Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

13598191 .. 13628214

Gene Structure 30024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00343860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2595 bp

ATGAATCACTCAATTGGGTTGCCTTATAACCCAAGCAATGACTTGGAGACTGGTCTGAAGGAGGATCATGTTGAGCGCATGAACCGGTGGACGCAAGCGAAACTATATCTGAAAGCATTGCACCGATTCCGTCACACACTAGTCCTGAAAAAGGCAGAAGAAAAGAAGCAGGCAGCACGGAAACTACTTAGAGCACATACCCAAGCCCTACGAGCTGCGGCTGTCTTCAAAGAAGTTGCAGATCAAGTTAAAGGGTCTGGTGATTATTTTCCAATTGAACCAGATGAACTTGCTCGTTTGACGAGGAGTAGTGATGTTGATGCTCTGCAGCAATATGGGGGGCAAGAAGGCTTGGCAGATTTACTGAAAACAGATTTAGACAAGGGAATTGATGGGGATGATTTACTAAAGCGGACAATTAAATTTGGATCAAACATATATCCTCCAAAAACAGCAATGAGCCACTGGACATGTCTTCGGGAAGCTCTGTACGATTTTACTCGGATCGTTTTGGTGATTGCTTTTATGGGTTCTGTTGTGATGGGTATTCTGGAAGAGACTAAAAAGCTAGGATGGCAGGATGTGTTCAGCGTTGCTATTGCAGCTGCCATGTTCATTCTTATCACAGTCTTATCTGAGTATATTCAAGCTCGTCAGTTCCAGCATATGATTATCAGGGAGGAAATCAGAAACATAAAATTGAAGGTTATTAGAGCTGGTCGACAAGTTGTGGTTTCTAATTGTGATATTGTTGTTGGTGATGTTCTACCTCTTAAGACTGGTGATGAGGTCCCTGCTGATGGCATTTTAATCTGTGGTCGCTCACTTGCAATTGATAAGAGTAGAGTCACTGGAGAGAGCAAGATTTTTCACAAGGATTCAAGGAACCCATTTCTACTATCTGGCTGGAAAGTAGCACATGGTAGTGCTACTATGCTGGTAACTGGGGTTGGGAAATGTACTGAATCAGGAATTCTCAGGGCTAACACTTATTCAAAAGACACCGAGAATAAAACCCCCTTGCAGGTGCTTTTAAAGGAGGTTGCTACTTTCATGGGTGCTGTCGGATTCATGGGTGCTGCCATTGTTGCATATGTTGTTTGGTTCAGAGACTTCATTACTGGTGATAATTCAAATGGAAGTCCTGAACCTGGAAGTACACTTGAAGAAGTGATTAGAATTAGTACCATTGCAGTTGCCATTTTTGTCGTTGCATTACCTGAAGTGCTTCCTTCAGCTTTCAACATAAGCCGTCTCAGCACAATGAAAAAGATGAAGGCAGACAATGCCTTGGTGCGGAGGCCAGCTGTATGTGAAACCATGGCCTTATGCAATGATGCACTTTGTGACAAGACTGGAATAACTTTGAACCAGATGACTGTTTCTGAGGCCTATGCTGGTGAGAAGAAAATCAATTTTGCTGACAGCACAAGCAACTTGCCTCCGATACTATCGTCCTTACTTGTTGAAGGAATTACTCAGAATACGAGTGGCAGTCTATCTGTGCTTGGGAATGGTGATGTTCAGGCTTCTGGATCACCAATTGATAGGGCAATTCTGCATTGGGGAGTCAAGCTGGGAATGAATTTTGATGATATAATGTCTCAGTCTCCAGTTATGCAAGTTTTGCCATTCAGTTCAGAGAAAAAACGAGGTGGTGTTGCACTTAATCTGACACATGGTCGAGTTCATGTACACTGGAAAGGGGCAGCTGAAGGAGTCTTGGCCTCATGTACAAGATACATTGGGGCTAATGATCAGGTTTTACCAATGGATGATGAGAAGGTTGTAGAAAATAGTTTTCTTATACGGAATAGTTACATGTTAACATTTTTTCAAAAAGCTATCGAGGATATGACTTCTGGAGGTTTGCATTGCGTTGCTATTGCATATAGATCACTTGAATTGGAAAATGTTCTAATCAATAGTAATGGACAACTAGCGCAGTGGGAACTACCTGAGGATGACCTCATTTTACTAGCTATTGTTGGTATGAAGGATGATAGTCAACCGGGGATCAAGGACTCAGTGGAAATATTGCAAAGAGCTGGCATTAAGGTACGCCTTGTTACGCATGACAATCGTCAAACTGCAAAAGCAATTGCTAAGGAATGTAGCATACTTGCTTCTGATGGGTCAGATGTTAGTGAGGAAAATCTTATTGAAGGAAAAGTGTTCCGAGAACTTTCTGATAGTCAGAGAGAAGGATTAGCGGAGAAGATTTTGGTAATGGCACGGTCTTCCCCCAATGACAAGCTTTTGCTTGTGCGAGCACTGCAGAAAAGAGGAAAGATTGTTGCTGTCACTGGATATGTCAGTAATGATGCTCATGCACTACATGAGGCCGACATTGGTCTTGCTATGGGTATTCAAAGGACTGAAGTTGTTAAAGAGAGTTCAGATATCATAATCTTGGATGACAATTTTGCTACAGTAGCCAAGTTTGTGTGGGTGAATGTTATCATATTTGGTCTTGGACCACTGGCACTGGCTACTGAATCTCCGGCTGATCACCTGATGACCGTACCCCCTATTGACCGAGGGCTTGACTGGAAAGAGTGGCAGTTTTCGCTGACTCTTGGCATTGTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

864

Amino Acids

94.77

Weight (kDa)

6.05

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	112 - 174	2e-07	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	233 - 324	2e-15	P-type ATPase actuator domain
Cation_ATPase	PF13246	490 - 670	1.2e-21	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	659 - 783	4.3e-06	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	27
AarI	CACCTGC	1 cut(s)	1015
Acc36I	ACCTGC	1 cut(s)	1015
AccI	GTMKAC	1 cut(s)	721
AciI	CCGC	4 cut(s)	218, 412, 1297, 2213
AclWI	GGATC	5 cut(s)	72, 436, 512, 1543, 2024
AcsI	RAATTY	3 cut(s)	422, 972, 1585
AcuI	CTGAAG	5 cut(s)	77, 1218, 1242, 1734, 2400
AdeI	CACNNNGTG	1 cut(s)	1346
AfaI	GTAC	8 cut(s)	491, 961, 1159, 1186, 1695, 1735, 2061, 2526
AfiI	CCNNNNNNNGG	5 cut(s)	151, 800, 1024, 1151, 1296
AflII	CTTAAG	1 cut(s)	773
AflIII	ACRYGT	2 cut(s)	470, 1821
AgeI	ACCGGT	1 cut(s)	84
AhdI	GACNNNNNGTC	1 cut(s)	1680
AhlI	ACTAGT	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	1150
Alw21I	GWGCWC	2 cut(s)	196, 2275
Alw26I	GTCTC	6 cut(s)	41, 551, 1104, 1259, 1608, 1614
AlwI	GGATC	5 cut(s)	72, 436, 512, 1543, 2024
AoxI	GGCC	5 cut(s)	1301, 1323, 1389, 1725, 2343
ApeKI	GCWGC	7 cut(s)	173, 215, 328, 602, 605, 1079, 1709
ApoI	RAATTY	3 cut(s)	422, 972, 1585
AsiGI	ACCGGT	1 cut(s)	84
Asp700I	GAANNNNTTC	2 cut(s)	1227, 1914
AspLEI	GCGC	2 cut(s)	78, 1945
