Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002885.1

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

45696 .. 50521

Gene Structure 4826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002885.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atgcgtggggtggtacagcaactccagatagttctaatgatggtggagaggcgggaagcggaacaggtggtggaggtgaaagatatgaatatggacaatcttctgtggatggaggattccaatttacctgttaagcatcagttgcatccatatcggtgttcttggtctggagaggagactacaacaccggctcacagaaggatgaatcactcaattgggttgccttataacccaagcaatgacttggagaccggtctgaaggaggatcatgttgagcgcatgaaccggtggacgcaagcgaaactatatctgaaagcattgcaccgattccgtcacacactagtcctgaaaaaggcagaagaaaagaagcaggcagcacggaaactacttagagcacatacccaagccctacgagctgcggctatcttcaaagaagttgcagatcaagtgaaagggtctggagattattttccaattgaaccagatgaacttgctcgtttgacgaggagtagtgatgttgatgctctgcagcaatatggggggaaggaaggcttggcagatttactgaaaacagatttagacaagggaattgatggggatgatttactaaagcggacaattaaatttggatcaaacatatatcctccaaaaacagcaatgagccactggaggagcgggaccttgggctcttcggcgatggcggagatgagatcgaagcagtggcgtcttggtagtgcaatgaagtccatggtcgcctccgtagcccaaaagccaccggagccgctcctctgcttcgatctcatctccgccatcgccgaagagcccaaggtcccgctcctctgttattgtggagatggtgaactgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

288

Amino Acids

32.6

Weight (kDa)

