Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

15788012 .. 15817681

Gene Structure 29670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G007440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2940 bp

ATGTCGAACCTGAAATGGAAAGCATCGATTCTGGGGTCCACACCAGATTCAACTGAAGCGATCATAATGAAATGGATCCAAGAGGTTCAAGAGCCGAAAGAGCTCTCAAAGAACATTGTTGGTACCTTTTACCTTGAGATGTACAGAAGTTGTGCTCGATTTAGGGATTGGGGTTTCCAACTTTTGAATGCTGAGACATTCGAGACAGTAGCGGGAAGTGACAGTTATCTGGCACTTTTCTTGCAATCTGTTGGAAAGATCGTCCCTCGCATTGACAAATTTTTCAGATCTTCCCACGCTTCACAGTTCACACAAAGAAGCTACTCGCTTCCGTTTGGTCTCCGTCGCACCGGAATTGACTGGTCTCTTCTCCGGCGTCTCTTCAACAGTTGGCAGATTGCACCGTTACTACGATCCGGTGGAGGAAAAGACAAAATCAAGAATATGATGGAGGAAAAGACAACGGTCAAGTTGATATTACGGACTGCAACACCAGCTCACAGAAGGATGAGTCACTCAAGTAATGATTTGGAGACCGGTCTGATGGCCCCTGTTGAGCGCGTGATGAACCGTTGGGGGCAAGTGAAACGATATCTGAAACATCGATTCCGTCACACACTAGTCCTGAAAAGGGCAGAAGAAAAGAAGCAGACAGCACGGAAACAACTTATTAGAGCACACATCCAAGCCCTACGAGCTGCGGCTTTCTTCAAACAATTTGCCTATCAAGGGCCTGGTGATGATTTTCCAATTGAACCAGAGACACTTGCTAGTATGACGAGGGATAGTAATGTTGATGCTCTGCGGCGATATGGGGGGAAAGAAGGCTTGGCAAAATCACTGAAAACAAATTTAGTCAAGGGAATTGATGGGGGTGATTTACAAAAGCGGAGAGATAAATTTGGATCAAACAAAAATCCTCCAAAAACAGCAACGAGCCACTGGATATGTCTTTGGAAAGCTCTGTACGATTTCACTCGGATCGTTCTGGTGAATGCTTTTGTGGGTTCTGTTGTGATGGGTATTATGGAAGAGACTAAAAAGGTGGGATGGCACGATGTATTCAGCGTTGCTATTGCAGCTGCCATGTTCATTTTTACCACAGTCTTATCTAACTATACTCAAGCTCGTCTTCAGAATAAGATAATGAGATGCAGAGAATTGAAGGTTATTAGAGCTGATCAACAAGTTCCGGTTTCTATTTGTGAGATTGTTGTTGGTGATGTTATACCCCTTGAGTCTGGTGATGAGGTCCCTGCTGATGGCATTTTAATCCGTGGTTTCTCATCACTTGCAATTAATAAGTCCAGAATCACTGGAGAGAGCATGACTTTTGACGAGGATTCAAGGAAACCATTTCTACAGTCTGGCTGGAAAGTAACACAGGGCAGTGCTACTATGCTGGTAACTGGGGTAGGGAAATTTACTGAATTGGGAAGGCTCAGGGCTAGTGCCTATTCAAAAGACACGGAGAAACGGAAGAATAAAACCCACTTGCAGGTGCTTTTAAAGAAGGTTGCTACCTTCATGGGTGCTGTCGGATTCATGGTTGCTGCCATTGTTGCATATGTTGTTTGGATCAGAGGCTACTTTACTGGTGATAGTTCAAATGGAAGTACACTTGAAGAAGTCATTCGAATTAGTATTATTGCAGTCACCATTTTTGTCGTTTCATTACCTGAAGTGCTTCCTTTAGCTTTCAACATAAGCCGTCTCAGCTCAATGAAAAAGATGAAGGCAGACAACATGTTGGTGCGGAGGCCAGCTGTATGTGAAACCATGGCCTTATGCACTGATGTAGTCTGTGACATGACTGGAATTACTTTGGACAACGTGGATGATGTTCAAGCGGGGATCAAGGAAATAAAAAGAACTGGCATTAAGGTACGCCTTGTTACGCATGACGATCTTCAAACTGCAAAAGCAATTGCTATGAAATGTGGCATACTTGCTTCTGATGGGTCAGATGCTAGTGAGGTAATTTTTGAAGGAGAAGCGTTCCGACAACTTTCTGATAGTCAGAGAGAAGATTTAGCAGAGAAGATTTTGGTAATGCGACTGTCTACCCCCGATGACAAACTTTTGCTTGTGCAAGCACTGCGGAAAAGAGAAAAGGTTGTTGCTATCACTGGATCTGTCATTAGTGATGCCAGTGCACTACAAGAGGCCGACATTGGTCTTGCTATGGGTGAACAAGCGACTGAAGTTGTTAAAGAGAGTTCAGATATCGTAATCTTGGATCGCAATCTCGCTACTGTAGCCAAGGGTTTCAAATGGGGACGATCTAAGCATAAAAACGTTCTGACAGTTATGCAACAGCAACTTACAGTGAATATTGTAGCAGTAACTTTAAACTGCTTCGGGGCAGTTTACTGTGGTTACATTCTGCTCAATCCTGTGCAGTTTGTGTGGGTGATTGTTATCATATTTTTTCTTGGACCACTAATATTGGCAACTGAATATCCAGCTGAACGCCTGATGGACGAACCCCCTATTGACAGAGGACAACCTCTTATAAAATATATTCGGTGGACGAGACTGTTGATACAGGTTCTGTTCCAAATTATTGCCCTGCTTGTCATCAATTTTCAAGTAGGGAGTTTACTGAAAAATTATACCGAAGACCACGCCACCAAAGTGAAAAATACAATGATATTCAACACATTTGTTATATGTCAGATTTCCATCGAATTCGGAGTTCGAAAGACTGGTATACTGGACCATCCTTTGAAATGGATTACTGCCAACTCCGTGTTTCTGGGAATAGTGGGAATAATTCTTGTGATTCAGTTTATCATCATTGAGTTTCTTGGGAAGGCGTTTTTCGTAGTCAGGCTTGACAGGAAAGAGTGGGAGTTTTCCCTCACTCTTGGAATTGTCGAGTTGTTTTTTGCACTGCTTCTATTCGTAAAGCACTTGACACAAAGGAATCATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

979

Amino Acids

110.05

Weight (kDa)

9.55

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	272 - 333	2.5e-10	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	387 - 482	1.8e-16	P-type ATPase actuator domain
Cation_ATPase_C	PF00689	796 - 965	3.5e-21	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2516
AarI	CACCTGC	1 cut(s)	1489
Acc36I	ACCTGC	1 cut(s)	1489
Acc65I	GGTACC	1 cut(s)	122
AccB1I	GGYRCC	1 cut(s)	122
AccI	GTMKAC	2 cut(s)	2063, 2713
AccII	CGCG	1 cut(s)	561
AciI	CCGC	7 cut(s)	212, 701, 805, 889, 1756, 1850, 2101
AclI	AACGTT	1 cut(s)	2298
AclWI	GGATC	9 cut(s)	70, 83, 408, 913, 989, 1586, 1862, 2140, 2247
AcsI	RAATTY	5 cut(s)	278, 850, 899, 1421, 2690
AcuI	CTGAAG	4 cut(s)	75, 1118, 1701, 2223
AcyI	GRCGYC	1 cut(s)	376
AfaI	GTAC	5 cut(s)	124, 143, 968, 1618, 1887
AfiI	CCNNNNNNNGG	4 cut(s)	631, 729, 1262, 1498
AflIII	ACRYGT	1 cut(s)	1746
AgeI	ACCGGT	1 cut(s)	536
AhlI	ACTAGT	1 cut(s)	619
AjnI	CCWGG	1 cut(s)	733
AjuI	GAANNNNNNNTTGG	2 cut(s)	812, 844
AleI	CACNNNNGTG	1 cut(s)	2636
Alw21I	GWGCWC	4 cut(s)	105, 157, 679, 2158
Alw44I	GTGCAC	1 cut(s)	2154
AlwI	GGATC	9 cut(s)	70, 83, 408, 913, 989, 1586, 1862, 2140, 2247
AlwNI	CAGNNNCTG	1 cut(s)	2554
AoxI	GGCC	5 cut(s)	546, 731, 1760, 1782, 2166
ApaLI	GTGCAC	1 cut(s)	2154
ApeKI	GCWGC	4 cut(s)	698, 1079, 1082, 1553