AspS9I	GGNCC	2 cut(s)	790, 2477
AsuC2I	CCSGG	1 cut(s)	2013
AvaII	GGWCC	2 cut(s)	790, 2477
AxyI	CCTNAGG	1 cut(s)	1959
BaeI	ACNNNNGTAYC	2 cut(s)	1439, 1472
BbsI	GAAGAC	3 cut(s)	217, 467, 2232
Bbv12I	GWGCWC	2 cut(s)	196, 2275
BbvI	GCAGC	7 cut(s)	185, 202, 340, 592, 614, 1066, 1721
BccI	CCATC	5 cut(s)	386, 535, 567, 794, 2126
BceAI	ACGGC	1 cut(s)	1236
BcgI	CGANNNNNNTGC	2 cut(s)	2063, 2097
BciT130I	CCWGG	1 cut(s)	1152
BclI	TGATCA	2 cut(s)	1756, 2509
BcnI	CCSGG	1 cut(s)	2013
BcoDI	GTCTC	6 cut(s)	41, 551, 1104, 1259, 1608, 1614
BcuI	ACTAGT	1 cut(s)	139
BfaI	CTAG	4 cut(s)	140, 569, 1940, 1979
BfmI	CTRYAG	3 cut(s)	326, 2276, 2430
BfrI	CTTAAG	1 cut(s)	773
BfuAI	ACCTGC	1 cut(s)	1015
BisI	GCNGC	8 cut(s)	174, 216, 219, 329, 603, 606, 1080, 1710
BlsI	GCNGC	8 cut(s)	175, 217, 220, 330, 604, 607, 1081, 1711
Bme1390I	CCNGG	2 cut(s)	1152, 2013
Bme18I	GGWCC	2 cut(s)	790, 2477
BmeRI	GACNNNNNGTC	1 cut(s)	1680
BmgT120I	GGNCC	2 cut(s)	790, 2477
BmiI	GGNNCC	2 cut(s)	792, 887
BmrFI	CCNGG	2 cut(s)	1152, 2013
BmrI	ACTGGG	1 cut(s)	954
BmsI	GCATC	3 cut(s)	310, 1327, 2314
BmuI	ACTGGG	1 cut(s)	954
BoxI	GACNNNNGTC	2 cut(s)	2082, 2352
BpiI	GAAGAC	3 cut(s)	217, 467, 2232
BpmI	CTGGAG	3 cut(s)	873, 1596, 1884
Bpu10I	CCTNAGC	1 cut(s)	2106
BpuMI	CCSGG	1 cut(s)	2013
BsaJI	CCNNGG	4 cut(s)	1290, 1320, 2012, 2539
BsaWI	WCCGGW	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	2485, 2515
Bsc4I	CCNNNNNNNGG	5 cut(s)	151, 800, 1024, 1151, 1296
Bse118I	RCCGGY	1 cut(s)	84
Bse21I	CCTNAGG	1 cut(s)	1959
Bse3DI	GCAATG	6 cut(s)	43, 116, 462, 1188, 1339, 1873
BseBI	CCWGG	1 cut(s)	1152
BseDI	CCNNGG	4 cut(s)	1290, 1320, 2012, 2539
BseGI	GGATG	7 cut(s)	403, 578, 586, 1780, 1969, 2005, 2422
BseLI	CCNNNNNNNGG	5 cut(s)	151, 800, 1024, 1151, 1296
BseMI	GCAATG	6 cut(s)	43, 116, 462, 1188, 1339, 1873
BseMII	CTCAG	8 cut(s)	627, 991, 1270, 1377, 1493, 1619, 1950, 2040
BseRI	GAGGAG	1 cut(s)	319
BseXI	GCAGC	7 cut(s)	185, 202, 340, 592, 614, 1066, 1721
BseYI	CCCAGC	1 cut(s)	1576
BshFI	GGCC	5 cut(s)	1303, 1325, 1391, 1727, 2345
BshTI	ACCGGT	1 cut(s)	84
BsiHKAI	GWGCWC	2 cut(s)	196, 2275
BsiSI	CCGG	3 cut(s)	85, 2012, 2504
BslFI	GGGAC	1 cut(s)	776
