Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

15086117 .. 15114444

Gene Structure 28328 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG087600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCAGCAGCAACTGACAGCCAATATTGTAGCAGTAACCATAAACTGCATGGCGGCAGTTTACTATCGTTACATCCCGCTCAATGCTGTGCAGTTTGTGTGGGTGAATCTTATCATATTTGGTCTTGGACCACTAGCACTGGCTACTGAATCTCCGGCTGATCACCTGATGAACGTACCCCCTATTGACCGAGGACAAACTCTTATAAAATATATTCAGTGGAAGAGACTGTTGACACAGGTTCTGTACCAAATTATTGCCCTGCTTGTCATCAATTTTCAAGGAGGGAGTTTACTGAAAACTTATACCAGAGACCATGCCACCAAAGTGAAAAATACAATGATATTCAACACATTTGTTATTTGTCAGATTTCCATTGAATTTGGAGTTCGAAAGACTGGTATAGTGGACCATCCTTTGAAATGGGTTACTGCTAACTCCATGTTTCTGGGAATAGTGGGAATAATTCTTGTGATTCAGCTTATCATCATTGAGTTTCTTGGGAAGGCGTTTTTCATAGTCAGGCTTGACTGGCAAGAGTGGCAGTTTTTCCCTCACTCTTGGTATTGTCGAGCAGAAACTTTGACAGTAAACGCCATTTCATCGCTGGGATCTGATGGACAAGGTTTCCAACTTTTGAATGCCGAGACATTCAAGCCAGTAGCGGGAAGTGACAATTATCTGATATATGTCCATTGGAGAGAAAGAGCTACGAAATGCACCTTCACAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

244

Amino Acids

27.81

Weight (kDa)

9.05

Isoelectric Point (pI)

