Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

15115588 .. 15132540

Gene Structure 16953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG087700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2526 bp

ATGTGTACTTCTCGAGATCCTCATGACAAGGCACTTTTCTTGCAATCTGTTGGAAAGATCGTCCCTCGCATGAGTCGCATTGACAAATTTTCTAGATCTTCCCTCGCTTCACACGAAGAAGCTCACAGAAGCATGAGTCACTCAAGTGAGTTGCCTTATAACCCAAGCAATGATTTGGAGGCCGGTCTGAAGGAGGTTCGTGTTGAGCGCGTGAACCGTTGGGTGCTAGTGAAACTATATCTGAAACCATTGTATCGATTCCGCCACACACTAGTCCTGAAAAGGGCAGAAGAAAAGAAGCAGGCAGCACGGAAACAACTTATTAGAGCACACACCCAAGCCCTACGAGCTGTGGCTATCTTCAAACAAGTTGCAGATCAAGTGAAAGGGCCTGGTGATGATTTTCCAATTGAACCAGAGACACTTGCTAGTTTGACGAGGAATAGTGATGTTGATGCTCTGCAGCGATATGGGGGGAAAGAAGGCTTGGCAGATTTACTGAAAACAAATTTAGACAAGGGAATTGATGGGGGTGATTTACAAAAGCGGATAGACAAATTTGGATCAAACAAAAATCCTCCAAAAACAGCAACGAGCCACTGGACATGTCTTTGGGAAGCTCTGTACGATTTTACTCGGATCGTTTTGGTGATTGCTTTTGTGGGTTCTGTTGTGATGGGTATTATGGAAGAGACTAAAAAGCTGGGATGGCACGATGTATTCAGCGTTGCTATTGCAGCTGCCATGTTCATTTTTGTCACAGTCTTATCTAACTATACTCAAGCTCGTCTTCAGCATATGATCATTATCAGGGAGAAAATGAGATGCAGAGAATTGAAGGTTATTAGAGCTGGTCGACAAGATCCAGTATCTATTTGTGATATTGTTGTTGGTGATGTTATACCCCTTGAGTTGGGTGAAGAGGTCCCTGCTGATGGCATTTTAATCCGTGGTTGCTCACTTGCAATTGATAAGTCCAGAGTCACTGGAGAGAGCATGATCTTTCACGAGGATTCAAGGAAACCATTTCTACAGTCTGGCTGGAAAGTAGCAGATGGCAGTGCTACTATGCTGGTAACTGGGGTAGGGAAATTTACTGAATTGGGAAGGCTCAGGGCTAACGCCGATTCAAAACACACGGAGAAACGGAAGAATAAAACCCACTTGCAGGTGCTTTTAAAGGAGGTTGCTACCTTCATGGGTGCTGTGGGATTCATGGTTGCTGCCATTGTTGCATATTTTGTTTGGATCAGAGACTTTTTTACTGGTGATAGTTCAAATGGAAGTCGTGAACCTGGAAGTACACTTGAAGAAGTCATTCGAATTAGTATTATTGCAGTCGCCATTTTTGTCGTTTCATTACCTGAAGTGCTTCCTTTAGCTTTCAACATAAGCCGTCTCAGCTCAATGAAAAAGATGAAGGCAGACAACATCTTGGTGCGGAGGCCAGCTGTATGTGAAACCATGGCCTTATGCAATGATGCTGTCTGTGACATGACTGGAATTACTTTGGACAACGTGTATGATGTTCAAGCGGGGATCAAGGAAATGCAAAGAGCTGGCATTAAGGTACGCTTTGTTACGCATGACAATCCTCAAACTGCAAAAGCAATTGCTATGGAATGTGGCATACTTGCTTCTGATGGGTCAGATGCTAGTGAGGTAATTTTTGAAGGAGAAGCGTTCCGACGACTTTCTGATAGTCAGAGAGAAGATTTAGCAGAGAAGATTTTGGTAATGCCACGGTCTACCCCCGATGACAAACTTTTGCTTGTGCAAGCACTGCGGAAAAGAGGAAAGGTTGTTACTGTCACTGGATCTGTCAGTAGTGATGTTGGTGCACTACAAGAGGGTTTCAGATGGGGACGATCTATGCATGAAAAGGTTCTGAGAGTTATGCAGCAGCAACTGACAGCCAATATTGTAGCAGTAACTATAAACTGCTTGGCGGCAGTTTACTATCGTCACATTCCGCTCAATGCTGTGCAGTTTGTGTGGGTGAATGTTATCATATTTGCTCTTGGACCACTAGTATTGGCTACTGAATATCCGGCTGAGCGCCTGATGGACGAACCCCCTATTGACCGAGGACAACCTCTTATAAAATATATTCGGTGGAAGAGACTGTTGATACAGGTTCTGTACCAAATTATTGCCCTGCTTGTCATCAATTTTCAAGGAGGGAGTTTACTGAAAAATTATACCAGAGACCATGCCACCAAAGTGAAAAATACAATGATATTCAACACATTTGTTATATGTCAGATTTCCATTGAATTTGGAGTTCGAAAGACTGGTATAGTGGACCATCCTTTGAAATGGATTACTGCTAACTCTGTGTTTCTGGGAATAGTGGGAATAATTCTTGTGATTCAGTTTATCATCATAGAGTTTCTTGGGAAGGCATTTTTCATAGTCAGGCTTGACTGGAAAGAGTGGCAGTTTTCCCTCACTCTGGGTATTGTTGAGTTGTTTTTTGCACTGCTTTTATTCGTGAAGCACTTGACACAAAGGAATCATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

841

Amino Acids

94.41

Weight (kDa)

9.32

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	158 - 220	9.9e-11	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	277 - 372	1e-15	P-type ATPase actuator domain
Cation_ATPase_C	PF00689	657 - 827	6.1e-25	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	159, 2102
AarI	CACCTGC	1 cut(s)	1159
Acc36I	ACCTGC	1 cut(s)	1159
AccBSI	CCGCTC	1 cut(s)	1975
AccI	GTMKAC	2 cut(s)	856, 1748
AccII	CGCG	1 cut(s)	210
AciI	CCGC	7 cut(s)	262, 547, 1441, 1535, 1786, 1949, 1973
AclWI	GGATC	7 cut(s)	11, 571, 647, 857, 1256, 1547, 1825
AcsI	RAATTY	5 cut(s)	86, 508, 557, 1091, 2276
AcuI	CTGAAG	3 cut(s)	209, 776, 1386
AfaI	GTAC	5 cut(s)	7, 626, 1303, 1572, 2144
AfiI	CCNNNNNNNGG	5 cut(s)	283, 913, 935, 1168, 2455
AflIII	ACRYGT	2 cut(s)	605, 1518
AhlI	ACTAGT	2 cut(s)	271, 2029
AjnI	CCWGG	2 cut(s)	391, 1294
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
AleI	CACNNNNGTG	2 cut(s)	144, 2222
Alw21I	GWGCWC	2 cut(s)	331, 1843
Alw26I	GTCTC	6 cut(s)	413, 686, 1248, 1403, 2116, 2202
Alw44I	GTGCAC	1 cut(s)	1839
AlwI	GGATC	7 cut(s)	11, 571, 647, 857, 1256, 1547, 1825
AlwNI	CAGNNNCTG	2 cut(s)	1909, 2140
Ama87I	CYCGRG	1 cut(s)	12
AoxI	GGCC	4 cut(s)	180, 389, 1445, 1467
ApaLI	GTGCAC	1 cut(s)	1839
ApeKI	GCWGC	7 cut(s)	305, 463, 737, 740, 1223, 1900, 1903
ApoI	RAATTY	5 cut(s)	86, 508, 557, 1091, 2276
Asp700I	GAANNNNTTC	3 cut(s)	1317, 1371, 1884
AspLEI	GCGC	2 cut(s)	210, 2061
AspS9I	GGNCC	4 cut(s)	389, 925, 2024, 2305
AsuHPI	GGTGA	7 cut(s)	407, 545, 661, 905, 929, 1280, 2011
AsuII	TTCGAA	2 cut(s)	1321, 2287
AvaI	CYCGRG	1 cut(s)	12