BslI	CCNNNNNNNGG	5 cut(s)	151, 800, 1024, 1151, 1296
BsmAI	GTCTC	6 cut(s)	41, 551, 1104, 1259, 1608, 1614
BsmBI	CGTCTC	1 cut(s)	1259
BsmFI	GGGAC	1 cut(s)	776
BsnI	GGCC	5 cut(s)	1303, 1325, 1391, 1727, 2345
Bsp1286I	GDGCHC	2 cut(s)	196, 2275
Bsp1407I	TGTACA	2 cut(s)	1693, 1733
Bsp143I	GATC	9 cut(s)	64, 241, 428, 504, 1535, 1756, 1895, 2016, 2509
Bsp19I	CCATGG	1 cut(s)	1320
BspACI	CCGC	4 cut(s)	218, 412, 1297, 2213
BspANI	GGCC	5 cut(s)	1303, 1325, 1391, 1727, 2345
BspCNI	CTCAG	8 cut(s)	628, 990, 1269, 1378, 1492, 1618, 1951, 2039
BspLI	GGNNCC	2 cut(s)	792, 887
BspMAI	CTGCAG	2 cut(s)	330, 2280
BspMI	ACCTGC	1 cut(s)	1015
BspPI	GGATC	5 cut(s)	72, 436, 512, 1543, 2024
BspTI	CTTAAG	1 cut(s)	773
BsrDI	GCAATG	6 cut(s)	43, 116, 462, 1188, 1339, 1873
BsrFI	RCCGGY	1 cut(s)	84
BsrGI	TGTACA	2 cut(s)	1693, 1733
BssAI	RCCGGY	1 cut(s)	84
BssECI	CCNNGG	4 cut(s)	1290, 1320, 2012, 2539
BssMI	GATC	9 cut(s)	64, 241, 428, 504, 1535, 1756, 1895, 2016, 2509
BssT1I	CCWWGG	2 cut(s)	1290, 1320
Bst2UI	CCWGG	1 cut(s)	1152
Bst4CI	ACNGT	5 cut(s)	628, 1381, 2238, 2434, 2524
Bst6I	CTCTTC	1 cut(s)	549
BstAFI	CTTAAG	1 cut(s)	773
BstAPI	GCANNNNNTGC	2 cut(s)	1286, 1627
BstAUI	TGTACA	2 cut(s)	1693, 1733
BstC8I	GCNNGC	5 cut(s)	96, 171, 1305, 2050, 2271
BstDSI	CCRYGG	1 cut(s)	1320
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstF5I	GGATG	7 cut(s)	403, 578, 586, 1780, 1969, 2005, 2422
BstHHI	GCGC	2 cut(s)	78, 1945
BstKTI	GATC	9 cut(s)	67, 244, 431, 507, 1538, 1759, 1898, 2019, 2512
BstMAI	GTCTC	6 cut(s)	41, 551, 1104, 1259, 1608, 1614
BstMBI	GATC	9 cut(s)	64, 241, 428, 504, 1535, 1756, 1895, 2016, 2509
BstNI	CCWGG	1 cut(s)	1152
BstNSI	RCATGY	2 cut(s)	474, 1825
BstPAI	GACNNNNGTC	2 cut(s)	2082, 2352
BstSCI	CCNGG	2 cut(s)	1150, 2011
BstSFI	CTRYAG	3 cut(s)	326, 2276, 2430
BstV1I	GCAGC	7 cut(s)	185, 202, 340, 592, 614, 1066, 1721
BstV2I	GAAGAC	3 cut(s)	217, 467, 2232
Bsu36I	CCTNAGG	1 cut(s)	1959
BsuRI	GGCC	5 cut(s)	1303, 1325, 1391, 1727, 2345
BtgI	CCRYGG	1 cut(s)	1320
BtsCI	GGATG	7 cut(s)	403, 578, 586, 1780, 1969, 2005, 2422
BtsI	GCAGTG	2 cut(s)	1952, 2273
