Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

12207551 .. 12217079

Gene Structure 9529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG081500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAGCTCCCATGTAAACCACGGAAGGAAGGGGATGCAGGCACTCAATTTACTTCAACTTGGACGCCGATTGCTCGTCCGACAATATGGCCATCCATCGGGTCCTTCCTATTGATCACAGGAACGCGGCATGACGTAAACCCTACTACCGCCACGGCAAGTCTGGAGGGTCAGTTGCATTCATATCGGTGTTCCTTATCTGGAGAGAAGACTACAACACCAGCTCACAGAAGGATGAGTCACTCAAGAGGGTTGCCTTATAACACAAGCAATGATTTGGAGACCGGTCTGAAGGAGGTTCCTGTTGAGCGCATGAACCGTTGGGTGCAAGCGAAACTACTTCATAAAGCATTATATCGATTCCGCCACACACTAGTCCTGAAAAGGGCAGAAGAAAAGAAGCAGGCGGCACGGAAACTTAGAGCACATGCCCAAGCCCTACGAGCTGCGGCTATCTTCAAAGAAGTTGCAGATCAAGTGAAAGGGACCGGTGATTATTTTCCAATTGAACCAGATGAACTTGCTAGTTTGATGAGGAATAGTGATGTTGATGCTCTGCAGCAATATGGGGGGAAGGAAGGCTTGGCAGATTTACTGAAAACAGATTTAGACAAGGGCATTGATGGGGATGATTTGCTAAAGCGGAGAATTAAATTTGGATCAAACATACATCCTCCAAAAACAGCAACGAGCCACTGGACATGTCTTTGGGAAGCTCTGTACAATTTTACTCGGATCGTTTTGGTGATTGCTTTTATGGGTTCTGTTGTGATGGGTATTCTGGAAGAGACTAAAAAGCTGGGATGGCACGATGTGTTCAGCGTTGCTATTGCAGCTGCCATGTTCATTCTTATGACAGTCTTATCTGAGTATACTCAAGCTCGTCAGTTCCAGCATATGATTAGCAGGGAGGAAATCAGAAACATAAAATCGAAGGTAGTCAAGGTTCGTCCTTTAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

320

Amino Acids

36.05

Weight (kDa)

9.6

Isoelectric Point (pI)

