Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

18881901 .. 18896261

Gene Structure 14361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG090100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGTATACTTTTCTCCAGATCCTGATGGCAAGGAACTTTTCTTGCAATCTGTTGGAAAGATCTTCCCTCGCGTTGACAAATTTCTTCCCTCGGGCCACACAAAGAAGACAGCATCAGTTGCATCCATATCGGTGTTCTTGGTCTGGAGGGGAGACTACAACACCGGCTCACAGAAGGATGAATCACTCAATTGGGTTGCCTTATAACCCAAGCAATGACTTGGAGACCGGTCTGAAGGAGGATCATGTTGAGCGCATGAACCGGTGGACGCAAGCGAAACTATATCTGAAAGCATTGCACCGATTCCGTCACACACTAGTCCTGAAAAAGGCAGAAGAAAAGAAGCAGGCAGCAAAGAAACTACTTAGAGTACATACCCAAGCCCTACGAGCTGCGGCTATCTTCAAAGAAGTTGCAGATCAAGTGAAAGGGTCTGGTGATTATTTTCCAATTGAACCAGATGAACTTGCTCGTTTGACGAGGAGTAGTGATGTTGATGCTCTGCAGCAATATGGGGGGAAGGAAGGCTTGGCAGATTTACTGAAAACAGATTTAGACAAGGGAATTGATGGGGATGATTTACTAAAGCGGACAATTAAATTTGGATCAAACATATACCCTCCAAAAACAGCAATGAGCCACTGGACATGTCTTCGGGAAGCTCTGTATAATTTTACTCGGATCGTTTTGGTGATTGCTTTTATGGGTTCTGTTGTGATGGGTATTCTGGAAGAGACTAAAAAGCTGGGATGGCACGATGTGTTCAGCGTTGCTATTGCAGCTGCCATGTTCATTCTTATCACAGTCTTATCTGAGTATATTCAAGCTCGTCAGTTCCAGCATATGATCATCAGGGAGGAAATCAGAAACATAAAATTGAAGGTAGTCAATGTTCGTCCTTTCGGTGCATCAGCATCCAAGTCTCAGTTGAGGCTACGATTTCAAATTCTCTGTACTCTTCCTGCTCTTGCGTGGAGAATGGAGAGTGATAATATTTCATCAATGTTACATTCTTGGAAAGCCAGAATATGTGTCCTGGGTGTTGTGGAAAACGATGGGGAAGTAAATTTTTACGGCTTCACTAAGTGGGATAGTATATCAACCTCATCAAAATTGACCAAAGACTTCTTTACTGGTGATAATTCAAATGGAAGTCCTGAACCTGGAAGTACACTTGAAGAAGTGATTAGAATTAGTACCATTGCAGTTGCCATTTTTGTCGTTGCATTACCTGAAGTGCTTCCTTCAGCTTTCAACATAAGCCGTCTCAGCACAATGAAAAAGATGAAGGCAGACAATGCCTTG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

435

Amino Acids

49.27

Weight (kDa)