ApoI	RAATTY	5 cut(s)	278, 850, 899, 1421, 2690
AseI	ATTAAT	1 cut(s)	1299
AsiGI	ACCGGT	1 cut(s)	536
Asp700I	GAANNNNTTC	2 cut(s)	1632, 1686
Asp718I	GGTACC	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	561
AspS9I	GGNCC	6 cut(s)	36, 547, 731, 1252, 2438, 2719
AsuHPI	GGTGA	9 cut(s)	749, 887, 1003, 1232, 1256, 1610, 1648, 2201, 2425
AsuII	TTCGAA	2 cut(s)	1636, 2701
AvaII	GGWCC	4 cut(s)	36, 1252, 2438, 2719
BaeGI	GKGCMC	1 cut(s)	2158
BamHI	GGATCC	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	2 cut(s)	1124, 2628
Bbv12I	GWGCWC	4 cut(s)	105, 157, 679, 2158
BbvI	GCAGC	4 cut(s)	685, 1069, 1091, 1540
BceAI	ACGGC	1 cut(s)	1695
BciT130I	CCWGG	1 cut(s)	735
BclI	TGATCA	1 cut(s)	1180
BcuI	ACTAGT	1 cut(s)	619
BfaI	CTAG	4 cut(s)	620, 771, 1449, 1971
BfmI	CTRYAG	2 cut(s)	1361, 2256
BfuAI	ACCTGC	1 cut(s)	1489
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	6 cut(s)	699, 702, 806, 1080, 1083, 1554
BlsI	GCNGC	6 cut(s)	700, 703, 807, 1081, 1084, 1555
Bme1390I	CCNGG	1 cut(s)	735
Bme18I	GGWCC	4 cut(s)	36, 1252, 2438, 2719
BmgT120I	GGNCC	6 cut(s)	36, 547, 731, 1252, 2438, 2719
BmiI	GGNNCC	5 cut(s)	37, 77, 124, 549, 1254
BmrFI	CCNGG	1 cut(s)	735
BmrI	ACTGGG	1 cut(s)	1419
BmsI	GCATC	5 cut(s)	32, 787, 1142, 1957, 2137
BmuI	ACTGGG	1 cut(s)	1419
BoxI	GACNNNNGTC	2 cut(s)	464, 2175
BpiI	GAAGAC	2 cut(s)	1124, 2628
BpmI	CTGGAG	1 cut(s)	1338
Bpu10I	CCTNAGC	1 cut(s)	1442
Bpu14I	TTCGAA	2 cut(s)	1636, 2701
BpuEI	CTTGAG	4 cut(s)	155, 502, 1107, 1256
Bsa29I	ATCGAT	2 cut(s)	26, 604
BsaBI	GATNNNNATC	3 cut(s)	2244, 2420, 2684
BsaHI	GRCGYC	1 cut(s)	376
BsaI	GGTCTC	3 cut(s)	344, 369, 527
BsaJI	CCNNGG	3 cut(s)	1276, 1779, 2262
BsaWI	WCCGGW	4 cut(s)	350, 416, 536, 1192
Bsc4I	CCNNNNNNNGG	4 cut(s)	631, 729, 1262, 1498
Bse118I	RCCGGY	1 cut(s)	536
Bse8I	GATNNNNATC	3 cut(s)	2244, 2420, 2684
BseBI	CCWGG	1 cut(s)	735
BseCI	ATCGAT	2 cut(s)	26, 604
BseDI	CCNNGG	3 cut(s)	1276, 1779, 2262
BseGI	GGATG	5 cut(s)	513, 681, 1055, 1843, 2722
BseJI	GATNNNNATC	3 cut(s)	2244, 2420, 2684
BseLI	CCNNNNNNNGG	4 cut(s)	631, 729, 1262, 1498
BseMII	CTCAG	3 cut(s)	183, 1456, 1729
BseSI	GKGCMC	1 cut(s)	2158
BseXI	GCAGC	4 cut(s)	685, 1069, 1091, 1540
BsgI	GTGCAG	1 cut(s)	2420
Bsh1236I	CGCG	1 cut(s)	561
BshFI	GGCC	5 cut(s)	548, 733, 1762, 1784, 2168
