Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

17933630 .. 17947416

Gene Structure 13787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG098700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2493 bp

ATGAATCACTCAAGTGGGTTGCCTTGTAATGATGACTTGGAGATCGGTCTGAAGGAGGATCATGTTGAGCGCATGAATCGGTGGACGCAAGCGAAGCTATATCTGAAAGCATTGTACCGATTCAGCCACATACTAGTCCTGAAAAGGGCAGAAGAAAAGAAACATGCAGCACTGAAACTAATTAGAGCACATACCCAAGCCCTACGAGCTGCGGATATCTTAAAAAAAATTGCAGATCATCAAGTGAAAGGGCCTGGTGATGATTTTCCAATTGAACCAGAGACACTTGCTAGTTTGACGAGGAATAGTGATATTGATGCTCTGCAGCGATATGGGGGGAAAGAAGGCTTGGCAGATTTACTGAAAACAAATTTAGACAAGGGAATTGATGGGGGTGATTTGCAAAAGCGGAGAGATAAATTTGGATCAAACAAAAATCCTCCAAAAACAGCAACAAGCCACTGGATATGTCTTTGGAAAGCTCTGTACGATTTCACTCGGATCGTTTTGGTGAATGCTTTTGTGGGTTCTGTTGTGATGGGTATTATGGAAGAGACTAAAAAGGTGGGATGGCACGATGTATTCAGCGTTGCTATTGCAGCTGCCATGTTCATTTTTTTCACAGTCTTATCTAACTATACTCAAGCTCGTCTTCAGCATATAATCATTATCAGGGAGAAAATGAGATGCAGAGAATTATTGAAGGTTATTAGAGCTGATCGACAAGTTCCATTTTCTATTTATGAGATTGTTGTTGGTGATGTTATACCCCTTGAGTCTGGTGATGAGGTCCCTGCTGATGGCATTTTAATCCGTGGTTGCTCATCACTTGCAATTGATAAGTCCAGAGTCACTGGAGAGAGCATGACTTTTGACGAGGATTCAAGGAAACCATTTCTACAGTCTGGCTGGAAAGTAACACAGGGCAGTGCTACTATGCTGGTAACTGGGGTAGGGAAATTTACTGAATTGGGAAGGCTCAGGGCTAGCGCCGATTCAAAAGACACGGAGAAACGGAAGAATAAAACCCACTTGCAGGTGCTTTTAAAGGAGGTTGCTACCTTCATGGGTGCTGTCGGATTCATGGTTGCTGCCATTGTTGCATATTTTGTTTGGATCAGAGGCTTCTTTACTGGTGATAGTTCAAATGGAAGTCGTGAACCTGGAAGTACAGTTGAAGAAGTCATTCGAATTAGTATTATTGCAGTCGCCATTTTTGTCGTTTCATTACCTGAAGTGCTTCCTTTAGCTTTCAACATAAGCCGTCTCAGCTCAATGAAAAAGATGAAGACATACAACATCTCGGTGCGGAGGCCAGCTGTATGTGAAACCATGGCCTTATGCACTGATGTAGTCTGTGACATGACTGGAATTACTTTGGCCAACCTGGAATCAGTTCAAGCAGGGATCAAGGAAATACAAAGAGCTCGCATTAAGGTACGCTTTGTTACGCATGACAATCCTCAAACTGCAAAAGCAATTGCTATGGAATGTGGCATACTTGCTTCTGATGGGTCAGATGCTAGTGAGCTAATTTTTGAAGGAGAAGCGTTCCGACAACGTTCTGATAGTCAGAGAGAAGATTTAGCAGAGAAGATTTTGGTAATGCGACTGTCTACCCCCGATGACAAACTTTTGCTTGTGCAAGCACTGCGGAAAAGAGAAAAGGTTGTTGCTGTCACTGGATCTGTCATTAGTGATGCTGGTGCACTACAAGAGGCCGACATTGGTCTTGCTATGGGTGAACAAGCGGATGAAGTTGCTAAGGAGAGTTCAGATATTATAATCTTGGATGGCAATTTCGCTACTGTAGCCAAGGGTTTCAAATGGGGACGATCTATGCATGAAAAGGTTCTGAGAGTGATGCAGCAGCAACTTACAGCCAATATTGTAGCGGTAACTATAAACTGCTTGGCGGCAGTTTACTATGGTCACATTCCGCTCAATGCTGTGCAGTTTGTGTGGGTGAATGTTATCATATTTGGTCTTGGACCACTAATATTGGCAACTGAATATCCGGCTGAACGCCTGATGGACGAACCCCCTATTGACCGAGGACAACCTCTTATAAAATATATTCGGTGGAAGAGACTGTTGATACAGGTTCTGTACCAAATTATTGCCCTGCTTGTCATCAATTTTCAAGGAGGGAGTTTACTGAAAAATTATACCAGAGACCACGCCATCAAAGTGAAAAATACAATGATATTCAACACATTTGTTATATGTCAGATTTCCATTGAATTCGGAGTTCGAAAGACTGGTATACTGGACCATCCTTTGAAATGGATTACTGCCAACTCCGTGTTTCTGGGAATAGTGGGAATAATTCTTGTGATTCAGTTTATCATCATTGAGTTTCTTGGGAAGGCGTTTTTCGTAGTCAGGCTTGACTGGAAAGAGTGGCAGTTTTCCCTCACTCTTGGAATTGTCGAGTTGTTTTTTGCACTGCTTCTATTCGTAAAGCACTTGACACAAAGGAATCATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

830

Amino Acids

92.77

Weight (kDa)

8.98

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	112 - 173	6.4e-10	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	235 - 329	5.6e-16	P-type ATPase actuator domain
Cation_ATPase_C	PF00689	646 - 816	2.3e-25	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1784, 2069
AarI	CACCTGC	1 cut(s)	1027
Acc36I	ACCTGC	1 cut(s)	1027
AccBSI	CCGCTC	1 cut(s)	1942
AccI	GTMKAC	2 cut(s)	1616, 2266
AciI	CCGC	8 cut(s)	212, 409, 1309, 1654, 1751, 1895, 1916, 1940
AclI	AACGTT	1 cut(s)	1561
AclWI	GGATC	6 cut(s)	66, 433, 509, 1124, 1415, 1693
AcoI	YGGCCR	1 cut(s)	1380
AcsI	RAATTY	4 cut(s)	370, 419, 959, 2243
AcuI	CTGAAG	3 cut(s)	71, 638, 1254
AfaI	GTAC	5 cut(s)	116, 488, 1171, 1440, 2111
AfiI	CCNNNNNNNGG	3 cut(s)	145, 800, 1036
AhlI	ACTAGT	1 cut(s)	133
AjnI	CCWGG	3 cut(s)	253, 1162, 1386
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AleI	CACNNNNGTG	1 cut(s)	12
Alw21I	GWGCWC	3 cut(s)	190, 1429, 1711
Alw26I	GTCTC	5 cut(s)	275, 548, 1271, 2083, 2169
Alw44I	GTGCAC	1 cut(s)	1707
AlwI	GGATC	6 cut(s)	66, 433, 509, 1124, 1415, 1693
AlwNI	CAGNNNCTG	1 cut(s)	2107
AoxI	GGCC	5 cut(s)	251, 1313, 1335, 1380, 1719
ApaLI	GTGCAC	1 cut(s)	1707
ApeKI	GCWGC	8 cut(s)	167, 209, 325, 599, 602, 1091, 1867, 1870
ApoI	RAATTY	4 cut(s)	370, 419, 959, 2243
Asp700I	GAANNNNTTC	4 cut(s)	1185, 1239, 1395, 1851
AspLEI	GCGC	2 cut(s)	72, 992
AspS9I	GGNCC	4 cut(s)	251, 790, 1991, 2272