30.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	189 - 251	5.5e-11	Cation transporter/ATPase, N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	261
AccI	GTMKAC	1 cut(s)	872
AccII	CGCG	1 cut(s)	127
AciI	CCGC	6 cut(s)	127, 150, 364, 407, 449, 643
AclWI	GGATC	2 cut(s)	667, 743
AcoI	YGGCCR	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	653
AcuI	CTGAAG	1 cut(s)	311
AcyI	GRCGYC	1 cut(s)	65
AdeI	CACNNNGTG	1 cut(s)	814
AfaI	GTAC	1 cut(s)	722
AfiI	CCNNNNNNNGG	2 cut(s)	98, 385
AflIII	ACRYGT	1 cut(s)	701
AgeI	ACCGGT	2 cut(s)	284, 488
AgsI	TTSAA	3 cut(s)	57, 460, 509
AhlI	ACTAGT	1 cut(s)	373
AjuI	GAANNNNNNNTTGG	2 cut(s)	566, 598
AluBI	AGCT	7 cut(s)	7, 224, 446, 716, 799, 836, 881
AluI	AGCT	7 cut(s)	7, 224, 446, 716, 799, 836, 881
Alw21I	GWGCWC	2 cut(s)	9, 427
Alw26I	GTCTC	2 cut(s)	275, 782
AlwI	GGATC	2 cut(s)	667, 743
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	4 cut(s)	446, 559, 833, 836
ApoI	RAATTY	1 cut(s)	653
AsiGI	ACCGGT	2 cut(s)	284, 488
AspLEI	GCGC	1 cut(s)	312
AspS9I	GGNCC	2 cut(s)	102, 486
AsuHPI	GGTGA	2 cut(s)	503, 757
AvaII	GGWCC	2 cut(s)	102, 486
BalI	TGGCCA	1 cut(s)	91
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	215
Bbv12I	GWGCWC	2 cut(s)	9, 427
BbvI	GCAGC	4 cut(s)	433, 571, 823, 845
BccI	CCATC	5 cut(s)	100, 104, 617, 766, 798
BceAI	ACGGC	1 cut(s)	171
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BclI	TGATCA	1 cut(s)	114
BcoDI	GTCTC	2 cut(s)	275, 782
BcuI	ACTAGT	1 cut(s)	373
BfaI	CTAG	2 cut(s)	374, 525
BfmI	CTRYAG	1 cut(s)	557
BisI	GCNGC	7 cut(s)	128, 408, 447, 450, 560, 834, 837
BlsI	GCNGC	7 cut(s)	129, 409, 448, 451, 561, 835, 838
Bme18I	GGWCC	2 cut(s)	102, 486
BmgT120I	GGNCC	2 cut(s)	102, 486
BmiI	GGNNCC	3 cut(s)	103, 300, 487
BmsI	GCATC	2 cut(s)	25, 541
BpiI	GAAGAC	1 cut(s)	215
BpmI	CTGGAG	2 cut(s)	185, 222
BpuEI	CTTGAG	2 cut(s)	229, 861
Bsa29I	ATCGAT	1 cut(s)	358
BsaHI	GRCGYC	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	20, 153
BsaWI	WCCGGW	2 cut(s)	284, 488
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 385
Bse118I	RCCGGY	2 cut(s)	284, 488
Bse1I	ACTGG	1 cut(s)	701
Bse3DI	GCAATG	1 cut(s)	277
BseCI	ATCGAT	1 cut(s)	358
BseDI	CCNNGG	2 cut(s)	20, 153
BseGI	GGATG	6 cut(s)	40, 92, 240, 634, 670, 809
BseLI	CCNNNNNNNGG	2 cut(s)	98, 385
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	858
BseNI	ACTGG	1 cut(s)	701
BseXI	GCAGC	4 cut(s)	433, 571, 823, 845
BseYI	CCCAGC	1 cut(s)	799
Bsh1236I	CGCG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	91
BshTI	ACCGGT	2 cut(s)	284, 488
BshVI	ATCGAT	1 cut(s)	358
BsiHKAI	GWGCWC	2 cut(s)	9, 427
BsiSI	CCGG	2 cut(s)	285, 489
BslFI	GGGAC	1 cut(s)	499
BslI	CCNNNNNNNGG	2 cut(s)	98, 385
BsmAI	GTCTC	2 cut(s)	275, 782
BsmFI	GGGAC	1 cut(s)	499
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	91
Bso31I	GGTCTC	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	9, 427
Bsp1407I	TGTACA	1 cut(s)	720
Bsp143I	GATC	4 cut(s)	114, 472, 659, 735
BspACI	CCGC	6 cut(s)	127, 150, 364, 407, 449, 643
BspANI	GGCC	1 cut(s)	91
BspCNI	CTCAG	1 cut(s)	859
BspDI	ATCGAT	1 cut(s)	358
BspFNI	CGCG	1 cut(s)	127
BspLI	GGNNCC	3 cut(s)	103, 300, 487
BspMAI	CTGCAG	1 cut(s)	561
BspPI	GGATC	2 cut(s)	667, 743
BspTNI	GGTCTC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	277
BsrFI	RCCGGY	2 cut(s)	284, 488
BsrGI	TGTACA	1 cut(s)	720