AvaII	GGWCC	3 cut(s)	925, 2024, 2305
BaeGI	GKGCMC	1 cut(s)	1843
BaeI	ACNNNNGTAYC	2 cut(s)	236, 269
BauI	CACGAG	1 cut(s)	1007
BbsI	GAAGAC	1 cut(s)	782
Bbv12I	GWGCWC	2 cut(s)	331, 1843
BbvI	GCAGC	7 cut(s)	317, 475, 727, 749, 1210, 1912, 1915
BccI	CCATC	9 cut(s)	521, 670, 702, 929, 1049, 1637, 1854, 2059, 2316
BceAI	ACGGC	1 cut(s)	1380
BciT130I	CCWGG	2 cut(s)	393, 1296
BclI	TGATCA	1 cut(s)	801
BcoDI	GTCTC	6 cut(s)	413, 686, 1248, 1403, 2116, 2202
BcuI	ACTAGT	2 cut(s)	271, 2029
BfaI	CTAG	6 cut(s)	93, 227, 272, 429, 1656, 2030
BfmI	CTRYAG	2 cut(s)	461, 1031
BfoI	RGCGCY	1 cut(s)	2062
BfuAI	ACCTGC	1 cut(s)	1159
BglII	AGATCT	1 cut(s)	95
BisI	GCNGC	8 cut(s)	306, 464, 738, 741, 1224, 1901, 1904, 1950
BlpI	GCTNAGC	1 cut(s)	2055
BlsI	GCNGC	8 cut(s)	307, 465, 739, 742, 1225, 1902, 1905, 1951
Bme1390I	CCNGG	2 cut(s)	393, 1296
Bme18I	GGWCC	3 cut(s)	925, 2024, 2305
BmeT110I	CYCGRG	1 cut(s)	12
BmgT120I	GGNCC	4 cut(s)	389, 925, 2024, 2305
BmiI	GGNNCC	1 cut(s)	927
BmrFI	CCNGG	2 cut(s)	393, 1296
BmrI	ACTGGG	1 cut(s)	1089
BmsI	GCATC	4 cut(s)	445, 815, 1471, 1642
BmuI	ACTGGG	1 cut(s)	1089
BpiI	GAAGAC	1 cut(s)	782
BpmI	CTGGAG	1 cut(s)	1008
Bpu10I	CCTNAGC	1 cut(s)	1112
Bpu1102I	GCTNAGC	1 cut(s)	2055
Bpu14I	TTCGAA	2 cut(s)	1321, 2287
BpuEI	CTTGAG	3 cut(s)	127, 765, 929
Bsa29I	ATCGAT	1 cut(s)	256
BsaBI	GATNNNNATC	1 cut(s)	806
BsaI	GGTCTC	1 cut(s)	2202
BsaJI	CCNNGG	4 cut(s)	949, 1464, 1742, 2086
Bsc4I	CCNNNNNNNGG	5 cut(s)	283, 913, 935, 1168, 2455
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	9 cut(s)	605, 866, 991, 1084, 1270, 1504, 1819, 2299, 2432
Bse3DI	GCAATG	2 cut(s)	175, 1483
Bse8I	GATNNNNATC	1 cut(s)	806
BseBI	CCWGG	2 cut(s)	393, 1296
BseCI	ATCGAT	1 cut(s)	256
BseDI	CCNNGG	4 cut(s)	949, 1464, 1742, 2086
BseGI	GGATG	2 cut(s)	713, 2308
BseJI	GATNNNNATC	1 cut(s)	806
BseLI	CCNNNNNNNGG	5 cut(s)	283, 913, 935, 1168, 2455
BseMI	GCAATG	2 cut(s)	175, 1483
BseMII	CTCAG	4 cut(s)	1126, 1414, 1880, 2046
BseNI	ACTGG	9 cut(s)	605, 866, 991, 1084, 1270, 1504, 1819, 2299, 2432
BseSI	GKGCMC	1 cut(s)	1843
BseXI	GCAGC	7 cut(s)	317, 475, 727, 749, 1210, 1912, 1915
BseYI	CCCAGC	1 cut(s)	703
BsgI	GTGCAG	1 cut(s)	2006
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	4 cut(s)	182, 391, 1447, 1469