AsuHPI	GGTGA	8 cut(s)	269, 407, 523, 770, 794, 1148, 1754, 1978
AsuII	TTCGAA	2 cut(s)	1189, 2254
AsuNHI	GCTAGC	1 cut(s)	986
AvaII	GGWCC	3 cut(s)	790, 1991, 2272
BaeGI	GKGCMC	1 cut(s)	1711
BalI	TGGCCA	1 cut(s)	1382
BanII	GRGCYC	1 cut(s)	1429
BbsI	GAAGAC	2 cut(s)	644, 1295
Bbv12I	GWGCWC	3 cut(s)	190, 1429, 1711
BbvI	GCAGC	8 cut(s)	179, 196, 337, 589, 611, 1078, 1879, 1882
BccI	CCATC	9 cut(s)	383, 532, 564, 794, 1505, 1787, 2026, 2192, 2283
BceAI	ACGGC	1 cut(s)	1248
BciT130I	CCWGG	3 cut(s)	255, 1164, 1388
BcoDI	GTCTC	5 cut(s)	275, 548, 1271, 2083, 2169
BcuI	ACTAGT	1 cut(s)	133
BfaI	CTAG	4 cut(s)	134, 291, 987, 1524
BfmI	CTRYAG	3 cut(s)	323, 899, 1809
BfoI	RGCGCY	1 cut(s)	993
BfuAI	ACCTGC	1 cut(s)	1027
BisI	GCNGC	9 cut(s)	168, 210, 326, 600, 603, 1092, 1868, 1871, 1917
BlsI	GCNGC	9 cut(s)	169, 211, 327, 601, 604, 1093, 1869, 1872, 1918
Bme1390I	CCNGG	3 cut(s)	255, 1164, 1388
Bme18I	GGWCC	3 cut(s)	790, 1991, 2272
BmgT120I	GGNCC	4 cut(s)	251, 790, 1991, 2272
BmiI	GGNNCC	1 cut(s)	792
BmrFI	CCNGG	3 cut(s)	255, 1164, 1388
BmrI	ACTGGG	1 cut(s)	957
BmsI	GCATC	5 cut(s)	307, 677, 1510, 1690, 1854
BmtI	GCTAGC	1 cut(s)	990
BmuI	ACTGGG	1 cut(s)	957
BoxI	GACNNNNGTC	1 cut(s)	1728
BpiI	GAAGAC	2 cut(s)	644, 1295
BpmI	CTGGAG	1 cut(s)	876
Bpu10I	CCTNAGC	2 cut(s)	980, 1764
Bpu14I	TTCGAA	2 cut(s)	1189, 2254
BpuEI	CTTGAG	2 cut(s)	627, 794
BsaI	GGTCTC	1 cut(s)	2169
BsaJI	CCNNGG	4 cut(s)	814, 1332, 1815, 2053
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 800, 1036
Bse1I	ACTGG	9 cut(s)	467, 859, 952, 1138, 1372, 1687, 2266, 2274, 2399
BseBI	CCWGG	3 cut(s)	255, 1164, 1388
BseDI	CCNNGG	4 cut(s)	814, 1332, 1815, 2053
BseGI	GGATG	4 cut(s)	575, 1759, 1798, 2275
BseLI	CCNNNNNNNGG	3 cut(s)	145, 800, 1036
BseMII	CTCAG	3 cut(s)	994, 1282, 1847
BseNI	ACTGG	9 cut(s)	467, 859, 952, 1138, 1372, 1687, 2266, 2274, 2399
BseSI	GKGCMC	1 cut(s)	1711
BseXI	GCAGC	8 cut(s)	179, 196, 337, 589, 611, 1078, 1879, 1882
BsgI	GTGCAG	1 cut(s)	1973
BshFI	GGCC	5 cut(s)	253, 1315, 1337, 1382, 1721
BsiHKAI	GWGCWC	3 cut(s)	190, 1429, 1711
BsiSI	CCGG	1 cut(s)	2018
BslFI	GGGAC	2 cut(s)	776, 1845
BslI	CCNNNNNNNGG	3 cut(s)	145, 800, 1036