BtsIMutI	CAGTG	9 cut(s)	463, 849, 1696, 1952, 2034, 2273, 2304, 2480, 2486
BveI	ACCTGC	1 cut(s)	1015
Cac8I	GCNNGC	5 cut(s)	96, 171, 1305, 2050, 2271
CfoI	GCGC	2 cut(s)	78, 1945
Cfr10I	RCCGGY	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	790, 2477
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	8 cut(s)	490, 960, 1158, 1185, 1694, 1734, 2060, 2525
CspAI	ACCGGT	1 cut(s)	84
CviQI	GTAC	8 cut(s)	490, 960, 1158, 1185, 1694, 1734, 2060, 2525
DpnI	GATC	9 cut(s)	66, 243, 430, 506, 1537, 1758, 1897, 2018, 2511
DpnII	GATC	9 cut(s)	64, 241, 428, 504, 1535, 1756, 1895, 2016, 2509
DraI	TTTAAA	1 cut(s)	1035
DraIII	CACNNNGTG	1 cut(s)	1346
DriI	GACNNNNNGTC	1 cut(s)	1680
Eam1104I	CTCTTC	1 cut(s)	549
Eam1105I	GACNNNNNGTC	1 cut(s)	1680
EarI	CTCTTC	1 cut(s)	549
Eco130I	CCWWGG	2 cut(s)	1290, 1320
Eco147I	AGGCCT	1 cut(s)	1391
Eco32I	GATATC	1 cut(s)	2404
Eco47I	GGWCC	2 cut(s)	790, 2477
Eco57I	CTGAAG	5 cut(s)	77, 1218, 1242, 1734, 2400
Eco81I	CCTNAGG	1 cut(s)	1959
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	790
EcoRI	GAATTC	1 cut(s)	972
EcoRII	CCWGG	1 cut(s)	1150
EcoRV	GATATC	1 cut(s)	2404
EcoT14I	CCWWGG	2 cut(s)	1290, 1320
ErhI	CCWWGG	2 cut(s)	1290, 1320
Esp3I	CGTCTC	1 cut(s)	1259
FaqI	GGGAC	1 cut(s)	776
FauNDI	CATATG	2 cut(s)	666, 1093
FbaI	TGATCA	2 cut(s)	1756, 2509
FblI	GTMKAC	1 cut(s)	721
Fnu4HI	GCNGC	8 cut(s)	174, 216, 219, 329, 603, 606, 1080, 1710
FokI	GGATG	7 cut(s)	410, 585, 593, 1787, 1976, 2012, 2429
Fsp4HI	GCNGC	8 cut(s)	174, 216, 219, 329, 603, 606, 1080, 1710
FspBI	CTAG	4 cut(s)	140, 569, 1940, 1979
GlaI	GCGC	2 cut(s)	77, 1944
GluI	GCNGC	8 cut(s)	174, 216, 219, 329, 603, 606, 1080, 1710
GsaI	CCCAGC	1 cut(s)	1580
GsuI	CTGGAG	3 cut(s)	873, 1596, 1884
HaeIII	GGCC	5 cut(s)	1303, 1325, 1391, 1727, 2345
HapII	CCGG	3 cut(s)	85, 2012, 2504
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	2 cut(s)	78, 1945
Hin6I	GCGC	2 cut(s)	76, 1943
HinP1I	GCGC	2 cut(s)	76, 1943
HincII	GTYRAC	3 cut(s)	722, 1827, 2009
HindII	GTYRAC	3 cut(s)	722, 1827, 2009
HindIII	AAGCTT	1 cut(s)	2255
HpaI	GTTAAC	1 cut(s)	1827
HpaII	CCGG	3 cut(s)	85, 2012, 2504
Hpy166II	GTNNAC	6 cut(s)	90, 722, 1160, 1696, 1827, 2009