8.25

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
AccBSI	CCGCTC	3 cut(s)	675, 784, 835
AciI	CCGC	9 cut(s)	52, 59, 419, 613, 675, 701, 782, 807, 833
AclWI	GGATC	2 cut(s)	273, 637
AcsI	RAATTY	1 cut(s)	623
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	724
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgeI	ACCGGT	2 cut(s)	251, 285
AgsI	TTSAA	2 cut(s)	430, 479
AhlI	ACTAGT	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	536, 568
AluBI	AGCT	1 cut(s)	416
AluI	AGCT	1 cut(s)	416
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	2 cut(s)	170, 242
AlwI	GGATC	2 cut(s)	273, 637
ApeKI	GCWGC	3 cut(s)	374, 416, 529
ApoI	RAATTY	1 cut(s)	623
AsiGI	ACCGGT	2 cut(s)	251, 285
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	2 cut(s)	678, 829
AsuHPI	GGTGA	1 cut(s)	88
AvaII	GGWCC	2 cut(s)	678, 829
BanII	GRGCYC	2 cut(s)	689, 825
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	3 cut(s)	386, 403, 541
BccI	CCATC	6 cut(s)	34, 103, 587, 691, 818, 848
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BcoDI	GTCTC	2 cut(s)	170, 242
BcuI	ACTAGT	1 cut(s)	340
BfaI	CTAG	1 cut(s)	341
BfmI	CTRYAG	2 cut(s)	527, 863
BisI	GCNGC	5 cut(s)	375, 417, 420, 530, 782
BlsI	GCNGC	5 cut(s)	376, 418, 421, 531, 783
Bme18I	GGWCC	2 cut(s)	678, 829
BmgT120I	GGNCC	2 cut(s)	678, 829
BmiI	GGNNCC	3 cut(s)	679, 780, 831
BmsI	GCATC	3 cut(s)	145, 154, 511
BpmI	CTGGAG	4 cut(s)	8, 189, 480, 688
BsaHI	GRCGYC	1 cut(s)	724
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	3 cut(s)	681, 747, 825
BsaWI	WCCGGW	3 cut(s)	251, 285, 775
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse118I	RCCGGY	3 cut(s)	187, 251, 285
Bse1I	ACTGG	1 cut(s)	671
Bse3DI	GCAATG	4 cut(s)	244, 317, 663, 744
BseDI	CCNNGG	3 cut(s)	681, 747, 825
BseGI	GGATG	4 cut(s)	114, 145, 207, 604
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMI	GCAATG	4 cut(s)	244, 317, 663, 744
BseNI	ACTGG	1 cut(s)	671
BseRI	GAGGAG	5 cut(s)	188, 520, 685, 776, 827
BseXI	GCAGC	3 cut(s)	386, 403, 541
BshTI	ACCGGT	2 cut(s)	251, 285
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	4 cut(s)	188, 252, 286, 776
BslFI	GGGAC	2 cut(s)	691, 815
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmAI	GTCTC	2 cut(s)	170, 242
BsmFI	GGGAC	2 cut(s)	691, 815
Bso31I	GGTCTC	1 cut(s)	242
Bsp1286I	GDGCHC	3 cut(s)	397, 689, 825
Bsp143I	GATC	5 cut(s)	265, 442, 629, 710, 796
Bsp19I	CCATGG	1 cut(s)	747
BspACI	CCGC	9 cut(s)	52, 59, 419, 613, 675, 701, 782, 807, 833
BspLI	GGNNCC	3 cut(s)	679, 780, 831
BspMAI	CTGCAG	1 cut(s)	531
BspPI	GGATC	2 cut(s)	273, 637
BspQI	GCTCTTC	2 cut(s)	694, 813
BspTNI	GGTCTC	1 cut(s)	242
BsrBI	CCGCTC	3 cut(s)	675, 784, 835
BsrDI	GCAATG	4 cut(s)	244, 317, 663, 744
BsrFI	RCCGGY	3 cut(s)	187, 251, 285
BsrI	ACTGG	1 cut(s)	671
BssAI	RCCGGY	3 cut(s)	187, 251, 285
BssECI	CCNNGG	3 cut(s)	681, 747, 825
BssMI	GATC	5 cut(s)	265, 442, 629, 710, 796
BssNI	GRCGYC	1 cut(s)	724
BssT1I	CCWWGG	3 cut(s)	681, 747, 825
Bst4CI	ACNGT	1 cut(s)	864
Bst6I	CTCTTC	2 cut(s)	694, 813
BstACI	GRCGYC	1 cut(s)	724
BstAPI	GCANNNNNTGC	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	297, 372
BstDEI	CTNAG	1 cut(s)	389
BstDSI	CCRYGG	1 cut(s)	747
BstENI	CCTNNNNNAGG	1 cut(s)	350
BstF5I	GGATG	4 cut(s)	114, 145, 207, 604
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	5 cut(s)	268, 445, 632, 713, 799
BstMAI	GTCTC	2 cut(s)	170, 242
BstMBI	GATC	5 cut(s)	265, 442, 629, 710, 796
BstMWI	GCNNNNNNNGC	4 cut(s)	142, 413, 761, 778
BstSFI	CTRYAG	2 cut(s)	527, 863
BstV1I	GCAGC	3 cut(s)	386, 403, 541
BtgI	CCRYGG	1 cut(s)	747
BtgZI	GCGATG	2 cut(s)	710, 796
BtsCI	GGATG	4 cut(s)	114, 145, 207, 604
BtsI	GCAGTG	1 cut(s)	725
BtsIMutI	CAGTG	2 cut(s)	664, 725
Cac8I	GCNNGC	2 cut(s)	297, 372
CfoI	GCGC	1 cut(s)	279
Cfr10I	RCCGGY	3 cut(s)	187, 251, 285
Cfr13I	GGNCC	2 cut(s)	678, 829
CseI	GACGC	2 cut(s)	301, 713
Csp6I	GTAC	1 cut(s)	14
CspAI	ACCGGT	2 cut(s)	251, 285
CviAII	CATG	3 cut(s)	269, 280, 748
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	1 cut(s)	389
DpnI	GATC	5 cut(s)	267, 444, 631, 712, 798
DpnII	GATC	5 cut(s)	265, 442, 629, 710, 796
Eam1104I	CTCTTC	2 cut(s)	694, 813
EarI	CTCTTC	2 cut(s)	694, 813