18.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_C	PF00689	25 - 181	3.4e-26	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	206
AccBSI	CCGCTC	1 cut(s)	79
AciI	CCGC	3 cut(s)	53, 77, 665
AclWI	GGATC	1 cut(s)	619
AcsI	RAATTY	1 cut(s)	380
AfaI	GTAC	2 cut(s)	177, 248
AfiI	CCNNNNNNNGG	1 cut(s)	665
AgsI	TTSAA	6 cut(s)	281, 349, 380, 421, 640, 655
AleI	CACNNNNGTG	1 cut(s)	326
AluBI	AGCT	2 cut(s)	481, 710
AluI	AGCT	2 cut(s)	481, 710
Alw26I	GTCTC	3 cut(s)	220, 306, 641
AlwI	GGATC	1 cut(s)	619
AlwNI	CAGNNNCTG	2 cut(s)	13, 244
ApeKI	GCWGC	2 cut(s)	4, 7
ApoI	RAATTY	1 cut(s)	380
AspS9I	GGNCC	2 cut(s)	128, 409
AsuHPI	GGTGA	2 cut(s)	115, 155
AsuII	TTCGAA	1 cut(s)	391
AvaII	GGWCC	2 cut(s)	128, 409
BbvI	GCAGC	2 cut(s)	16, 19
BccI	CCATC	2 cut(s)	420, 611
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	3 cut(s)	220, 306, 641
BfaI	CTAG	1 cut(s)	134
BisI	GCNGC	3 cut(s)	5, 8, 54
BlsI	GCNGC	3 cut(s)	6, 9, 55
Bme18I	GGWCC	2 cut(s)	128, 409
BmgT120I	GGNCC	2 cut(s)	128, 409
Bpu14I	TTCGAA	1 cut(s)	391
BsaI	GGTCTC	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	1 cut(s)	665
Bse1I	ACTGG	4 cut(s)	144, 403, 536, 659
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	2 cut(s)	72, 412
BseLI	CCNNNNNNNGG	1 cut(s)	665
BseNI	ACTGG	4 cut(s)	144, 403, 536, 659
BseXI	GCAGC	2 cut(s)	16, 19
BseYI	CCCAGC	1 cut(s)	607
BsgI	GTGCAG	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	665
BsmAI	GTCTC	3 cut(s)	220, 306, 641
BsmI	GAATGC	1 cut(s)	646
Bso31I	GGTCTC	1 cut(s)	306
Bsp119I	TTCGAA	1 cut(s)	391
Bsp143I	GATC	2 cut(s)	160, 611
BspACI	CCGC	3 cut(s)	53, 77, 665
BspPI	GGATC	1 cut(s)	619
BspT104I	TTCGAA	1 cut(s)	391
BspTNI	GGTCTC	1 cut(s)	306
BsrBI	CCGCTC	1 cut(s)	79
BsrI	ACTGG	4 cut(s)	144, 403, 536, 659
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	2 cut(s)	160, 611
Bst4CI	ACNGT	2 cut(s)	231, 589
Bst6I	CTCTTC	1 cut(s)	218
BstBI	TTCGAA	1 cut(s)	391
BstF5I	GGATG	2 cut(s)	72, 412
BstKTI	GATC	2 cut(s)	163, 614
BstMAI	GTCTC	3 cut(s)	220, 306, 641
BstMBI	GATC	2 cut(s)	160, 611
BstMWI	GCNNNNNNNGC	2 cut(s)	532, 541
BstV1I	GCAGC	2 cut(s)	16, 19
BstX2I	RGATCY	1 cut(s)	611
BstXI	CCANNNNNNTGG	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	611
BtgZI	GCGATG	1 cut(s)	588
BtsCI	GGATG	2 cut(s)	72, 412
BtsIMutI	CAGTG	2 cut(s)	137, 224
CaiI	CAGNNNCTG	2 cut(s)	13, 244
Cfr13I	GGNCC	2 cut(s)	128, 409
Csp6I	GTAC	2 cut(s)	176, 247
CviAII	CATG	3 cut(s)	49, 317, 442
CviJI	RGCY	7 cut(s)	20, 143, 158, 481, 526, 658, 710
CviKI_1	RGCY	7 cut(s)	20, 143, 158, 481, 526, 658, 710
CviQI	GTAC	2 cut(s)	176, 247
DpnI	GATC	2 cut(s)	162, 613
DpnII	GATC	2 cut(s)	160, 611
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco31I	GGTCTC	1 cut(s)	306
Eco47I	GGWCC	2 cut(s)	128, 409
FaeI	CATG	3 cut(s)	52, 320, 445
FatI	CATG	3 cut(s)	48, 316, 441
FauI	CCCGC	2 cut(s)	84, 658
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	3 cut(s)	5, 8, 54
FokI	GGATG	2 cut(s)	59, 399
Fsp4HI	GCNGC	3 cut(s)	5, 8, 54
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	3 cut(s)	5, 8, 54
GsaI	CCCAGC	1 cut(s)	611
HapII	CCGG	1 cut(s)	155
Hin1II	CATG	3 cut(s)	52, 320, 445
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HinfI	GANTC	3 cut(s)	106, 149, 475
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	2 cut(s)	115, 155
Hpy166II	GTNNAC	5 cut(s)	61, 234, 293, 409, 592
Hpy188I	TCNGA	4 cut(s)	369, 616, 684, 734
Hpy8I	GTNNAC	5 cut(s)	61, 234, 293, 409, 592
HpyAV	CCTTC	2 cut(s)	499, 733
HpyCH4III	ACNGT	2 cut(s)	231, 589
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	4 cut(s)	4, 48, 91, 720
HpyF10VI	GCNNNNNNNGC	2 cut(s)	532, 541
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	3 cut(s)	52, 320, 445
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	160, 611
Lsp1109I	GCAGC	2 cut(s)	16, 19
MaeI	CTAG	1 cut(s)	134
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	4 cut(s)	34, 68, 427, 671
MalI	GATC	2 cut(s)	162, 613
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	2 cut(s)	160, 611
MboII	GAAGA	1 cut(s)	235
MflI	RGATCY	1 cut(s)	611
MluCI	AATT	5 cut(s)	252, 274, 380, 465, 676
MmeI	TCCRAC	1 cut(s)	655
MnlI	CCTC	3 cut(s)	185, 278, 564
MslI	CAYNNNNRTG	1 cut(s)	326
MspI	CCGG	1 cut(s)	155
Mva1269I	GAATGC	1 cut(s)	646
MwoI	GCNNNNNNNGC	2 cut(s)	532, 541
NdeII	GATC	2 cut(s)	160, 611
NlaIII	CATG	3 cut(s)	52, 320, 445
NmeAIII	GCCGAG	1 cut(s)	670
NmuCI	GTSAC	1 cut(s)	671
NspV	TTCGAA	1 cut(s)	391
OliI	CACNNNNGTG	1 cut(s)	326
PctI	GAATGC	1 cut(s)	646
PfeI	GAWTC	3 cut(s)	106, 149, 475
PkrI	GCNGC	3 cut(s)	6, 9, 55
PsiI	TTATAA	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	607
PspPI	GGNCC	2 cut(s)	128, 409
PstNI	CAGNNNCTG	2 cut(s)	13, 244
PsuI	RGATCY	1 cut(s)	611
RsaI	GTAC	2 cut(s)	177, 248
RsaNI	GTAC	2 cut(s)	176, 247
RseI	CAYNNNNRTG	1 cut(s)	326
SatI	GCNGC	3 cut(s)	5, 8, 54
Sau3AI	GATC	2 cut(s)	160, 611
Sau96I	GGNCC	2 cut(s)	128, 409
SetI	ASST	7 cut(s)	168, 177, 243, 483, 628, 712, 725
SfuI	TTCGAA	1 cut(s)	391
SinI	GGWCC	2 cut(s)	128, 409
SmiMI	CAYNNNNRTG	1 cut(s)	326
Sse9I	AATT	5 cut(s)	252, 274, 380, 465, 676
SsiI	CCGC	3 cut(s)	53, 77, 665
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	1 cut(s)	134
TaaI	ACNGT	2 cut(s)	231, 589
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	391, 571
TaqII	GACCGA	1 cut(s)	204
TasI	AATT	5 cut(s)	252, 274, 380, 465, 676
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	3 cut(s)	106, 149, 475
TscAI	CASTG	2 cut(s)	144, 224
TseFI	GTSAC	1 cut(s)	671
TseI	GCWGC	2 cut(s)	4, 7
Tsp45I	GTSAC	1 cut(s)	671
TspDTI	ATGAA	3 cut(s)	185, 505, 591
TspRI	CASTG	2 cut(s)	144, 224
VpaK11BI	GGWCC	2 cut(s)	128, 409
XapI	RAATTY	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	2 cut(s)	46, 604
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.