Hpy188III	TCNNGA	7 cut(s)	145, 479, 551, 969, 1145, 1533, 1863
Hpy8I	GTNNAC	6 cut(s)	90, 722, 1160, 1696, 1827, 2009
HpyCH4III	ACNGT	5 cut(s)	628, 1381, 2238, 2434, 2524
HspAI	GCGC	2 cut(s)	76, 1943
Ksp22I	TGATCA	2 cut(s)	1756, 2509
KspAI	GTTAAC	1 cut(s)	1827
Kzo9I	GATC	9 cut(s)	64, 241, 428, 504, 1535, 1756, 1895, 2016, 2509
Lsp1109I	GCAGC	7 cut(s)	185, 202, 340, 592, 614, 1066, 1721
LweI	GCATC	3 cut(s)	310, 1327, 2314
MaeI	CTAG	4 cut(s)	140, 569, 1940, 1979
MaeIII	GTNAC	7 cut(s)	131, 847, 940, 1346, 1817, 2068, 2302
MalI	GATC	9 cut(s)	66, 243, 430, 506, 1537, 1758, 1897, 2018, 2511
MboI	GATC	9 cut(s)	64, 241, 428, 504, 1535, 1756, 1895, 2016, 2509
MboII	GAAGA	8 cut(s)	170, 217, 467, 566, 1178, 1417, 2230, 2232
MfeI	CAATTG	5 cut(s)	12, 273, 831, 1542, 2100
MhlI	GDGCHC	2 cut(s)	196, 2275
MlyI	GAGTC	5 cut(s)	855, 1578, 1728, 2018, 2569
MmeI	TCCRAC	1 cut(s)	1045
MroXI	GAANNNNTTC	2 cut(s)	1227, 1914
MseI	TTAA	9 cut(s)	249, 420, 774, 809, 1034, 1668, 1826, 2055, 2388
MslI	CAYNNNNRTG	1 cut(s)	924
MspA1I	CMGCKG	3 cut(s)	605, 1307, 1712
MspCI	CTTAAG	1 cut(s)	773
MspI	CCGG	3 cut(s)	85, 2012, 2504
MspR9I	CCNGG	2 cut(s)	1152, 2013
MunI	CAATTG	5 cut(s)	12, 273, 831, 1542, 2100
MvaI	CCWGG	1 cut(s)	1152
NciI	CCSGG	1 cut(s)	2013
NcoI	CCATGG	1 cut(s)	1320
NdeI	CATATG	2 cut(s)	666, 1093
NdeII	GATC	9 cut(s)	64, 241, 428, 504, 1535, 1756, 1895, 2016, 2509
NlaIV	GGNNCC	2 cut(s)	792, 887
NmuCI	GTSAC	4 cut(s)	131, 847, 1346, 2302
NspI	RCATGY	2 cut(s)	474, 1825
PaqCI	CACCTGC	1 cut(s)	1015
PceI	AGGCCT	1 cut(s)	1391
PciI	ACATGT	2 cut(s)	470, 1821
PdmI	GAANNNNTTC	2 cut(s)	1227, 1914
PfeI	GAWTC	6 cut(s)	4, 126, 878, 965, 1068, 2498
PinAI	ACCGGT	1 cut(s)	84
PkrI	GCNGC	8 cut(s)	175, 217, 220, 330, 604, 607, 1081, 1711
PleI	GAGTC	5 cut(s)	854, 1577, 1727, 2018, 2569
PpsI	GAGTC	5 cut(s)	854, 1577, 1727, 2018, 2569
PpuMI	RGGWCCY	1 cut(s)	790
PscI	ACATGT	2 cut(s)	470, 1821
PshAI	GACNNNNGTC	2 cut(s)	2082, 2352
PsiI	TTATAA	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	790
Psp6I	CCWGG	1 cut(s)	1150
PspFI	CCCAGC	1 cut(s)	1576
PspGI	CCWGG	1 cut(s)	1150
PspN4I	GGNNCC	2 cut(s)	792, 887