9.49

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	171 - 233	3.8e-08	Cation transporter/ATPase, N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	204
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	71
AciI	CCGC	2 cut(s)	395, 589
AclWI	GGATC	4 cut(s)	13, 249, 613, 689
AcsI	RAATTY	4 cut(s)	79, 599, 945, 1066
AcuI	CTGAAG	3 cut(s)	254, 1230, 1254
AdeI	CACNNNGTG	2 cut(s)	760, 1086
AfaI	GTAC	4 cut(s)	372, 955, 1171, 1198
AfiI	CCNNNNNNNGG	2 cut(s)	328, 1163
AflIII	ACRYGT	1 cut(s)	647
AgeI	ACCGGT	2 cut(s)	227, 261
AgsI	TTSAA	8 cut(s)	406, 455, 824, 880, 944, 1146, 1178, 1255
AhlI	ACTAGT	1 cut(s)	316
AjnI	CCWGG	2 cut(s)	1035, 1162
AjuI	GAANNNNNNNTTGG	2 cut(s)	512, 544
AluBI	AGCT	6 cut(s)	392, 662, 745, 782, 827, 1250
AluI	AGCT	6 cut(s)	392, 662, 745, 782, 827, 1250
Alw26I	GTCTC	5 cut(s)	146, 218, 728, 927, 1271
AlwI	GGATC	4 cut(s)	13, 249, 613, 689
AlwNI	CAGNNNCTG	1 cut(s)	22
Ama87I	CYCGRG	1 cut(s)	90
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	5 cut(s)	350, 392, 505, 779, 782
ApoI	RAATTY	4 cut(s)	79, 599, 945, 1066
AsiGI	ACCGGT	2 cut(s)	227, 261
Asp700I	GAANNNNTTC	1 cut(s)	1239
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	93
AsuHPI	GGTGA	3 cut(s)	449, 703, 1148
AvaI	CYCGRG	1 cut(s)	90
BbsI	GAAGAC	2 cut(s)	112, 644
BbvI	GCAGC	5 cut(s)	362, 379, 517, 769, 791
BccI	CCATC	5 cut(s)	19, 563, 712, 744, 1049
BceAI	ACGGC	2 cut(s)	1090, 1248
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	2 cut(s)	1037, 1164
BclI	TGATCA	1 cut(s)	846
BcoDI	GTCTC	5 cut(s)	146, 218, 728, 927, 1271
BcuI	ACTAGT	1 cut(s)	316
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	503
BglII	AGATCT	1 cut(s)	59
BisI	GCNGC	6 cut(s)	351, 393, 396, 506, 780, 783
BlsI	GCNGC	6 cut(s)	352, 394, 397, 507, 781, 784
Bme1390I	CCNGG	2 cut(s)	1037, 1164
BmeT110I	CYCGRG	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	93
BmrFI	CCNGG	2 cut(s)	1037, 1164
BmsI	GCATC	5 cut(s)	121, 130, 487, 917, 923
BpiI	GAAGAC	2 cut(s)	112, 644
BpmI	CTGGAG	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	89, 1036
BsaWI	WCCGGW	2 cut(s)	227, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 1163
Bse118I	RCCGGY	3 cut(s)	163, 227, 261
Bse1I	ACTGG	2 cut(s)	647, 1138
Bse3DI	GCAATG	4 cut(s)	220, 293, 639, 1200
BseBI	CCWGG	2 cut(s)	1037, 1164
BseDI	CCNNGG	2 cut(s)	89, 1036
BseGI	GGATG	5 cut(s)	121, 183, 580, 755, 914
BseLI	CCNNNNNNNGG	2 cut(s)	328, 1163
BseMI	GCAATG	4 cut(s)	220, 293, 639, 1200
BseMII	CTCAG	3 cut(s)	804, 938, 1282
BseNI	ACTGG	2 cut(s)	647, 1138
BseRI	GAGGAG	1 cut(s)	496
BseXI	GCAGC	5 cut(s)	362, 379, 517, 769, 791
BseYI	CCCAGC	1 cut(s)	745
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	95
BshTI	ACCGGT	2 cut(s)	227, 261
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	3 cut(s)	164, 228, 262
BslI	CCNNNNNNNGG	2 cut(s)	328, 1163
BsmAI	GTCTC	5 cut(s)	146, 218, 728, 927, 1271
BsmBI	CGTCTC	1 cut(s)	1271
BsnI	GGCC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	90
Bsp143I	GATC	7 cut(s)	18, 59, 241, 418, 605, 681, 846
BspACI	CCGC	2 cut(s)	395, 589
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	3 cut(s)	805, 937, 1281
BspFNI	CGCG	1 cut(s)	71