BsrI	ACTGG	1 cut(s)	701
BssAI	RCCGGY	2 cut(s)	284, 488
BssECI	CCNNGG	2 cut(s)	20, 153
BssMI	GATC	4 cut(s)	114, 472, 659, 735
BssNAI	GTATAC	1 cut(s)	873
BssNI	GRCGYC	1 cut(s)	65
Bst1107I	GTATAC	1 cut(s)	873
Bst4CI	ACNGT	2 cut(s)	320, 859
Bst6I	CTCTTC	1 cut(s)	780
BstACI	GRCGYC	1 cut(s)	65
BstAUI	TGTACA	1 cut(s)	720
BstC8I	GCNNGC	3 cut(s)	40, 330, 405
BstDEI	CTNAG	2 cut(s)	419, 867
BstDSI	CCRYGG	2 cut(s)	20, 153
BstF5I	GGATG	6 cut(s)	40, 92, 240, 634, 670, 809
BstFNI	CGCG	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	4 cut(s)	117, 475, 662, 738
BstMAI	GTCTC	2 cut(s)	275, 782
BstMBI	GATC	4 cut(s)	114, 472, 659, 735
BstMWI	GCNNNNNNNGC	3 cut(s)	443, 805, 833
BstNSI	RCATGY	2 cut(s)	431, 705
BstSFI	CTRYAG	1 cut(s)	557
BstUI	CGCG	1 cut(s)	127
BstV1I	GCAGC	4 cut(s)	433, 571, 823, 845
BstV2I	GAAGAC	1 cut(s)	215
BstZ17I	GTATAC	1 cut(s)	873
Bsu15I	ATCGAT	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	91
BsuTUI	ATCGAT	1 cut(s)	358
BtgI	CCRYGG	2 cut(s)	20, 153
BtsCI	GGATG	6 cut(s)	40, 92, 240, 634, 670, 809
BtsIMutI	CAGTG	1 cut(s)	694
Cac8I	GCNNGC	3 cut(s)	40, 330, 405
CfoI	GCGC	1 cut(s)	312
Cfr10I	RCCGGY	2 cut(s)	284, 488
Cfr13I	GGNCC	2 cut(s)	102, 486
ClaI	ATCGAT	1 cut(s)	358
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	721
CspAI	ACCGGT	2 cut(s)	284, 488
CviAII	CATG	6 cut(s)	12, 131, 313, 428, 702, 841
CviQI	GTAC	1 cut(s)	721
DdeI	CTNAG	2 cut(s)	419, 867
DpnI	GATC	4 cut(s)	116, 474, 661, 737
DpnII	GATC	4 cut(s)	114, 472, 659, 735
DraIII	CACNNNGTG	1 cut(s)	814
EaeI	YGGCCR	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	780
EarI	CTCTTC	1 cut(s)	780
EciI	GGCGGA	1 cut(s)	353
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	275
Eco47I	GGWCC	2 cut(s)	102, 486
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	6 cut(s)	15, 134, 316, 431, 705, 844
FalI	AAGNNNNNCTT	2 cut(s)	566, 598
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	6 cut(s)	11, 130, 312, 427, 701, 840
FauNDI	CATATG	1 cut(s)	897
FbaI	TGATCA	1 cut(s)	114
FblI	GTMKAC	1 cut(s)	872
Fnu4HI	GCNGC	7 cut(s)	128, 408, 447, 450, 560, 834, 837
FokI	GGATG	6 cut(s)	47, 79, 247, 641, 657, 816
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	7 cut(s)	128, 408, 447, 450, 560, 834, 837
FspBI	CTAG	2 cut(s)	374, 525
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	7 cut(s)	128, 408, 447, 450, 560, 834, 837
GsaI	CCCAGC	1 cut(s)	803
GsuI	CTGGAG	2 cut(s)	185, 222
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	2 cut(s)	285, 489
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	1 cut(s)	312
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	6 cut(s)	15, 134, 316, 431, 705, 844
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HinfI	GANTC	2 cut(s)	238, 360
HpaII	CCGG	2 cut(s)	285, 489
HphI	GGTGA	2 cut(s)	503, 757
Hpy166II	GTNNAC	3 cut(s)	17, 139, 873
Hpy188I	TCNGA	5 cut(s)	81, 291, 735, 868, 920
Hpy188III	TCNNGA	5 cut(s)	164, 201, 246, 379, 782
Hpy8I	GTNNAC	3 cut(s)	17, 139, 873
HpyAV	CCTTC	8 cut(s)	19, 23, 115, 225, 286, 568, 572, 928
HpyCH4III	ACNGT	2 cut(s)	320, 859
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	6 cut(s)	38, 178, 328, 470, 559, 833
HpyF10VI	GCNNNNNNNGC	3 cut(s)	443, 805, 833
HpyF3I	CTNAG	2 cut(s)	419, 867
HpySE526I	ACGT	1 cut(s)	135
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	6 cut(s)	15, 134, 316, 431, 705, 844
