Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

12219608 .. 12231026

Gene Structure 11419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG081600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGATATATTTGGAAGATTTACACACGGTCGAGTTCATGTACACTGGAAAGGGGAAGCTGAAGGAGTCTTAGCCTCATGTACAAGATACATTGGGGCTAATGATCAGGTTTTACCAATGGATGATGATAAGTTAACATTTTTTCAAAAAGCTATCGAGGATATGGCTTCTGGAGGCTTGCATTGCGTTGCTATTGCATATACATCACTTGAATTGGAAAATGTTCTAATCAATAGTAATGGACAACTAGCGCGGTGGGAACTACCCGAGGATGACCTCATTTTACTAGCTATTGTTGGTATTAAGGATGATTGTCAACCGGGGATCAAGGACTCGGTGGAAATATTGCAAAGAGCTGGCATTAAGGTACGCCTTGTTACGCATGACAATCCTCAAACTGCAAAAGCACTTGCTAAGGAATGTAGCATACTTGCTTCTGATGGGTCAGACGCTAGTGAGGAAAATCTTATTGAAGGAAAAGTGTTCCGAGAACTTTCTGATAGTCAGAGAGAAGAATTAGCAGAGAAGATTTTGTTTGTGTGGGTGAATCTTATCATATTTGGTCTTGGACCACTAGCATTGACTACTGAATCTCCGGCTGATCACCTGATGAACGTACCCCCTATTGACCGAGGACAAACTATTATAAAATATATTCAGTGGAAGAGACTGTTGATACAGGTTCTCTACCAAATTATTGCCCTGCTTGTCATCAATTTTCAAGGAGGGAGTTTACTGAAAAATTATACCAGAGACCATGCCACAAAAGTGAAGAATACAATGATATTCAACACATTTGTTGTTTGTCAGATTTCCATTGAATTCGGAGTTCGAAAGACTGGTATAGTGGACCATCCTTTGAAATGGATTACTGCTAACTCTGTGTTTCTGGGAATAGCTGGAATAATTCTTGTGATTCAGTTTATCATCATTGAGTTTCTTGGAAAGGCCTTTTTCATAGTTAGGCTTGACTGGAAAGAGTGGCAGTTTTCGCTGACTCTTGGTATTGTCGAGTTGTTGTTTGCACTGCTTCTATTTCTGAAGCACTTGACACAAAGGAATCATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

356

Amino Acids

40.05

Weight (kDa)

5.83

Isoelectric Point (pI)