BspMAI	CTGCAG	1 cut(s)	507
BspPI	GGATC	4 cut(s)	13, 249, 613, 689
BspTNI	GGTCTC	1 cut(s)	218
BsrDI	GCAATG	4 cut(s)	220, 293, 639, 1200
BsrFI	RCCGGY	3 cut(s)	163, 227, 261
BsrI	ACTGG	2 cut(s)	647, 1138
BssAI	RCCGGY	3 cut(s)	163, 227, 261
BssECI	CCNNGG	2 cut(s)	89, 1036
BssMI	GATC	7 cut(s)	18, 59, 241, 418, 605, 681, 846
BssNAI	GTATAC	1 cut(s)	6
Bst1107I	GTATAC	1 cut(s)	6
Bst2UI	CCWGG	2 cut(s)	1037, 1164
Bst4CI	ACNGT	1 cut(s)	805
Bst6I	CTCTTC	2 cut(s)	726, 963
BstAPI	GCANNNNNTGC	2 cut(s)	118, 1298
BstC8I	GCNNGC	2 cut(s)	273, 348
BstDEI	CTNAG	5 cut(s)	365, 813, 924, 1083, 1268
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstF5I	GGATG	5 cut(s)	121, 183, 580, 755, 914
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	7 cut(s)	21, 62, 244, 421, 608, 684, 849
BstMAI	GTCTC	5 cut(s)	146, 218, 728, 927, 1271
BstMBI	GATC	7 cut(s)	18, 59, 241, 418, 605, 681, 846
BstMWI	GCNNNNNNNGC	6 cut(s)	118, 389, 751, 779, 1269, 1298
BstNI	CCWGG	2 cut(s)	1037, 1164
BstNSI	RCATGY	1 cut(s)	651
BstSCI	CCNGG	2 cut(s)	1035, 1162
BstSFI	CTRYAG	1 cut(s)	503
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	5 cut(s)	362, 379, 517, 769, 791
BstV2I	GAAGAC	2 cut(s)	112, 644
BstX2I	RGATCY	2 cut(s)	18, 59
BstYI	RGATCY	2 cut(s)	18, 59
BstZ17I	GTATAC	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	5 cut(s)	121, 183, 580, 755, 914
BtsIMutI	CAGTG	1 cut(s)	640
Cac8I	GCNNGC	2 cut(s)	273, 348
CaiI	CAGNNNCTG	1 cut(s)	22
CfoI	GCGC	1 cut(s)	255
Cfr10I	RCCGGY	3 cut(s)	163, 227, 261
Cfr13I	GGNCC	1 cut(s)	93
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	4 cut(s)	371, 954, 1170, 1197
CspAI	ACCGGT	2 cut(s)	227, 261
CviAII	CATG	4 cut(s)	245, 256, 648, 787
CviQI	GTAC	4 cut(s)	371, 954, 1170, 1197
DdeI	CTNAG	5 cut(s)	365, 813, 924, 1083, 1268
DpnI	GATC	7 cut(s)	20, 61, 243, 420, 607, 683, 848
DpnII	GATC	7 cut(s)	18, 59, 241, 418, 605, 681, 846
DraIII	CACNNNGTG	2 cut(s)	760, 1086
Eam1104I	CTCTTC	2 cut(s)	726, 963
EarI	CTCTTC	2 cut(s)	726, 963
Eco31I	GGTCTC	1 cut(s)	218
Eco57I	CTGAAG	3 cut(s)	254, 1230, 1254
Eco88I	CYCGRG	1 cut(s)	90
EcoNI	CCTNNNNNAGG	1 cut(s)	326
EcoRII	CCWGG	2 cut(s)	1035, 1162
Esp3I	CGTCTC	1 cut(s)	1271
FaeI	CATG	4 cut(s)	248, 259, 651, 790
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FatI	CATG	4 cut(s)	244, 255, 647, 786
FauNDI	CATATG	1 cut(s)	843
FbaI	TGATCA	1 cut(s)	846
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	6 cut(s)	351, 393, 396, 506, 780, 783
FokI	GGATG	5 cut(s)	108, 190, 587, 762, 901
Fsp4HI	GCNGC	6 cut(s)	351, 393, 396, 506, 780, 783
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	6 cut(s)	351, 393, 396, 506, 780, 783
GsaI	CCCAGC	1 cut(s)	749
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	3 cut(s)	164, 228, 262
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	4 cut(s)	248, 259, 651, 790
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HinfI	GANTC	2 cut(s)	181, 303
HpaII	CCGG	3 cut(s)	164, 228, 262
HphI	GGTGA	3 cut(s)	449, 703, 1148
Hpy166II	GTNNAC	4 cut(s)	6, 75, 267, 1172
Hpy188I	TCNGA	5 cut(s)	234, 288, 681, 814, 866
Hpy188III	TCNNGA	7 cut(s)	16, 22, 144, 322, 656, 728, 1157
