Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

18986996 .. 18998129

Gene Structure 11134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG090400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAATCACTCAAGTGGGTTGCCTTGTAATGATGACTTGGAGATCGGTCTGAAGGAGGATCATGTTGAGCGCATGAATCGGTGGACGCAAGCGAAGCTATATCTGAAAGCATTGTACCGATTCAGCCACATACTAGTCCTGAAAAGGGCAGAAGAAAAGAAACATGCAGCACTGAAACTAATTAGAGCACATACCCAAGCCCTACGAGCTGCGGATATCTTAAAAAAAATTGCAGATCATCAAGTGAAAGGGCCTGGTGATGATTTTCCAATTGAACCAGAGACACTTGCTAGTTTGACGAGGAATAGTGATATTGATGCTCTGCAGCGATATGGGGGGAAAGAAGGCTTGGCAGATTTACTGAAAACAAATTTAGACAAGGGAATTGATGGGGGTGATTTGCAAAAGCGGAGAGATAAATTTGGATCAAACAAAAATCCTCCAAAAACAGCAACAAGCCACTGGATATGTCTTTGGAAAGCTCTGTACGATTTCACTCGGATCGTTTTGGTGAATGCTTTTGTGGGTTCTGTTGTGATGGGTATTATGGAAGAGGAATCAGTTCAAGCAGGGATCAAGGAAATACAAAGAGCTCGCATTAAGTGGGGGTTTGTAACTCCAATGGTGGAGAAAAAAGTGGTGAGTTCTGAAAGACAGTTGTCAGGTCTTGATCAGCAGAAAATAAGTCCAGCGAAAGTCTGGCTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

236

Amino Acids

26.59

Weight (kDa)