BshNI	GGYRCC	1 cut(s)	122
BshTI	ACCGGT	1 cut(s)	536
BshVI	ATCGAT	2 cut(s)	26, 604
BsiHKAI	GWGCWC	4 cut(s)	105, 157, 679, 2158
BsiSI	CCGG	5 cut(s)	351, 373, 417, 537, 1193
BslFI	GGGAC	3 cut(s)	248, 1238, 2292
BslI	CCNNNNNNNGG	4 cut(s)	631, 729, 1262, 1498
BsmBI	CGTCTC	2 cut(s)	383, 1718
BsmFI	GGGAC	3 cut(s)	248, 1238, 2292
BsmI	GAATGC	2 cut(s)	193, 1000
BsnI	GGCC	5 cut(s)	548, 733, 1762, 1784, 2168
Bso31I	GGTCTC	3 cut(s)	344, 369, 527
Bsp119I	TTCGAA	2 cut(s)	1636, 2701
Bsp1286I	GDGCHC	4 cut(s)	105, 157, 679, 2158
Bsp1407I	TGTACA	1 cut(s)	141
Bsp19I	CCATGG	1 cut(s)	1779
BspACI	CCGC	7 cut(s)	212, 701, 805, 889, 1756, 1850, 2101
BspANI	GGCC	5 cut(s)	548, 733, 1762, 1784, 2168
BspCNI	CTCAG	3 cut(s)	184, 1455, 1728
BspDI	ATCGAT	2 cut(s)	26, 604
BspFNI	CGCG	1 cut(s)	561
BspLI	GGNNCC	5 cut(s)	37, 77, 124, 549, 1254
BspMI	ACCTGC	1 cut(s)	1489
BspPI	GGATC	9 cut(s)	70, 83, 408, 913, 989, 1586, 1862, 2140, 2247
BspT104I	TTCGAA	2 cut(s)	1636, 2701
BspT107I	GGYRCC	1 cut(s)	122
BspTNI	GGTCTC	3 cut(s)	344, 369, 527
BsrFI	RCCGGY	1 cut(s)	536
BsrGI	TGTACA	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	536
BssECI	CCNNGG	3 cut(s)	1276, 1779, 2262
BssNAI	GTATAC	1 cut(s)	2714
BssNI	GRCGYC	1 cut(s)	376
BssT1I	CCWWGG	2 cut(s)	1779, 2262
Bst1107I	GTATAC	1 cut(s)	2714
Bst2UI	CCWGG	1 cut(s)	735
Bst6I	CTCTTC	3 cut(s)	372, 386, 1026
BstACI	GRCGYC	1 cut(s)	376
BstAPI	GCANNNNNTGC	1 cut(s)	2098
BstAUI	TGTACA	1 cut(s)	141
BstBI	TTCGAA	2 cut(s)	1636, 2701
BstC8I	GCNNGC	2 cut(s)	1764, 2094
BstDEI	CTNAG	4 cut(s)	192, 1442, 1715, 2286
BstDSI	CCRYGG	2 cut(s)	1276, 1779
BstF5I	GGATG	5 cut(s)	513, 681, 1055, 1843, 2722
BstFNI	CGCG	1 cut(s)	561
BstHHI	GCGC	1 cut(s)	561
BstMWI	GCNNNNNNNGC	8 cut(s)	100, 494, 695, 1079, 1562, 1716, 2098, 2258
BstNI	CCWGG	1 cut(s)	735
BstNSI	RCATGY	1 cut(s)	1750
BstPAI	GACNNNNGTC	2 cut(s)	464, 2175
BstSCI	CCNGG	1 cut(s)	733
BstSFI	CTRYAG	2 cut(s)	1361, 2256
BstSLI	GKGCMC	1 cut(s)	2158
BstUI	CGCG	1 cut(s)	561
BstV1I	GCAGC	4 cut(s)	685, 1069, 1091, 1540
BstV2I	GAAGAC	2 cut(s)	1124, 2628
BstX2I	RGATCY	3 cut(s)	75, 287, 2132
BstYI	RGATCY	3 cut(s)	75, 287, 2132
BstZ17I	GTATAC	1 cut(s)	2714
Bsu15I	ATCGAT	2 cut(s)	26, 604
BsuRI	GGCC	5 cut(s)	548, 733, 1762, 1784, 2168
BsuTUI	ATCGAT	2 cut(s)	26, 604
BtgI	CCRYGG	2 cut(s)	1276, 1779
