cut(s)	55, 58
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	240
BpuEI	CTTGAG	2 cut(s)	81, 242
BsaJI	CCNNGG	1 cut(s)	262
BsaWI	WCCGGW	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	43, 65
BseYI	CCCAGC	1 cut(s)	19
BsiSI	CCGG	2 cut(s)	109, 179
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	2 cut(s)	2, 110
BsmBI	CGTCTC	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	224
Bsp19I	CCATGG	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	262
BssT1I	CCWWGG	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	79
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	29
BstMAI	GTCTC	2 cut(s)	2, 110
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 53
BstV1I	GCAGC	2 cut(s)	43, 65
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	238
CviAII	CATG	3 cut(s)	61, 263, 309
CviJI	RGCY	4 cut(s)	19, 56, 101, 164
CviKI_1	RGCY	4 cut(s)	19, 56, 101, 164
Eco130I	CCWWGG	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	262
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	3 cut(s)	64, 266, 312
FaiI	YATR	8 cut(s)	62, 93, 114, 116, 139, 215, 264, 310
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	3 cut(s)	60, 262, 308
FauNDI	CATATG	1 cut(s)	114
FblI	GTMKAC	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	54, 57
FokI	GGATG	1 cut(s)	36
Fsp4HI	GCNGC	2 cut(s)	54, 57
GluI	GCNGC	2 cut(s)	54, 57
GsaI	CCCAGC	1 cut(s)	23
HapII	CCGG	2 cut(s)	109, 179
Hin1II	CATG	3 cut(s)	64, 266, 312
HincII	GTYRAC	1 cut(s)	170
HindII	GTYRAC	1 cut(s)	170
HinfI	GANTC	1 cut(s)	293
HpaII	CCGG	2 cut(s)	109, 179
HphI	GGTGA	2 cut(s)	218, 242
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	2 cut(s)	125, 292
Hpy8I	GTNNAC	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	2 cut(s)	53, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 53
Hsp92II	CATG	3 cut(s)	64, 266, 312
LpnPI	CCDG	6 cut(s)	5, 122, 150, 192, 255, 284
Lsp1109I	GCAGC	2 cut(s)	43, 65
MaeIII	GTNAC	1 cut(s)	294
MboII	GAAGA	1 cut(s)	17
MfeI	CAATTG	1 cut(s)	279
MluCI	AATT	2 cut(s)	146, 279
MlyI	GAGTC	1 cut(s)	302
MnlI	CCTC	1 cut(s)	229
MseI	TTAA	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	2 cut(s)	109, 179
MunI	CAATTG	1 cut(s)	279
MwoI	GCNNNNNNNGC	2 cut(s)	25, 53
NcoI	CCATGG	1 cut(s)	262
NdeI	CATATG	1 cut(s)	114
NlaIII	CATG	3 cut(s)	64, 266, 312
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	294
PkrI	GCNGC	2 cut(s)	55, 58
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
PpuMI	RGGWCCY	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	238
PspPPI	RGGWCCY	1 cut(s)	238
PvuII	CAGCTG	1 cut(s)	56
SalI	GTCGAC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	2 cut(s)	54, 57
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	302
SetI	ASST	6 cut(s)	21, 58, 103, 156, 166, 240
SinI	GGWCC	1 cut(s)	238
SmlI	CTYRAG	2 cut(s)	96, 221
SmoI	CTYRAG	2 cut(s)	96, 221
Sse9I	AATT	2 cut(s)	146, 279
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	79
TaqI	TCGA	1 cut(s)	169
TasI	AATT	2 cut(s)	146, 279
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	1 cut(s)	303
TseFI	GTSAC	1 cut(s)	294
TseI	GCWGC	2 cut(s)	53, 56
Tsp45I	GTSAC	1 cut(s)	294
TspDTI	ATGAA	1 cut(s)	55
TspRI	CASTG	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.