9.39

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	112 - 173	9.5e-11	Cation transporter/ATPase, N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	212, 409
AclWI	GGATC	4 cut(s)	66, 433, 509, 581
AcsI	RAATTY	2 cut(s)	370, 419
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	2 cut(s)	116, 488
AfiI	CCNNNNNNNGG	1 cut(s)	145
AgsI	TTSAA	2 cut(s)	275, 566
AhlI	ACTAGT	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	253
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AleI	CACNNNNGTG	1 cut(s)	12
AluBI	AGCT	4 cut(s)	97, 209, 482, 593
AluI	AGCT	4 cut(s)	97, 209, 482, 593
Alw21I	GWGCWC	2 cut(s)	190, 595
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	4 cut(s)	66, 433, 509, 581
AoxI	GGCC	1 cut(s)	251
ApeKI	GCWGC	3 cut(s)	167, 209, 325
ApoI	RAATTY	2 cut(s)	370, 419
Asp700I	GAANNNNTTC	1 cut(s)	561
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	4 cut(s)	269, 407, 523, 652
BanII	GRGCYC	1 cut(s)	595
Bbv12I	GWGCWC	2 cut(s)	190, 595
BbvI	GCAGC	3 cut(s)	179, 196, 337
BccI	CCATC	2 cut(s)	383, 532
BciT130I	CCWGG	1 cut(s)	255
BclI	TGATCA	1 cut(s)	670
BcoDI	GTCTC	1 cut(s)	275
BcuI	ACTAGT	1 cut(s)	133
BfaI	CTAG	2 cut(s)	134, 291
BfmI	CTRYAG	1 cut(s)	323
BisI	GCNGC	3 cut(s)	168, 210, 326
BlsI	GCNGC	3 cut(s)	169, 211, 327
Bme1390I	CCNGG	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	251
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	307
BoxI	GACNNNNGTC	1 cut(s)	658
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	467
BseBI	CCWGG	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	467
BseXI	GCAGC	3 cut(s)	179, 196, 337
BshFI	GGCC	1 cut(s)	253
BsiHKAI	GWGCWC	2 cut(s)	190, 595
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	275
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	1 cut(s)	253
Bsp1286I	GDGCHC	2 cut(s)	190, 595
Bsp143I	GATC	7 cut(s)	42, 58, 235, 425, 501, 573, 670
BspACI	CCGC	2 cut(s)	212, 409
BspANI	GGCC	1 cut(s)	253
BspMAI	CTGCAG	1 cut(s)	327
BspPI	GGATC	4 cut(s)	66, 433, 509, 581
BsrI	ACTGG	1 cut(s)	467
BssMI	GATC	7 cut(s)	42, 58, 235, 425, 501, 573, 670
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	657
Bst6I	CTCTTC	1 cut(s)	546
BstC8I	GCNNGC	3 cut(s)	90, 595, 705
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	7 cut(s)	45, 61, 238, 428, 504, 576, 673
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	7 cut(s)	42, 58, 235, 425, 501, 573, 670
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 206
BstNI	CCWGG	1 cut(s)	255
BstNSI	RCATGY	1 cut(s)	167
BstPAI	GACNNNNGTC	1 cut(s)	658
BstSCI	CCNGG	1 cut(s)	253
BstSFI	CTRYAG	1 cut(s)	323
BstV1I	GCAGC	3 cut(s)	179, 196, 337
BsuRI	GGCC	1 cut(s)	253
BtsIMutI	CAGTG	2 cut(s)	170, 460
Cac8I	GCNNGC	3 cut(s)	90, 595, 705
CfoI	GCGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	251
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	115, 487
CviAII	CATG	3 cut(s)	62, 73, 164
CviQI	GTAC	2 cut(s)	115, 487
DpnI	GATC	7 cut(s)	44, 60, 237, 427, 503, 575, 672
DpnII	GATC	7 cut(s)	42, 58, 235, 425, 501, 573, 670
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Ecl136II	GAGCTC	1 cut(s)	593
Eco24I	GRGCYC	1 cut(s)	595
Eco32I	GATATC	1 cut(s)	217
Eco53kI	GAGCTC	1 cut(s)	593
Eco57I	CTGAAG	1 cut(s)	71
EcoICRI	GAGCTC	1 cut(s)	593
EcoO109I	RGGNCCY	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	253
EcoRV	GATATC	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	595
FaeI	CATG	3 cut(s)	65, 76, 167
FaiI	YATR	9 cut(s)	63, 74, 100, 131, 165, 192, 333, 469, 548
FatI	CATG	3 cut(s)	61, 72, 163
FbaI	TGATCA	1 cut(s)	670
Fnu4HI	GCNGC	3 cut(s)	168, 210, 326
FriOI	GRGCYC	1 cut(s)	595
Fsp4HI	GCNGC	3 cut(s)	168, 210, 326
FspBI	CTAG	2 cut(s)	134, 291
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	3 cut(s)	168, 210, 326
HaeIII	GGCC	1 cut(s)	253
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	3 cut(s)	65, 76, 167
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	4 cut(s)	4, 76, 120, 557
HphI	GGTGA	4 cut(s)	269, 407, 523, 652
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188I	TCNGA	4 cut(s)	51, 105, 501, 649
Hpy188III	TCNNGA	2 cut(s)	139, 668
Hpy8I	GTNNAC	1 cut(s)	84
HpyAV	CCTTC	2 cut(s)	46, 338
HpyCH4III	ACNGT	1 cut(s)	657
HpyCH4V	TGCA	4 cut(s)	167, 233, 325, 403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 206
Hsp92II	CATG	3 cut(s)	65, 76, 167
HspAI	GCGC	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	670
Kzo9I	GATC	7 cut(s)	42, 58, 235, 425, 501, 573, 670
Lsp1109I	GCAGC	3 cut(s)	179, 196, 337
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	2 cut(s)	134, 291
MaeIII	GTNAC	1 cut(s)	613
MalI	GATC	7 cut(s)	44, 60, 237, 427, 503, 575, 672
MboI	GATC	7 cut(s)	42, 58, 235, 425, 501, 573, 670
MboII	GAAGA	2 cut(s)	164, 563
MfeI	CAATTG	1 cut(s)	270
MhlI	GDGCHC	2 cut(s)	190, 595
MluCI	AATT	6 cut(s)	180, 228, 270, 370, 384, 419
MnlI	CCTC	4 cut(s)	49, 294, 450, 547
MroXI	GAANNNNTTC	1 cut(s)	561
MseI	TTAA	3 cut(s)	221, 600, 709
MslI	CAYNNNNRTG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	255
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	520
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	94, 206
NdeII	GATC	7 cut(s)	42, 58, 235, 425, 501, 573, 670
NlaIII	CATG	3 cut(s)	65, 76, 167
NspI	RCATGY	1 cut(s)	167
OliI	CACNNNNGTG	1 cut(s)	12
PctI	GAATGC	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	561
PfeI	GAWTC	4 cut(s)	4, 76, 120, 557
PkrI	GCNGC	3 cut(s)	169, 211, 327
PshAI	GACNNNNGTC	1 cut(s)	658
Psp124BI	GAGCTC	1 cut(s)	595
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspPI	GGNCC	1 cut(s)	251
PstI	CTGCAG	1 cut(s)	327
RsaI	GTAC	2 cut(s)	116, 488
RsaNI	GTAC	2 cut(s)	115, 487
RseI	CAYNNNNRTG	1 cut(s)	12
SacI	GAGCTC	1 cut(s)	595
SaqAI	TTAA	3 cut(s)	221, 600, 709
SatI	GCNGC	3 cut(s)	168, 210, 326
Sau3AI	GATC	7 cut(s)	42, 58, 235, 425, 501, 573, 670
Sau96I	GGNCC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	2 cut(s)	190, 595
SetI	ASST	5 cut(s)	99, 211, 484, 595, 667
SfaNI	GCATC	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SpeI	ACTAGT	1 cut(s)	133
Sse9I	AATT	6 cut(s)	180, 228, 270, 370, 384, 419
SsiI	CCGC	2 cut(s)	212, 409
SspMI	CTAG	2 cut(s)	134, 291
SstI	GAGCTC	1 cut(s)	595
StyD4I	CCNGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	657
TaqII	GACCGA	1 cut(s)	35
TasI	AATT	6 cut(s)	180, 228, 270, 370, 384, 419
TfiI	GAWTC	4 cut(s)	4, 76, 120, 557
Tru1I	TTAA	3 cut(s)	221, 600, 709
Tru9I	TTAA	3 cut(s)	221, 600, 709
TscAI	CASTG	2 cut(s)	177, 467
TseI	GCWGC	3 cut(s)	167, 209, 325
TspDTI	ATGAA	2 cut(s)	17, 89
TspRI	CASTG	2 cut(s)	177, 467
XapI	RAATTY	2 cut(s)	370, 419
XceI	RCATGY	1 cut(s)	167
XcmI	CCANNNNNNNNNTGG	1 cut(s)	696
XmnI	GAANNNNTTC	1 cut(s)	561
XspI	CTAG	2 cut(s)	134, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.