BtsCI	GGATG	5 cut(s)	513, 681, 1055, 1843, 2722
BtsI	GCAGTG	3 cut(s)	1396, 2096, 2894
BveI	ACCTGC	1 cut(s)	1489
Cac8I	GCNNGC	2 cut(s)	1764, 2094
CaiI	CAGNNNCTG	1 cut(s)	2554
CfoI	GCGC	1 cut(s)	561
Cfr10I	RCCGGY	1 cut(s)	536
Cfr13I	GGNCC	6 cut(s)	36, 547, 731, 1252, 2438, 2719
ClaI	ATCGAT	2 cut(s)	26, 604
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	5 cut(s)	123, 142, 967, 1617, 1886
CspAI	ACCGGT	1 cut(s)	536
CspCI	CAANNNNNGTGG	2 cut(s)	2430, 2465
CviAII	CATG	8 cut(s)	1087, 1327, 1528, 1546, 1747, 1780, 1810, 1901
CviQI	GTAC	5 cut(s)	123, 142, 967, 1617, 1886
DdeI	CTNAG	4 cut(s)	192, 1442, 1715, 2286
DraI	TTTAAA	2 cut(s)	1509, 2352
Eam1104I	CTCTTC	3 cut(s)	372, 386, 1026
EarI	CTCTTC	3 cut(s)	372, 386, 1026
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	1779, 2262
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	3 cut(s)	344, 369, 527
Eco32I	GATATC	2 cut(s)	593, 2227
Eco47I	GGWCC	4 cut(s)	36, 1252, 2438, 2719
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	4 cut(s)	75, 1118, 1701, 2223
EcoICRI	GAGCTC	1 cut(s)	103
EcoO109I	RGGNCCY	2 cut(s)	731, 1252
EcoRI	GAATTC	1 cut(s)	2690
EcoRII	CCWGG	1 cut(s)	733
EcoRV	GATATC	2 cut(s)	593, 2227
EcoT14I	CCWWGG	2 cut(s)	1779, 2262
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	2 cut(s)	1779, 2262
Esp3I	CGTCTC	2 cut(s)	383, 1718
FaeI	CATG	8 cut(s)	1090, 1330, 1531, 1549, 1750, 1783, 1813, 1904
FalI	AAGNNNNNCTT	2 cut(s)	1116, 1148
FaqI	GGGAC	3 cut(s)	248, 1238, 2292
FatI	CATG	8 cut(s)	1086, 1326, 1527, 1545, 1746, 1779, 1809, 1900
FauI	CCCGC	2 cut(s)	205, 1843
FauNDI	CATATG	1 cut(s)	1567
FbaI	TGATCA	1 cut(s)	1180
FblI	GTMKAC	2 cut(s)	2063, 2713
Fnu4HI	GCNGC	6 cut(s)	699, 702, 806, 1080, 1083, 1554
FokI	GGATG	5 cut(s)	520, 668, 1062, 1850, 2709
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	6 cut(s)	699, 702, 806, 1080, 1083, 1554
FspBI	CTAG	4 cut(s)	620, 771, 1449, 1971
GlaI	GCGC	1 cut(s)	560
GluI	GCNGC	6 cut(s)	699, 702, 806, 1080, 1083, 1554
GsuI	CTGGAG	1 cut(s)	1338
HaeIII	GGCC	5 cut(s)	548, 733, 1762, 1784, 2168
HapII	CCGG	5 cut(s)	351, 373, 417, 537, 1193
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	1 cut(s)	561
Hin1I	GRCGYC	1 cut(s)	376
Hin1II	CATG	8 cut(s)	1090, 1330, 1531, 1549, 1750, 1783, 1813, 1904