EciI	GGCGGA	2 cut(s)	716, 796
Eco130I	CCWWGG	3 cut(s)	681, 747, 825
Eco24I	GRGCYC	2 cut(s)	689, 825
Eco31I	GGTCTC	1 cut(s)	242
Eco47I	GGWCC	2 cut(s)	678, 829
Eco57I	CTGAAG	1 cut(s)	278
EcoNI	CCTNNNNNAGG	1 cut(s)	350
EcoO109I	RGGNCCY	2 cut(s)	678, 829
EcoT14I	CCWWGG	3 cut(s)	681, 747, 825
EcoT38I	GRGCYC	2 cut(s)	689, 825
ErhI	CCWWGG	3 cut(s)	681, 747, 825
FaeI	CATG	3 cut(s)	272, 283, 751
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FaqI	GGGAC	2 cut(s)	691, 815
FatI	CATG	3 cut(s)	268, 279, 747
FauI	CCCGC	3 cut(s)	45, 668, 840
Fnu4HI	GCNGC	5 cut(s)	375, 417, 420, 530, 782
FokI	GGATG	4 cut(s)	121, 132, 214, 611
FriOI	GRGCYC	2 cut(s)	689, 825
Fsp4HI	GCNGC	5 cut(s)	375, 417, 420, 530, 782
FspBI	CTAG	1 cut(s)	341
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	5 cut(s)	375, 417, 420, 530, 782
GsuI	CTGGAG	4 cut(s)	8, 189, 480, 688
HapII	CCGG	4 cut(s)	188, 252, 286, 776
HgaI	GACGC	2 cut(s)	301, 713
HhaI	GCGC	1 cut(s)	279
Hin1I	GRCGYC	1 cut(s)	724
Hin1II	CATG	3 cut(s)	272, 283, 751
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HinfI	GANTC	3 cut(s)	116, 205, 327
HpaII	CCGG	4 cut(s)	188, 252, 286, 776
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	291, 860
Hpy188I	TCNGA	2 cut(s)	258, 312
Hpy188III	TCNNGA	4 cut(s)	25, 168, 346, 459
Hpy8I	GTNNAC	2 cut(s)	291, 860
HpyAV	CCTTC	4 cut(s)	192, 253, 538, 542
HpyCH4III	ACNGT	1 cut(s)	864
HpyCH4V	TGCA	5 cut(s)	145, 322, 440, 529, 737
HpyF10VI	GCNNNNNNNGC	4 cut(s)	142, 413, 761, 778
HpyF3I	CTNAG	1 cut(s)	389
Hsp92I	GRCGYC	1 cut(s)	724
Hsp92II	CATG	3 cut(s)	272, 283, 751
HspAI	GCGC	1 cut(s)	277
Kzo9I	GATC	5 cut(s)	265, 442, 629, 710, 796
LguI	GCTCTTC	2 cut(s)	694, 813
LmnI	GCTCC	4 cut(s)	672, 778, 789, 840
Lsp1109I	GCAGC	3 cut(s)	386, 403, 541
LweI	GCATC	3 cut(s)	145, 154, 511
MaeI	CTAG	1 cut(s)	341
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	5 cut(s)	267, 444, 631, 712, 798
MbiI	CCGCTC	3 cut(s)	675, 784, 835
MboI	GATC	5 cut(s)	265, 442, 629, 710, 796
MboII	GAAGA	5 cut(s)	92, 371, 418, 681, 830
MfeI	CAATTG	2 cut(s)	213, 474
MhlI	GDGCHC	3 cut(s)	397, 689, 825
MluCI	AATT	6 cut(s)	121, 213, 474, 588, 618, 623
MseI	TTAA	2 cut(s)	132, 621
MslI	CAYNNNNRTG	1 cut(s)	154
MspI	CCGG	4 cut(s)	188, 252, 286, 776
MunI	CAATTG	2 cut(s)	213, 474
MwoI	GCNNNNNNNGC	4 cut(s)	142, 413, 761, 778
NcoI	CCATGG	1 cut(s)	747
NdeII	GATC	5 cut(s)	265, 442, 629, 710, 796
NlaIII	CATG	3 cut(s)	272, 283, 751
NlaIV	GGNNCC	3 cut(s)	679, 780, 831
NmuCI	GTSAC	1 cut(s)	332
PciSI	GCTCTTC	2 cut(s)	694, 813
PfeI	GAWTC	3 cut(s)	116, 205, 327
PinAI	ACCGGT	2 cut(s)	251, 285
PkrI	GCNGC	5 cut(s)	376, 418, 421, 531, 783
PpuMI	RGGWCCY	2 cut(s)	678, 829
PsiI	TTATAA	1 cut(s)	228
Psp5II	RGGWCCY	2 cut(s)	678, 829
PspN4I	GGNNCC	3 cut(s)	679, 780, 831
PspPI	GGNCC	2 cut(s)	678, 829
PspPPI	RGGWCCY	2 cut(s)	678, 829
PstI	CTGCAG	1 cut(s)	531
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	154
SapI	GCTCTTC	2 cut(s)	694, 813
SaqAI	TTAA	2 cut(s)	132, 621
SatI	GCNGC	5 cut(s)	375, 417, 420, 530, 782
Sau3AI	GATC	5 cut(s)	265, 442, 629, 710, 796
Sau96I	GGNCC	2 cut(s)	678, 829
SduI	GDGCHC	3 cut(s)	397, 689, 825
SetI	ASST	6 cut(s)	69, 78, 130, 418, 683, 831
SfaNI	GCATC	3 cut(s)	145, 154, 511
SfcI	CTRYAG	2 cut(s)	527, 863
SinI	GGWCC	2 cut(s)	678, 829
SmiMI	CAYNNNNRTG	1 cut(s)	154
SpeI	ACTAGT	1 cut(s)	340
Sse9I	AATT	6 cut(s)	121, 213, 474, 588, 618, 623
SsiI	CCGC	9 cut(s)	52, 59, 419, 613, 675, 701, 782, 807, 833
SspMI	CTAG	1 cut(s)	341
StyI	CCWWGG	3 cut(s)	681, 747, 825
TaaI	ACNGT	1 cut(s)	864
TaqI	TCGA	2 cut(s)	713, 795
TasI	AATT	6 cut(s)	121, 213, 474, 588, 618, 623
TauI	GCSGC	2 cut(s)	422, 784
TfiI	GAWTC	3 cut(s)	116, 205, 327
Tru1I	TTAA	2 cut(s)	132, 621
Tru9I	TTAA	2 cut(s)	132, 621
TscAI	CASTG	2 cut(s)	671, 725
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	3 cut(s)	374, 416, 529
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	5 cut(s)	101, 218, 296, 501, 755
TspGWI	ACGGA	3 cut(s)	320, 394, 748
TspRI	CASTG	2 cut(s)	671, 725
VpaK11BI	GGWCC	2 cut(s)	678, 829
XagI	CCTNNNNNAGG	1 cut(s)	350
XapI	RAATTY	1 cut(s)	623
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.