BsmAI	GTCTC	5 cut(s)	275, 548, 1271, 2083, 2169
BsmBI	CGTCTC	1 cut(s)	1271
BsmFI	GGGAC	2 cut(s)	776, 1845
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	5 cut(s)	253, 1315, 1337, 1382, 1721
Bso31I	GGTCTC	1 cut(s)	2169
Bsp119I	TTCGAA	2 cut(s)	1189, 2254
Bsp1286I	GDGCHC	3 cut(s)	190, 1429, 1711
Bsp19I	CCATGG	1 cut(s)	1332
BspACI	CCGC	8 cut(s)	212, 409, 1309, 1654, 1751, 1895, 1916, 1940
BspANI	GGCC	5 cut(s)	253, 1315, 1337, 1382, 1721
BspCNI	CTCAG	3 cut(s)	993, 1281, 1848
BspLI	GGNNCC	1 cut(s)	792
BspMAI	CTGCAG	1 cut(s)	327
BspMI	ACCTGC	1 cut(s)	1027
BspOI	GCTAGC	1 cut(s)	990
BspPI	GGATC	6 cut(s)	66, 433, 509, 1124, 1415, 1693
BspT104I	TTCGAA	2 cut(s)	1189, 2254
BspTNI	GGTCTC	1 cut(s)	2169
BsrBI	CCGCTC	1 cut(s)	1942
BsrI	ACTGG	9 cut(s)	467, 859, 952, 1138, 1372, 1687, 2266, 2274, 2399
BssECI	CCNNGG	4 cut(s)	814, 1332, 1815, 2053
BssNAI	GTATAC	1 cut(s)	2267
BssT1I	CCWWGG	2 cut(s)	1332, 1815
Bst1107I	GTATAC	1 cut(s)	2267
Bst2UI	CCWGG	3 cut(s)	255, 1164, 1388
Bst4CI	ACNGT	6 cut(s)	625, 903, 1174, 1614, 1810, 2094
Bst6I	CTCTTC	2 cut(s)	546, 2081
BstAPI	GCANNNNNTGC	1 cut(s)	1651
BstBI	TTCGAA	2 cut(s)	1189, 2254
BstC8I	GCNNGC	5 cut(s)	90, 988, 1317, 1429, 1647
BstDEI	CTNAG	4 cut(s)	980, 1268, 1764, 1856
BstDSI	CCRYGG	2 cut(s)	814, 1332
BstF5I	GGATG	4 cut(s)	575, 1759, 1798, 2275
BstH2I	RGCGCY	1 cut(s)	993
BstHHI	GCGC	2 cut(s)	72, 992
BstMAI	GTCTC	5 cut(s)	275, 548, 1271, 2083, 2169
BstMWI	GCNNNNNNNGC	7 cut(s)	94, 206, 599, 1100, 1269, 1651, 1811
BstNI	CCWGG	3 cut(s)	255, 1164, 1388
BstNSI	RCATGY	1 cut(s)	167
BstPAI	GACNNNNGTC	1 cut(s)	1728
BstSCI	CCNGG	3 cut(s)	253, 1162, 1386
BstSFI	CTRYAG	3 cut(s)	323, 899, 1809
BstSLI	GKGCMC	1 cut(s)	1711
BstV1I	GCAGC	8 cut(s)	179, 196, 337, 589, 611, 1078, 1879, 1882
BstV2I	GAAGAC	2 cut(s)	644, 1295
BstX2I	RGATCY	1 cut(s)	1685
BstYI	RGATCY	1 cut(s)	1685
BstZ17I	GTATAC	1 cut(s)	2267
BsuRI	GGCC	5 cut(s)	253, 1315, 1337, 1382, 1721
BtgI	CCRYGG	2 cut(s)	814, 1332
BtsCI	GGATG	4 cut(s)	575, 1759, 1798, 2275
BtsI	GCAGTG	3 cut(s)	934, 1649, 2447
BtsIMutI	CAGTG	8 cut(s)	170, 460, 852, 934, 1344, 1649, 1680, 2447
BveI	ACCTGC	1 cut(s)	1027