BshVI	ATCGAT	1 cut(s)	256
BsiHKAI	GWGCWC	2 cut(s)	331, 1843
BsiHKCI	CYCGRG	1 cut(s)	12
BsiSI	CCGG	2 cut(s)	183, 2051
BslFI	GGGAC	3 cut(s)	47, 911, 1878
BslI	CCNNNNNNNGG	5 cut(s)	283, 913, 935, 1168, 2455
BsmAI	GTCTC	6 cut(s)	413, 686, 1248, 1403, 2116, 2202
BsmBI	CGTCTC	1 cut(s)	1403
BsmFI	GGGAC	3 cut(s)	47, 911, 1878
BsnI	GGCC	4 cut(s)	182, 391, 1447, 1469
Bso31I	GGTCTC	1 cut(s)	2202
BsoBI	CYCGRG	1 cut(s)	12
Bsp119I	TTCGAA	2 cut(s)	1321, 2287
Bsp1286I	GDGCHC	2 cut(s)	331, 1843
Bsp1720I	GCTNAGC	1 cut(s)	2055
Bsp19I	CCATGG	1 cut(s)	1464
BspACI	CCGC	7 cut(s)	262, 547, 1441, 1535, 1786, 1949, 1973
BspANI	GGCC	4 cut(s)	182, 391, 1447, 1469
BspCNI	CTCAG	4 cut(s)	1125, 1413, 1881, 2047
BspDI	ATCGAT	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	210
BspHI	TCATGA	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	927
BspMAI	CTGCAG	1 cut(s)	465
BspMI	ACCTGC	1 cut(s)	1159
BspPI	GGATC	7 cut(s)	11, 571, 647, 857, 1256, 1547, 1825
BspT104I	TTCGAA	2 cut(s)	1321, 2287
BspTNI	GGTCTC	1 cut(s)	2202
BsrBI	CCGCTC	1 cut(s)	1975
BsrDI	GCAATG	2 cut(s)	175, 1483
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	9 cut(s)	605, 866, 991, 1084, 1270, 1504, 1819, 2299, 2432
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	4 cut(s)	949, 1464, 1742, 2086
BssSI	CACGAG	1 cut(s)	1007
BssT1I	CCWWGG	1 cut(s)	1464
Bst2BI	CACGAG	1 cut(s)	1007
Bst2UI	CCWGG	2 cut(s)	393, 1296
Bst4CI	ACNGT	6 cut(s)	218, 763, 1035, 1746, 1810, 2127
Bst6I	CTCTTC	3 cut(s)	684, 915, 2114
BstAPI	GCANNNNNTGC	1 cut(s)	1783
BstBI	TTCGAA	2 cut(s)	1321, 2287
BstC8I	GCNNGC	4 cut(s)	303, 1449, 1561, 1779
BstDEI	CTNAG	4 cut(s)	1112, 1400, 1889, 2055
BstDSI	CCRYGG	3 cut(s)	949, 1464, 1742
BstF5I	GGATG	2 cut(s)	713, 2308
BstFNI	CGCG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	2062
BstHHI	GCGC	2 cut(s)	210, 2061
BstMAI	GTCTC	6 cut(s)	413, 686, 1248, 1403, 2116, 2202
BstMWI	GCNNNNNNNGC	7 cut(s)	75, 347, 709, 737, 1232, 1401, 1783
BstNI	CCWGG	2 cut(s)	393, 1296
BstNSI	RCATGY	1 cut(s)	609
BstSCI	CCNGG	2 cut(s)	391, 1294
BstSFI	CTRYAG	2 cut(s)	461, 1031
BstSLI	GKGCMC	1 cut(s)	1843
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	7 cut(s)	317, 475, 727, 749, 1210, 1912, 1915