25.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase	PF13246	9 - 107	1.7e-15	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	180 - 342	9.4e-23	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	647
AccII	CGCG	1 cut(s)	253
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	1 cut(s)	332
AcsI	RAATTY	1 cut(s)	821
AcuI	CTGAAG	2 cut(s)	81, 1061
AfaI	GTAC	4 cut(s)	42, 82, 369, 618
AgsI	TTSAA	7 cut(s)	146, 212, 473, 722, 790, 821, 862
AleI	CACNNNNGTG	1 cut(s)	767
AluBI	AGCT	5 cut(s)	59, 152, 290, 356, 899
AluI	AGCT	5 cut(s)	59, 152, 290, 356, 899
Alw26I	GTCTC	2 cut(s)	661, 747
AlwI	GGATC	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	1 cut(s)	948
ApoI	RAATTY	1 cut(s)	821
Asp700I	GAANNNNTTC	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	2 cut(s)	569, 850
AsuC2I	CCSGG	1 cut(s)	321
AsuHPI	GGTGA	2 cut(s)	556, 596
AsuII	TTCGAA	1 cut(s)	832
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	2 cut(s)	569, 850
BccI	CCATC	2 cut(s)	434, 861
BclI	TGATCA	2 cut(s)	103, 601
BcnI	CCSGG	1 cut(s)	321
BcoDI	GTCTC	2 cut(s)	661, 747
BfaI	CTAG	4 cut(s)	248, 287, 453, 575
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	2 cut(s)	569, 850
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	569, 850
BmrFI	CCNGG	1 cut(s)	321
BpmI	CTGGAG	1 cut(s)	192
Bpu10I	CCTNAGC	1 cut(s)	414
Bpu14I	TTCGAA	1 cut(s)	832
BpuMI	CCSGG	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	747
BsaJI	CCNNGG	3 cut(s)	267, 320, 631
BsaXI	ACNNNNNCTCC	2 cut(s)	577, 607
Bse1I	ACTGG	3 cut(s)	50, 844, 977
Bse3DI	GCAATG	1 cut(s)	181
BseDI	CCNNGG	3 cut(s)	267, 320, 631
BseGI	GGATG	4 cut(s)	127, 277, 313, 853
BseMI	GCAATG	1 cut(s)	181
BseNI	ACTGG	3 cut(s)	50, 844, 977
Bsh1236I	CGCG	1 cut(s)	253
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	950
BsiEI	CGRYCG	1 cut(s)	31
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	320, 596
BsmAI	GTCTC	2 cut(s)	661, 747
BsnI	GGCC	1 cut(s)	950
Bso31I	GGTCTC	1 cut(s)	747
BsoBI	CYCGRG	1 cut(s)	266
Bsp119I	TTCGAA	1 cut(s)	832
Bsp1407I	TGTACA	2 cut(s)	40, 80
Bsp143I	GATC	3 cut(s)	103, 324, 601
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	1 cut(s)	950
BspFNI	CGCG	1 cut(s)	253
BspPI	GGATC	1 cut(s)	332
BspT104I	TTCGAA	1 cut(s)	832
BspTNI	GGTCTC	1 cut(s)	747
BsrDI	GCAATG	1 cut(s)	181
BsrGI	TGTACA	2 cut(s)	40, 80
BsrI	ACTGG	3 cut(s)	50, 844, 977
BssECI	CCNNGG	3 cut(s)	267, 320, 631
BssMI	GATC	3 cut(s)	103, 324, 601
Bst4CI	ACNGT	2 cut(s)	29, 672
Bst6I	CTCTTC	1 cut(s)	659
BstAUI	TGTACA	2 cut(s)	40, 80
BstBI	TTCGAA	1 cut(s)	832
BstC8I	GCNNGC	2 cut(s)	179, 358
BstDEI	CTNAG	2 cut(s)	70, 414
BstF5I	GGATG	4 cut(s)	127, 277, 313, 853
BstFNI	CGCG	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	3 cut(s)	106, 327, 604
BstMAI	GTCTC	2 cut(s)	661, 747
BstMBI	GATC	3 cut(s)	103, 324, 601
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 991
BstSCI	CCNGG	1 cut(s)	319
BstUI	CGCG	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	950
BtsCI	GGATG	4 cut(s)	127, 277, 313, 853
BtsI	GCAGTG	1 cut(s)	1025
BtsIMutI	CAGTG	3 cut(s)	43, 665, 1025
Cac8I	GCNNGC	2 cut(s)	179, 358
CfoI	GCGC	1 cut(s)	253
Cfr13I	GGNCC	2 cut(s)	569, 850
CseI	GACGC	1 cut(s)	458
Csp6I	GTAC	4 cut(s)	41, 81, 368, 617
CspCI	CAANNNNNGTGG	2 cut(s)	561, 596
CviAII	CATG	4 cut(s)	38, 78, 383, 758
CviQI	GTAC	4 cut(s)	41, 81, 368, 617
DdeI	CTNAG	2 cut(s)	70, 414
DpnI	GATC	3 cut(s)	105, 326, 603
DpnII	GATC	3 cut(s)	103, 324, 601
Eam1104I	CTCTTC	1 cut(s)	659
EarI	CTCTTC	1 cut(s)	659
Eco147I	AGGCCT	1 cut(s)	950
Eco31I	GGTCTC	1 cut(s)	747