Cac8I	GCNNGC	5 cut(s)	90, 988, 1317, 1429, 1647
CaiI	CAGNNNCTG	1 cut(s)	2107
CfoI	GCGC	2 cut(s)	72, 992
Cfr13I	GGNCC	4 cut(s)	251, 790, 1991, 2272
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	5 cut(s)	115, 487, 1170, 1439, 2110
CspCI	CAANNNNNGTGG	2 cut(s)	1983, 2018
CviQI	GTAC	5 cut(s)	115, 487, 1170, 1439, 2110
DdeI	CTNAG	4 cut(s)	980, 1268, 1764, 1856
DraI	TTTAAA	1 cut(s)	1047
EaeI	YGGCCR	1 cut(s)	1380
Eam1104I	CTCTTC	2 cut(s)	546, 2081
EarI	CTCTTC	2 cut(s)	546, 2081
Ecl136II	GAGCTC	1 cut(s)	1427
Eco130I	CCWWGG	2 cut(s)	1332, 1815
Eco24I	GRGCYC	1 cut(s)	1429
Eco31I	GGTCTC	1 cut(s)	2169
Eco32I	GATATC	1 cut(s)	217
Eco47I	GGWCC	3 cut(s)	790, 1991, 2272
Eco53kI	GAGCTC	1 cut(s)	1427
Eco57I	CTGAAG	3 cut(s)	71, 638, 1254
EcoICRI	GAGCTC	1 cut(s)	1427
EcoO109I	RGGNCCY	2 cut(s)	251, 790
EcoRI	GAATTC	1 cut(s)	2243
EcoRII	CCWGG	3 cut(s)	253, 1162, 1386
EcoRV	GATATC	1 cut(s)	217
EcoT14I	CCWWGG	2 cut(s)	1332, 1815
EcoT22I	ATGCAT	1 cut(s)	1845
EcoT38I	GRGCYC	1 cut(s)	1429
ErhI	CCWWGG	2 cut(s)	1332, 1815
Esp3I	CGTCTC	1 cut(s)	1271
FalI	AAGNNNNNCTT	4 cut(s)	636, 668, 1427, 1459
FaqI	GGGAC	2 cut(s)	776, 1845
FblI	GTMKAC	2 cut(s)	1616, 2266
Fnu4HI	GCNGC	9 cut(s)	168, 210, 326, 600, 603, 1092, 1868, 1871, 1917
FokI	GGATG	4 cut(s)	582, 1766, 1805, 2262
FriOI	GRGCYC	1 cut(s)	1429
Fsp4HI	GCNGC	9 cut(s)	168, 210, 326, 600, 603, 1092, 1868, 1871, 1917
FspBI	CTAG	4 cut(s)	134, 291, 987, 1524
GlaI	GCGC	2 cut(s)	71, 991
GluI	GCNGC	9 cut(s)	168, 210, 326, 600, 603, 1092, 1868, 1871, 1917
GsuI	CTGGAG	1 cut(s)	876
HaeII	RGCGCY	1 cut(s)	993
HaeIII	GGCC	5 cut(s)	253, 1315, 1337, 1382, 1721
HapII	CCGG	1 cut(s)	2018
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	2 cut(s)	72, 992
Hin6I	GCGC	2 cut(s)	70, 990
HinP1I	GCGC	2 cut(s)	70, 990
HpaII	CCGG	1 cut(s)	2018
HphI	GGTGA	8 cut(s)	269, 407, 523, 770, 794, 1148, 1754, 1978
Hpy166II	GTNNAC	8 cut(s)	84, 1160, 1617, 1709, 1745, 1924, 2156, 2267
Hpy188III	TCNNGA	3 cut(s)	139, 846, 1157
Hpy8I	GTNNAC	8 cut(s)	84, 1160, 1617, 1709, 1745, 1924, 2156, 2267
HpyAV	CCTTC	7 cut(s)	46, 338, 697, 969, 1072, 1535, 2362
HpyCH4III	ACNGT	6 cut(s)	625, 903, 1174, 1614, 1810, 2094