BstV2I	GAAGAC	1 cut(s)	782
BstX2I	RGATCY	4 cut(s)	16, 95, 862, 1817
BstYI	RGATCY	4 cut(s)	16, 95, 862, 1817
Bsu15I	ATCGAT	1 cut(s)	256
BsuRI	GGCC	4 cut(s)	182, 391, 1447, 1469
BsuTUI	ATCGAT	1 cut(s)	256
BtgI	CCRYGG	3 cut(s)	949, 1464, 1742
BtsCI	GGATG	2 cut(s)	713, 2308
BtsI	GCAGTG	3 cut(s)	1066, 1781, 2480
BtsIMutI	CAGTG	6 cut(s)	598, 984, 1066, 1781, 1812, 2480
BveI	ACCTGC	1 cut(s)	1159
Cac8I	GCNNGC	4 cut(s)	303, 1449, 1561, 1779
CaiI	CAGNNNCTG	2 cut(s)	1909, 2140
CciI	TCATGA	1 cut(s)	22
CfoI	GCGC	2 cut(s)	210, 2061
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	4 cut(s)	389, 925, 2024, 2305
ClaI	ATCGAT	1 cut(s)	256
Csp6I	GTAC	5 cut(s)	6, 625, 1302, 1571, 2143
CspCI	CAANNNNNGTGG	2 cut(s)	2016, 2051
CviQI	GTAC	5 cut(s)	6, 625, 1302, 1571, 2143
DdeI	CTNAG	4 cut(s)	1112, 1400, 1889, 2055
DraI	TTTAAA	1 cut(s)	1179
Eam1104I	CTCTTC	3 cut(s)	684, 915, 2114
EarI	CTCTTC	3 cut(s)	684, 915, 2114
EciI	GGCGGA	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	1464
Eco31I	GGTCTC	1 cut(s)	2202
Eco47I	GGWCC	3 cut(s)	925, 2024, 2305
Eco57I	CTGAAG	3 cut(s)	209, 776, 1386
Eco88I	CYCGRG	1 cut(s)	12
EcoO109I	RGGNCCY	2 cut(s)	389, 925
EcoRII	CCWGG	2 cut(s)	391, 1294
EcoT14I	CCWWGG	1 cut(s)	1464
EcoT22I	ATGCAT	1 cut(s)	1878
ErhI	CCWWGG	1 cut(s)	1464
Esp3I	CGTCTC	1 cut(s)	1403
FalI	AAGNNNNNCTT	4 cut(s)	774, 806, 1559, 1591
FaqI	GGGAC	3 cut(s)	47, 911, 1878
FauI	CCCGC	1 cut(s)	1528
FauNDI	CATATG	1 cut(s)	798
FbaI	TGATCA	1 cut(s)	801
FblI	GTMKAC	2 cut(s)	856, 1748
Fnu4HI	GCNGC	8 cut(s)	306, 464, 738, 741, 1224, 1901, 1904, 1950
FokI	GGATG	2 cut(s)	720, 2295
Fsp4HI	GCNGC	8 cut(s)	306, 464, 738, 741, 1224, 1901, 1904, 1950
FspBI	CTAG	6 cut(s)	93, 227, 272, 429, 1656, 2030
GlaI	GCGC	2 cut(s)	209, 2060
GluI	GCNGC	8 cut(s)	306, 464, 738, 741, 1224, 1901, 1904, 1950
GsaI	CCCAGC	1 cut(s)	707
GsuI	CTGGAG	1 cut(s)	1008
HaeII	RGCGCY	1 cut(s)	2062
HaeIII	GGCC	4 cut(s)	182, 391, 1447, 1469
HapII	CCGG	2 cut(s)	183, 2051
HhaI	GCGC	2 cut(s)	210, 2061
Hin6I	GCGC	2 cut(s)	208, 2059
HinP1I	GCGC	2 cut(s)	208, 2059
HincII	GTYRAC	1 cut(s)	857
HindII	GTYRAC	1 cut(s)	857
HinfI	GANTC	9 cut(s)	73, 136, 258, 981, 1013, 1127, 1212, 2371, 2515
HpaII	CCGG	2 cut(s)	183, 2051
HphI	GGTGA	7 cut(s)	407, 545, 661, 905, 929, 1280, 2011