HspAI	GCGC	1 cut(s)	310
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	4 cut(s)	114, 472, 659, 735
LmnI	GCTCC	2 cut(s)	4, 12
Lsp1109I	GCAGC	4 cut(s)	433, 571, 823, 845
LweI	GCATC	2 cut(s)	25, 541
MaeI	CTAG	2 cut(s)	374, 525
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	4 cut(s)	116, 474, 661, 737
MboI	GATC	4 cut(s)	114, 472, 659, 735
MboII	GAAGA	4 cut(s)	220, 404, 448, 797
MfeI	CAATTG	1 cut(s)	504
MhlI	GDGCHC	2 cut(s)	9, 427
MlsI	TGGCCA	1 cut(s)	91
MluCI	AATT	5 cut(s)	47, 504, 648, 653, 724
MluNI	TGGCCA	1 cut(s)	91
MlyI	GAGTC	1 cut(s)	247
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	6 cut(s)	160, 242, 289, 528, 684, 904
Mox20I	TGGCCA	1 cut(s)	91
MscI	TGGCCA	1 cut(s)	91
MseI	TTAA	2 cut(s)	651, 961
MslI	CAYNNNNRTG	2 cut(s)	187, 851
Msp20I	TGGCCA	1 cut(s)	91
MspA1I	CMGCKG	1 cut(s)	836
MspI	CCGG	2 cut(s)	285, 489
MunI	CAATTG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	178
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	3 cut(s)	443, 805, 833
NdeI	CATATG	1 cut(s)	897
NdeII	GATC	4 cut(s)	114, 472, 659, 735
NlaIII	CATG	6 cut(s)	15, 134, 316, 431, 705, 844
NlaIV	GGNNCC	3 cut(s)	103, 300, 487
NmuCI	GTSAC	1 cut(s)	239
NspI	RCATGY	2 cut(s)	431, 705
PciI	ACATGT	1 cut(s)	701
PctI	GAATGC	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	360
PinAI	ACCGGT	2 cut(s)	284, 488
PkrI	GCNGC	7 cut(s)	129, 409, 448, 451, 561, 835, 838
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
PpuMI	RGGWCCY	1 cut(s)	102
PscI	ACATGT	1 cut(s)	701
PsiI	TTATAA	1 cut(s)	261
Psp124BI	GAGCTC	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	102
PspFI	CCCAGC	1 cut(s)	799
PspN4I	GGNNCC	3 cut(s)	103, 300, 487
PspPI	GGNCC	2 cut(s)	102, 486
PspPPI	RGGWCCY	1 cut(s)	102
PsrI	GAACNNNNNNTAC	2 cut(s)	930, 962
PstI	CTGCAG	1 cut(s)	561
PvuII	CAGCTG	1 cut(s)	836
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
RseI	CAYNNNNRTG	2 cut(s)	187, 851
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	651, 961
SatI	GCNGC	7 cut(s)	128, 408, 447, 450, 560, 834, 837
Sau3AI	GATC	4 cut(s)	114, 472, 659, 735
Sau96I	GGNCC	2 cut(s)	102, 486
SchI	GAGTC	1 cut(s)	247
SduI	GDGCHC	2 cut(s)	9, 427
SfaNI	GCATC	2 cut(s)	25, 541
SfcI	CTRYAG	1 cut(s)	557
SinI	GGWCC	2 cut(s)	102, 486
SmiMI	CAYNNNNRTG	2 cut(s)	187, 851
SmlI	CTYRAG	2 cut(s)	244, 876
SmoI	CTYRAG	2 cut(s)	244, 876
SpeI	ACTAGT	1 cut(s)	373
Sse9I	AATT	5 cut(s)	47, 504, 648, 653, 724
SsiI	CCGC	6 cut(s)	127, 150, 364, 407, 449, 643
SspMI	CTAG	2 cut(s)	374, 525
SstI	GAGCTC	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	320, 859
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	2 cut(s)	358, 932
TasI	AATT	5 cut(s)	47, 504, 648, 653, 724
TatI	WGTACW	1 cut(s)	720
TauI	GCSGC	3 cut(s)	130, 410, 452
TfiI	GAWTC	1 cut(s)	360
Tru1I	TTAA	2 cut(s)	651, 961
Tru9I	TTAA	2 cut(s)	651, 961
TscAI	CASTG	1 cut(s)	701
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	4 cut(s)	446, 559, 833, 836
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	5 cut(s)	171, 329, 332, 531, 835
TspGWI	ACGGA	2 cut(s)	37, 427
TspRI	CASTG	1 cut(s)	701
VpaK11BI	GGWCC	2 cut(s)	102, 486
XapI	RAATTY	1 cut(s)	653
XceI	RCATGY	2 cut(s)	431, 705
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	872
XspI	CTAG	2 cut(s)	374, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.