HpyCH4IV	ACGT	1 cut(s)	1561
HpyF10VI	GCNNNNNNNGC	7 cut(s)	94, 206, 599, 1100, 1269, 1651, 1811
HpyF3I	CTNAG	4 cut(s)	980, 1268, 1764, 1856
HpySE526I	ACGT	1 cut(s)	1561
HspAI	GCGC	2 cut(s)	70, 990
Lsp1109I	GCAGC	8 cut(s)	179, 196, 337, 589, 611, 1078, 1879, 1882
LweI	GCATC	5 cut(s)	307, 677, 1510, 1690, 1854
MaeI	CTAG	4 cut(s)	134, 291, 987, 1524
MaeII	ACGT	1 cut(s)	1561
MaeIII	GTNAC	8 cut(s)	850, 916, 943, 1358, 1447, 1678, 1897, 1931
MbiI	CCGCTC	1 cut(s)	1942
MboII	GAAGA	9 cut(s)	164, 563, 644, 1030, 1190, 1300, 1592, 1606, 2098
MfeI	CAATTG	3 cut(s)	270, 834, 1479
MflI	RGATCY	1 cut(s)	1685
MhlI	GDGCHC	3 cut(s)	190, 1429, 1711
MlsI	TGGCCA	1 cut(s)	1382
MluNI	TGGCCA	1 cut(s)	1382
MlyI	GAGTC	2 cut(s)	785, 858
MmeI	TCCRAC	2 cut(s)	1057, 1579
Mox20I	TGGCCA	1 cut(s)	1382
Mph1103I	ATGCAT	1 cut(s)	1845
MroXI	GAANNNNTTC	4 cut(s)	1185, 1239, 1395, 1851
MscI	TGGCCA	1 cut(s)	1382
MseI	TTAA	5 cut(s)	221, 809, 1046, 1434, 2491
MslI	CAYNNNNRTG	3 cut(s)	12, 1304, 2189
Msp20I	TGGCCA	1 cut(s)	1382
MspA1I	CMGCKG	2 cut(s)	602, 1319
MspI	CCGG	1 cut(s)	2018
MspR9I	CCNGG	3 cut(s)	255, 1164, 1388
MunI	CAATTG	3 cut(s)	270, 834, 1479
Mva1269I	GAATGC	1 cut(s)	520
MvaI	CCWGG	3 cut(s)	255, 1164, 1388
MwoI	GCNNNNNNNGC	7 cut(s)	94, 206, 599, 1100, 1269, 1651, 1811
NcoI	CCATGG	1 cut(s)	1332
NheI	GCTAGC	1 cut(s)	986
NlaIV	GGNNCC	1 cut(s)	792
NmuCI	GTSAC	4 cut(s)	850, 1358, 1678, 1931
NsiI	ATGCAT	1 cut(s)	1845
NspI	RCATGY	1 cut(s)	167
NspV	TTCGAA	2 cut(s)	1189, 2254
OliI	CACNNNNGTG	1 cut(s)	12
PaqCI	CACCTGC	1 cut(s)	1027
PctI	GAATGC	1 cut(s)	520
PdmI	GAANNNNTTC	4 cut(s)	1185, 1239, 1395, 1851
PfeI	GAWTC	9 cut(s)	4, 76, 120, 881, 995, 1080, 1391, 2338, 2482
PkrI	GCNGC	9 cut(s)	169, 211, 327, 601, 604, 1093, 1869, 1872, 1918
PleI	GAGTC	2 cut(s)	784, 857
PpsI	GAGTC	2 cut(s)	784, 857
PpuMI	RGGWCCY	1 cut(s)	790
PshAI	GACNNNNGTC	1 cut(s)	1728
PsiI	TTATAA	2 cut(s)	1784, 2069
Psp124BI	GAGCTC	1 cut(s)	1429
Psp1406I	AACGTT	1 cut(s)	1561
Psp5II	RGGWCCY	1 cut(s)	790
Psp6I	CCWGG	3 cut(s)	253, 1162, 1386
PspGI	CCWGG	3 cut(s)	253, 1162, 1386
PspN4I	GGNNCC	1 cut(s)	792
PspPI	GGNCC	4 cut(s)	251, 790, 1991, 2272