Hin6I	GCGC	1 cut(s)	559
HinP1I	GCGC	1 cut(s)	559
HpaII	CCGG	5 cut(s)	351, 373, 417, 537, 1193
HphI	GGTGA	9 cut(s)	749, 887, 1003, 1232, 1256, 1610, 1648, 2201, 2425
Hpy188III	TCNNGA	5 cut(s)	89, 202, 439, 625, 1308
Hpy99I	CGWCG	1 cut(s)	348
HpyAV	CCTTC	9 cut(s)	498, 818, 1159, 1431, 1507, 1534, 1729, 1982, 2809
HpyCH4IV	ACGT	2 cut(s)	1833, 2298
HpyF10VI	GCNNNNNNNGC	8 cut(s)	100, 494, 695, 1079, 1562, 1716, 2098, 2258
HpyF3I	CTNAG	4 cut(s)	192, 1442, 1715, 2286
HpySE526I	ACGT	2 cut(s)	1833, 2298
Hsp92I	GRCGYC	1 cut(s)	376
Hsp92II	CATG	8 cut(s)	1090, 1330, 1531, 1549, 1750, 1783, 1813, 1904
HspAI	GCGC	1 cut(s)	559
KpnI	GGTACC	1 cut(s)	126
Ksp22I	TGATCA	1 cut(s)	1180
Lsp1109I	GCAGC	4 cut(s)	685, 1069, 1091, 1540
LweI	GCATC	5 cut(s)	32, 787, 1142, 1957, 2137
MaeI	CTAG	4 cut(s)	620, 771, 1449, 1971
MaeII	ACGT	2 cut(s)	1833, 2298
MfeI	CAATTG	2 cut(s)	750, 1926
MflI	RGATCY	3 cut(s)	75, 287, 2132
MhlI	GDGCHC	4 cut(s)	105, 157, 679, 2158
MlyI	GAGTC	2 cut(s)	520, 1247
MmeI	TCCRAC	4 cut(s)	202, 232, 1519, 2026
MroXI	GAANNNNTTC	2 cut(s)	1632, 1686
MseI	TTAA	7 cut(s)	1271, 1299, 1508, 1881, 2211, 2351, 2938
MslI	CAYNNNNRTG	2 cut(s)	1751, 2636
MspA1I	CMGCKG	3 cut(s)	1082, 1766, 2468
MspI	CCGG	5 cut(s)	351, 373, 417, 537, 1193
MspR9I	CCNGG	1 cut(s)	735
MunI	CAATTG	2 cut(s)	750, 1926
Mva1269I	GAATGC	2 cut(s)	193, 1000
MvaI	CCWGG	1 cut(s)	735
MvnI	CGCG	1 cut(s)	561
MwoI	GCNNNNNNNGC	8 cut(s)	100, 494, 695, 1079, 1562, 1716, 2098, 2258
NcoI	CCATGG	1 cut(s)	1779
NdeI	CATATG	1 cut(s)	1567
NlaIII	CATG	8 cut(s)	1090, 1330, 1531, 1549, 1750, 1783, 1813, 1904
NlaIV	GGNNCC	5 cut(s)	37, 77, 124, 549, 1254
NmuCI	GTSAC	5 cut(s)	218, 512, 611, 1654, 1805
NspI	RCATGY	1 cut(s)	1750
NspV	TTCGAA	2 cut(s)	1636, 2701
OliI	CACNNNNGTG	1 cut(s)	2636
PaqCI	CACCTGC	1 cut(s)	1489
PciI	ACATGT	1 cut(s)	1746
PctI	GAATGC	2 cut(s)	193, 1000
PdmI	GAANNNNTTC	2 cut(s)	1632, 1686
PfeI	GAWTC	8 cut(s)	28, 47, 606, 1311, 1343, 1542, 2785, 2929
PinAI	ACCGGT	1 cut(s)	536
PkrI	GCNGC	6 cut(s)	700, 703, 807, 1081, 1084, 1555
PleI	GAGTC	2 cut(s)	519, 1246
PpsI	GAGTC	2 cut(s)	519, 1246
PpuMI	RGGWCCY	1 cut(s)	1252
PscI	ACATGT	1 cut(s)	1746
PshAI	GACNNNNGTC	2 cut(s)	464, 2175
PshBI	ATTAAT	1 cut(s)	1299
PsiI	TTATAA	1 cut(s)	2516
Psp124BI	GAGCTC	1 cut(s)	105