Hpy188III	TCNNGA	9 cut(s)	12, 14, 23, 93, 277, 978, 1007, 1289, 2494
Hpy99I	CGWCG	1 cut(s)	1692
HpyAV	CCTTC	8 cut(s)	184, 476, 832, 1101, 1204, 1414, 1667, 2395
HpyCH4III	ACNGT	6 cut(s)	218, 763, 1035, 1746, 1810, 2127
HpyCH4IV	ACGT	1 cut(s)	1518
HpyF10VI	GCNNNNNNNGC	7 cut(s)	75, 347, 709, 737, 1232, 1401, 1783
HpyF3I	CTNAG	4 cut(s)	1112, 1400, 1889, 2055
HpySE526I	ACGT	1 cut(s)	1518
HspAI	GCGC	2 cut(s)	208, 2059
Ksp22I	TGATCA	1 cut(s)	801
Lsp1109I	GCAGC	7 cut(s)	317, 475, 727, 749, 1210, 1912, 1915
LweI	GCATC	4 cut(s)	445, 815, 1471, 1642
MaeI	CTAG	6 cut(s)	93, 227, 272, 429, 1656, 2030
MaeII	ACGT	1 cut(s)	1518
MbiI	CCGCTC	1 cut(s)	1975
MfeI	CAATTG	3 cut(s)	408, 966, 1611
MflI	RGATCY	4 cut(s)	16, 95, 862, 1817
MhlI	GDGCHC	2 cut(s)	331, 1843
MlyI	GAGTC	3 cut(s)	82, 145, 990
MmeI	TCCRAC	2 cut(s)	31, 1711
Mph1103I	ATGCAT	1 cut(s)	1878
MroXI	GAANNNNTTC	3 cut(s)	1317, 1371, 1884
MseI	TTAA	4 cut(s)	944, 1178, 1566, 2524
MslI	CAYNNNNRTG	3 cut(s)	144, 1436, 2222
MspA1I	CMGCKG	2 cut(s)	740, 1451
MspI	CCGG	2 cut(s)	183, 2051
MspR9I	CCNGG	2 cut(s)	393, 1296
MunI	CAATTG	3 cut(s)	408, 966, 1611
MvaI	CCWGG	2 cut(s)	393, 1296
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	7 cut(s)	75, 347, 709, 737, 1232, 1401, 1783
NcoI	CCATGG	1 cut(s)	1464
NdeI	CATATG	1 cut(s)	798
NlaIV	GGNNCC	1 cut(s)	927
NmuCI	GTSAC	6 cut(s)	137, 757, 982, 1490, 1810, 1964
NsiI	ATGCAT	1 cut(s)	1878
NspI	RCATGY	1 cut(s)	609
NspV	TTCGAA	2 cut(s)	1321, 2287
OliI	CACNNNNGTG	2 cut(s)	144, 2222
PaeR7I	CTCGAG	1 cut(s)	12
PagI	TCATGA	1 cut(s)	22
PaqCI	CACCTGC	1 cut(s)	1159
PciI	ACATGT	1 cut(s)	605
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PdmI	GAANNNNTTC	3 cut(s)	1317, 1371, 1884
PfeI	GAWTC	6 cut(s)	258, 1013, 1127, 1212, 2371, 2515
PkrI	GCNGC	8 cut(s)	307, 465, 739, 742, 1225, 1902, 1905, 1951
PleI	GAGTC	3 cut(s)	81, 144, 989
PpsI	GAGTC	3 cut(s)	81, 144, 989
PpuMI	RGGWCCY	1 cut(s)	925
PscI	ACATGT	1 cut(s)	605
PsiI	TTATAA	2 cut(s)	159, 2102
Psp5II	RGGWCCY	1 cut(s)	925
Psp6I	CCWGG	2 cut(s)	391, 1294
PspFI	CCCAGC	1 cut(s)	703
PspGI	CCWGG	2 cut(s)	391, 1294
PspN4I	GGNNCC	1 cut(s)	927
PspPI	GGNCC	4 cut(s)	389, 925, 2024, 2305
PspPPI	RGGWCCY	1 cut(s)	925