PspPI	GGNCC	2 cut(s)	790, 2477
PspPPI	RGGWCCY	1 cut(s)	790
PstI	CTGCAG	2 cut(s)	330, 2280
PvuII	CAGCTG	3 cut(s)	605, 1307, 1712
RsaI	GTAC	8 cut(s)	491, 961, 1159, 1186, 1695, 1735, 2061, 2526
RsaNI	GTAC	8 cut(s)	490, 960, 1158, 1185, 1694, 1734, 2060, 2525
RseI	CAYNNNNRTG	1 cut(s)	924
SalI	GTCGAC	1 cut(s)	720
SaqAI	TTAA	9 cut(s)	249, 420, 774, 809, 1034, 1668, 1826, 2055, 2388
SatI	GCNGC	8 cut(s)	174, 216, 219, 329, 603, 606, 1080, 1710
Sau3AI	GATC	9 cut(s)	64, 241, 428, 504, 1535, 1756, 1895, 2016, 2509
Sau96I	GGNCC	2 cut(s)	790, 2477
SchI	GAGTC	5 cut(s)	855, 1578, 1728, 2018, 2569
ScrFI	CCNGG	2 cut(s)	1152, 2013
SduI	GDGCHC	2 cut(s)	196, 2275
SfaNI	GCATC	3 cut(s)	310, 1327, 2314
SfcI	CTRYAG	3 cut(s)	326, 2276, 2430
SinI	GGWCC	2 cut(s)	790, 2477
SmiMI	CAYNNNNRTG	1 cut(s)	924
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
SpeI	ACTAGT	1 cut(s)	139
SseBI	AGGCCT	1 cut(s)	1391
SsiI	CCGC	4 cut(s)	218, 412, 1297, 2213
SspI	AATATT	1 cut(s)	2037
SspMI	CTAG	4 cut(s)	140, 569, 1940, 1979
StuI	AGGCCT	1 cut(s)	1391
StyD4I	CCNGG	2 cut(s)	1150, 2011
StyI	CCWWGG	2 cut(s)	1290, 1320
TaaI	ACNGT	5 cut(s)	628, 1381, 2238, 2434, 2524
TaqI	TCGA	4 cut(s)	721, 1684, 1848, 2589
TaqII	GACCGA	1 cut(s)	2553
TatI	WGTACW	4 cut(s)	959, 1157, 1693, 1733
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	6 cut(s)	4, 126, 878, 965, 1068, 2498
Tru1I	TTAA	9 cut(s)	249, 420, 774, 809, 1034, 1668, 1826, 2055, 2388
Tru9I	TTAA	9 cut(s)	249, 420, 774, 809, 1034, 1668, 1826, 2055, 2388
TscAI	CASTG	9 cut(s)	470, 856, 1703, 1952, 2034, 2280, 2311, 2487, 2493
TseFI	GTSAC	4 cut(s)	131, 847, 1346, 2302
TseI	GCWGC	7 cut(s)	173, 215, 328, 602, 605, 1079, 1709
Tsp45I	GTSAC	4 cut(s)	131, 847, 1346, 2302
TspGWI	ACGGA	3 cut(s)	119, 193, 1825
TspRI	CASTG	9 cut(s)	470, 856, 1703, 1952, 2034, 2280, 2311, 2487, 2493
Vha464I	CTTAAG	1 cut(s)	773
VpaK11BI	GGWCC	2 cut(s)	790, 2477
XagI	CCTNNNNNAGG	1 cut(s)	149
XapI	RAATTY	3 cut(s)	422, 972, 1585
XceI	RCATGY	2 cut(s)	474, 1825
XmiI	GTMKAC	1 cut(s)	721
XmnI	GAANNNNTTC	2 cut(s)	1227, 1914
XspI	CTAG	4 cut(s)	140, 569, 1940, 1979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.