Psp1406I	AACGTT	1 cut(s)	2298
Psp5II	RGGWCCY	1 cut(s)	1252
Psp6I	CCWGG	1 cut(s)	733
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	5 cut(s)	37, 77, 124, 549, 1254
PspPI	GGNCC	6 cut(s)	36, 547, 731, 1252, 2438, 2719
PspPPI	RGGWCCY	1 cut(s)	1252
PstNI	CAGNNNCTG	1 cut(s)	2554
PsuI	RGATCY	3 cut(s)	75, 287, 2132
PvuII	CAGCTG	3 cut(s)	1082, 1766, 2468
RsaI	GTAC	5 cut(s)	124, 143, 968, 1618, 1887
RsaNI	GTAC	5 cut(s)	123, 142, 967, 1617, 1886
RseI	CAYNNNNRTG	2 cut(s)	1751, 2636
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	7 cut(s)	1271, 1299, 1508, 1881, 2211, 2351, 2938
SatI	GCNGC	6 cut(s)	699, 702, 806, 1080, 1083, 1554
Sau96I	GGNCC	6 cut(s)	36, 547, 731, 1252, 2438, 2719
SchI	GAGTC	2 cut(s)	520, 1247
ScrFI	CCNGG	1 cut(s)	735
SduI	GDGCHC	4 cut(s)	105, 157, 679, 2158
SfaNI	GCATC	5 cut(s)	32, 787, 1142, 1957, 2137
SfcI	CTRYAG	2 cut(s)	1361, 2256
SfuI	TTCGAA	2 cut(s)	1636, 2701
SinI	GGWCC	4 cut(s)	36, 1252, 2438, 2719
SmiMI	CAYNNNNRTG	2 cut(s)	1751, 2636
SmlI	CTYRAG	4 cut(s)	134, 517, 1122, 1235
SmoI	CTYRAG	4 cut(s)	134, 517, 1122, 1235
SpeI	ACTAGT	1 cut(s)	619
SsiI	CCGC	7 cut(s)	212, 701, 805, 889, 1756, 1850, 2101
SspI	AATATT	2 cut(s)	2335, 2448
SspMI	CTAG	4 cut(s)	620, 771, 1449, 1971
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	733
StyI	CCWWGG	2 cut(s)	1779, 2262
TaiI	ACGT	2 cut(s)	1836, 2301
TaqI	TCGA	9 cut(s)	5, 26, 157, 201, 604, 1636, 2688, 2701, 2880
TatI	WGTACW	2 cut(s)	141, 1616
TauI	GCSGC	2 cut(s)	704, 808
TfiI	GAWTC	8 cut(s)	28, 47, 606, 1311, 1343, 1542, 2785, 2929
Tru1I	TTAA	7 cut(s)	1271, 1299, 1508, 1881, 2211, 2351, 2938
Tru9I	TTAA	7 cut(s)	1271, 1299, 1508, 1881, 2211, 2351, 2938
TseFI	GTSAC	5 cut(s)	218, 512, 611, 1654, 1805
TseI	GCWGC	4 cut(s)	698, 1079, 1082, 1553
Tsp45I	GTSAC	5 cut(s)	218, 512, 611, 1654, 1805
TspDTI	ATGAA	9 cut(s)	83, 581, 1081, 1516, 1534, 1662, 1739, 1748, 1949
TspGWI	ACGGA	9 cut(s)	321, 332, 496, 599, 673, 1265, 1484, 1492, 2740
VneI	GTGCAC	1 cut(s)	2154
VpaK11BI	GGWCC	4 cut(s)	36, 1252, 2438, 2719
VspI	ATTAAT	1 cut(s)	1299
XapI	RAATTY	5 cut(s)	278, 850, 899, 1421, 2690
XceI	RCATGY	1 cut(s)	1750
XmiI	GTMKAC	2 cut(s)	2063, 2713
XmnI	GAANNNNTTC	2 cut(s)	1632, 1686
XspI	CTAG	4 cut(s)	620, 771, 1449, 1971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.