Hpy8I	GTNNAC	4 cut(s)	6, 75, 267, 1172
HpyAV	CCTTC	7 cut(s)	168, 229, 514, 518, 874, 1254, 1282
HpyCH4III	ACNGT	1 cut(s)	805
HpyCH4V	TGCA	9 cut(s)	45, 121, 298, 416, 505, 779, 908, 1205, 1226
HpyF10VI	GCNNNNNNNGC	6 cut(s)	118, 389, 751, 779, 1269, 1298
HpyF3I	CTNAG	5 cut(s)	365, 813, 924, 1083, 1268
Hsp92II	CATG	4 cut(s)	248, 259, 651, 790
HspAI	GCGC	1 cut(s)	253
Ksp22I	TGATCA	1 cut(s)	846
Kzo9I	GATC	7 cut(s)	18, 59, 241, 418, 605, 681, 846
Lsp1109I	GCAGC	5 cut(s)	362, 379, 517, 769, 791
LweI	GCATC	5 cut(s)	121, 130, 487, 917, 923
MaeI	CTAG	1 cut(s)	317
MaeIII	GTNAC	2 cut(s)	308, 1005
MalI	GATC	7 cut(s)	20, 61, 243, 420, 607, 683, 848
MboI	GATC	7 cut(s)	18, 59, 241, 418, 605, 681, 846
MboII	GAAGA	9 cut(s)	54, 76, 117, 347, 394, 644, 743, 950, 1190
MfeI	CAATTG	2 cut(s)	189, 450
MflI	RGATCY	2 cut(s)	18, 59
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	9 cut(s)	77, 99, 140, 232, 474, 630, 850, 924, 1114
MroXI	GAANNNNTTC	1 cut(s)	1239
MseI	TTAA	1 cut(s)	597
MslI	CAYNNNNRTG	1 cut(s)	130
MspA1I	CMGCKG	1 cut(s)	782
MspI	CCGG	3 cut(s)	164, 228, 262
MspR9I	CCNGG	2 cut(s)	1037, 1164
MunI	CAATTG	2 cut(s)	189, 450
MvaI	CCWGG	2 cut(s)	1037, 1164
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	6 cut(s)	118, 389, 751, 779, 1269, 1298
NdeI	CATATG	1 cut(s)	843
NdeII	GATC	7 cut(s)	18, 59, 241, 418, 605, 681, 846
NlaIII	CATG	4 cut(s)	248, 259, 651, 790
NmuCI	GTSAC	1 cut(s)	308
NspI	RCATGY	1 cut(s)	651
PciI	ACATGT	1 cut(s)	647
PdmI	GAANNNNTTC	1 cut(s)	1239
PfeI	GAWTC	2 cut(s)	181, 303
PinAI	ACCGGT	2 cut(s)	227, 261
PkrI	GCNGC	6 cut(s)	352, 394, 397, 507, 781, 784
PscI	ACATGT	1 cut(s)	647
PsiI	TTATAA	1 cut(s)	204
Psp6I	CCWGG	2 cut(s)	1035, 1162
PspFI	CCCAGC	1 cut(s)	745
PspGI	CCWGG	2 cut(s)	1035, 1162
PspPI	GGNCC	1 cut(s)	93
PsrI	GAACNNNNNNTAC	2 cut(s)	876, 908
PstI	CTGCAG	1 cut(s)	507
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	2 cut(s)	18, 59
PvuII	CAGCTG	1 cut(s)	782
RsaI	GTAC	4 cut(s)	372, 955, 1171, 1198
RsaNI	GTAC	4 cut(s)	371, 954, 1170, 1197
RseI	CAYNNNNRTG	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	6 cut(s)	351, 393, 396, 506, 780, 783
Sau3AI	GATC	7 cut(s)	18, 59, 241, 418, 605, 681, 846
Sau96I	GGNCC	1 cut(s)	93
ScrFI	CCNGG	2 cut(s)	1037, 1164
SfaNI	GCATC	5 cut(s)	121, 130, 487, 917, 923
SfcI	CTRYAG	1 cut(s)	503
SmiMI	CAYNNNNRTG	1 cut(s)	130
SpeI	ACTAGT	1 cut(s)	316
SsiI	CCGC	2 cut(s)	395, 589
SspI	AATATT	1 cut(s)	994
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	1035, 1162
TaaI	ACNGT	1 cut(s)	805
TatI	WGTACW	3 cut(s)	370, 953, 1169
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	2 cut(s)	181, 303
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	1 cut(s)	647
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	5 cut(s)	350, 392, 505, 779, 782
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	7 cut(s)	194, 272, 477, 781, 987, 1292, 1301
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	1 cut(s)	647
XagI	CCTNNNNNAGG	1 cut(s)	326
XapI	RAATTY	4 cut(s)	79, 599, 945, 1066
XceI	RCATGY	1 cut(s)	651
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	1239
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.