PstI	CTGCAG	1 cut(s)	465
PstNI	CAGNNNCTG	2 cut(s)	1909, 2140
PsuI	RGATCY	4 cut(s)	16, 95, 862, 1817
PvuII	CAGCTG	2 cut(s)	740, 1451
RsaI	GTAC	5 cut(s)	7, 626, 1303, 1572, 2144
RsaNI	GTAC	5 cut(s)	6, 625, 1302, 1571, 2143
RseI	CAYNNNNRTG	3 cut(s)	144, 1436, 2222
SalI	GTCGAC	1 cut(s)	855
SaqAI	TTAA	4 cut(s)	944, 1178, 1566, 2524
SatI	GCNGC	8 cut(s)	306, 464, 738, 741, 1224, 1901, 1904, 1950
Sau96I	GGNCC	4 cut(s)	389, 925, 2024, 2305
SchI	GAGTC	3 cut(s)	82, 145, 990
ScrFI	CCNGG	2 cut(s)	393, 1296
SduI	GDGCHC	2 cut(s)	331, 1843
SfaNI	GCATC	4 cut(s)	445, 815, 1471, 1642
SfcI	CTRYAG	2 cut(s)	461, 1031
Sfr274I	CTCGAG	1 cut(s)	12
SfuI	TTCGAA	2 cut(s)	1321, 2287
SinI	GGWCC	3 cut(s)	925, 2024, 2305
SlaI	CTCGAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	3 cut(s)	144, 1436, 2222
SmlI	CTYRAG	4 cut(s)	12, 142, 780, 908
SmoI	CTYRAG	4 cut(s)	12, 142, 780, 908
SpeI	ACTAGT	2 cut(s)	271, 2029
SsiI	CCGC	7 cut(s)	262, 547, 1441, 1535, 1786, 1949, 1973
SspI	AATATT	1 cut(s)	1921
SspMI	CTAG	6 cut(s)	93, 227, 272, 429, 1656, 2030
StyD4I	CCNGG	2 cut(s)	391, 1294
StyI	CCWWGG	1 cut(s)	1464
TaaI	ACNGT	6 cut(s)	218, 763, 1035, 1746, 1810, 2127
TaiI	ACGT	1 cut(s)	1521
TaqI	TCGA	5 cut(s)	13, 256, 856, 1321, 2287
TaqII	GACCGA	1 cut(s)	2100
TatI	WGTACW	2 cut(s)	5, 1301
TauI	GCSGC	1 cut(s)	1952
TfiI	GAWTC	6 cut(s)	258, 1013, 1127, 1212, 2371, 2515
Tru1I	TTAA	4 cut(s)	944, 1178, 1566, 2524
Tru9I	TTAA	4 cut(s)	944, 1178, 1566, 2524
TscAI	CASTG	6 cut(s)	605, 991, 1066, 1788, 1819, 2487
TseFI	GTSAC	6 cut(s)	137, 757, 982, 1490, 1810, 1964
TseI	GCWGC	7 cut(s)	305, 463, 737, 740, 1223, 1900, 1903
Tsp45I	GTSAC	6 cut(s)	137, 757, 982, 1490, 1810, 1964
TspDTI	ATGAA	8 cut(s)	739, 1186, 1204, 1347, 1424, 1433, 1893, 2401
TspGWI	ACGGA	4 cut(s)	325, 938, 1154, 1162
TspRI	CASTG	6 cut(s)	605, 991, 1066, 1788, 1819, 2487
VneI	GTGCAC	1 cut(s)	1839
VpaK11BI	GGWCC	3 cut(s)	925, 2024, 2305
XapI	RAATTY	5 cut(s)	86, 508, 557, 1091, 2276
XbaI	TCTAGA	1 cut(s)	92
XceI	RCATGY	1 cut(s)	609
XhoI	CTCGAG	1 cut(s)	12
XmiI	GTMKAC	2 cut(s)	856, 1748
XmnI	GAANNNNTTC	3 cut(s)	1317, 1371, 1884
XspI	CTAG	6 cut(s)	93, 227, 272, 429, 1656, 2030
Zsp2I	ATGCAT	1 cut(s)	1878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.