PspPPI	RGGWCCY	1 cut(s)	790
PstI	CTGCAG	1 cut(s)	327
PstNI	CAGNNNCTG	1 cut(s)	2107
PsuI	RGATCY	1 cut(s)	1685
PvuII	CAGCTG	2 cut(s)	602, 1319
RsaI	GTAC	5 cut(s)	116, 488, 1171, 1440, 2111
RsaNI	GTAC	5 cut(s)	115, 487, 1170, 1439, 2110
RseI	CAYNNNNRTG	3 cut(s)	12, 1304, 2189
SacI	GAGCTC	1 cut(s)	1429
SaqAI	TTAA	5 cut(s)	221, 809, 1046, 1434, 2491
SatI	GCNGC	9 cut(s)	168, 210, 326, 600, 603, 1092, 1868, 1871, 1917
Sau96I	GGNCC	4 cut(s)	251, 790, 1991, 2272
SchI	GAGTC	2 cut(s)	785, 858
ScrFI	CCNGG	3 cut(s)	255, 1164, 1388
SduI	GDGCHC	3 cut(s)	190, 1429, 1711
SfaNI	GCATC	5 cut(s)	307, 677, 1510, 1690, 1854
SfcI	CTRYAG	3 cut(s)	323, 899, 1809
SfuI	TTCGAA	2 cut(s)	1189, 2254
SinI	GGWCC	3 cut(s)	790, 1991, 2272
SmiMI	CAYNNNNRTG	3 cut(s)	12, 1304, 2189
SmlI	CTYRAG	3 cut(s)	10, 642, 773
SmoI	CTYRAG	3 cut(s)	10, 642, 773
SpeI	ACTAGT	1 cut(s)	133
SsiI	CCGC	8 cut(s)	212, 409, 1309, 1654, 1751, 1895, 1916, 1940
SspI	AATATT	2 cut(s)	1888, 2001
SspMI	CTAG	4 cut(s)	134, 291, 987, 1524
SstI	GAGCTC	1 cut(s)	1429
StyD4I	CCNGG	3 cut(s)	253, 1162, 1386
StyI	CCWWGG	2 cut(s)	1332, 1815
TaaI	ACNGT	6 cut(s)	625, 903, 1174, 1614, 1810, 2094
TaiI	ACGT	1 cut(s)	1564
TaqI	TCGA	4 cut(s)	721, 1189, 2254, 2433
TaqII	GACCGA	2 cut(s)	35, 2067
TatI	WGTACW	1 cut(s)	1169
TauI	GCSGC	1 cut(s)	1919
TfiI	GAWTC	9 cut(s)	4, 76, 120, 881, 995, 1080, 1391, 2338, 2482
Tru1I	TTAA	5 cut(s)	221, 809, 1046, 1434, 2491
Tru9I	TTAA	5 cut(s)	221, 809, 1046, 1434, 2491
TscAI	CASTG	8 cut(s)	177, 467, 859, 934, 1351, 1656, 1687, 2454
TseFI	GTSAC	4 cut(s)	850, 1358, 1678, 1931
TseI	GCWGC	8 cut(s)	167, 209, 325, 599, 602, 1091, 1867, 1870
Tsp45I	GTSAC	4 cut(s)	850, 1358, 1678, 1931
TspGWI	ACGGA	4 cut(s)	803, 1022, 1030, 2293
TspRI	CASTG	8 cut(s)	177, 467, 859, 934, 1351, 1656, 1687, 2454
VneI	GTGCAC	1 cut(s)	1707
VpaK11BI	GGWCC	3 cut(s)	790, 1991, 2272
XapI	RAATTY	4 cut(s)	370, 419, 959, 2243
XceI	RCATGY	1 cut(s)	167
XmiI	GTMKAC	2 cut(s)	1616, 2266
XmnI	GAANNNNTTC	4 cut(s)	1185, 1239, 1395, 1851
XspI	CTAG	4 cut(s)	134, 291, 987, 1524
Zsp2I	ATGCAT	1 cut(s)	1845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.