Eco47I	GGWCC	2 cut(s)	569, 850
Eco57I	CTGAAG	2 cut(s)	81, 1061
Eco88I	CYCGRG	1 cut(s)	266
EcoRI	GAATTC	1 cut(s)	821
FaeI	CATG	4 cut(s)	41, 81, 386, 761
FatI	CATG	4 cut(s)	37, 77, 382, 757
FbaI	TGATCA	2 cut(s)	103, 601
FokI	GGATG	4 cut(s)	134, 284, 320, 840
FspBI	CTAG	4 cut(s)	248, 287, 453, 575
GlaI	GCGC	1 cut(s)	252
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	950
HapII	CCGG	2 cut(s)	320, 596
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	4 cut(s)	41, 81, 386, 761
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HincII	GTYRAC	2 cut(s)	135, 317
HindII	GTYRAC	2 cut(s)	135, 317
HinfI	GANTC	7 cut(s)	66, 332, 547, 590, 916, 997, 1060
HpaI	GTTAAC	1 cut(s)	135
HpaII	CCGG	2 cut(s)	320, 596
HphI	GGTGA	2 cut(s)	556, 596
Hpy166II	GTNNAC	5 cut(s)	43, 135, 317, 734, 850
Hpy188I	TCNGA	8 cut(s)	439, 448, 488, 499, 507, 810, 827, 1041
Hpy188III	TCNNGA	1 cut(s)	171
Hpy8I	GTNNAC	5 cut(s)	43, 135, 317, 734, 850
HpyAV	CCTTC	2 cut(s)	56, 467
HpyCH4III	ACNGT	2 cut(s)	29, 672
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	5 cut(s)	181, 197, 349, 401, 1025
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 991
HpyF3I	CTNAG	2 cut(s)	70, 414
HpySE526I	ACGT	1 cut(s)	615
Hsp92II	CATG	4 cut(s)	41, 81, 386, 761
HspAI	GCGC	1 cut(s)	251
Ksp22I	TGATCA	2 cut(s)	103, 601
KspAI	GTTAAC	1 cut(s)	135
Kzo9I	GATC	3 cut(s)	103, 324, 601
MaeI	CTAG	4 cut(s)	248, 287, 453, 575
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	3 cut(s)	105, 326, 603
MboI	GATC	3 cut(s)	103, 324, 601
MboII	GAAGA	5 cut(s)	27, 524, 538, 676, 784
MluCI	AATT	8 cut(s)	212, 515, 693, 715, 742, 821, 906, 1066
MlyI	GAGTC	3 cut(s)	75, 326, 991
MnlI	CCTC	9 cut(s)	85, 151, 167, 262, 287, 402, 451, 626, 719
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	3 cut(s)	134, 303, 363
MslI	CAYNNNNRTG	1 cut(s)	767
MspI	CCGG	2 cut(s)	320, 596
MspR9I	CCNGG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	253
MwoI	GCNNNNNNNGC	2 cut(s)	183, 991
NciI	CCSGG	1 cut(s)	321
NdeII	GATC	3 cut(s)	103, 324, 601
NlaIII	CATG	4 cut(s)	41, 81, 386, 761
NspV	TTCGAA	1 cut(s)	832
OliI	CACNNNNGTG	1 cut(s)	767
PceI	AGGCCT	1 cut(s)	950
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	4 cut(s)	547, 590, 916, 1060
PleI	GAGTC	3 cut(s)	74, 326, 991
PpsI	GAGTC	3 cut(s)	74, 326, 991
PsiI	TTATAA	1 cut(s)	647
PspPI	GGNCC	2 cut(s)	569, 850
RsaI	GTAC	4 cut(s)	42, 82, 369, 618
RsaNI	GTAC	4 cut(s)	41, 81, 368, 617
RseI	CAYNNNNRTG	1 cut(s)	767
SaqAI	TTAA	3 cut(s)	134, 303, 363
Sau3AI	GATC	3 cut(s)	103, 324, 601
Sau96I	GGNCC	2 cut(s)	569, 850
SchI	GAGTC	3 cut(s)	75, 326, 991
ScrFI	CCNGG	1 cut(s)	321
SfuI	TTCGAA	1 cut(s)	832
SinI	GGWCC	2 cut(s)	569, 850
SmiMI	CAYNNNNRTG	1 cut(s)	767
Sse9I	AATT	8 cut(s)	212, 515, 693, 715, 742, 821, 906, 1066
SseBI	AGGCCT	1 cut(s)	950
SsiI	CCGC	1 cut(s)	253
SspI	AATATT	1 cut(s)	345
SspMI	CTAG	4 cut(s)	248, 287, 453, 575
StuI	AGGCCT	1 cut(s)	950
StyD4I	CCNGG	1 cut(s)	319
TaaI	ACNGT	2 cut(s)	29, 672
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	4 cut(s)	31, 156, 832, 1011
TaqII	GACCGA	1 cut(s)	645
TasI	AATT	8 cut(s)	212, 515, 693, 715, 742, 821, 906, 1066
TatI	WGTACW	2 cut(s)	40, 80
TfiI	GAWTC	4 cut(s)	547, 590, 916, 1060
Tru1I	TTAA	3 cut(s)	134, 303, 363
Tru9I	TTAA	3 cut(s)	134, 303, 363
TscAI	CASTG	3 cut(s)	50, 665, 1032
TspDTI	ATGAA	3 cut(s)	26, 626, 946
TspRI	CASTG	3 cut(s)	50, 665, 1032
VpaK11BI	GGWCC	2 cut(s)	569, 850
XapI	RAATTY	1 cut(s)	821
XmnI	GAANNNNTTC	1 cut(s)	222
XspI	CTAG	4 cut(s)	248, 287, 453, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.