Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Reverse (-)

1954960 .. 1956019

Gene Structure 1060 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0012100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGAGACATTTGAAGTAGAGTGGATGAGTAAGGCATCGGCTGATCAACGTAAAGGAAGAGCTGGAAGAACAGGGCCTGGCCACTGTCACCGCCTGTATTCTTCTGCAGTATATGATAATTTTCCTGAGTTTTCCGTACCTGAAATATCCAAAGTCCCTGTTGATGGTCTTGTCCTTCTACTGAAGTCCATGGATATCCACGAGGGATCAAATTTTCCATTATTTCCTACTCCTCCAGAGGGTGTGGTTGAAGCAGAGCTTTGCTTAAATCACCTTGGAGCACTTGATGAAAACAAAAGAGTGACATCTTTAGGGAAAGCCATGGCTTGTTTGAAGATATTTGCACAGAGCACTATGACTGATCAGGATGGAACTTACGAGCAAGAAAATGTAAAAGTTTCTGGTGAAGAACTTTTGAATGCTAGCAGTGATGCTCTGTCCATAGCTAATGCTTTGTGGTGCTATGAACTTTCCGAGAGGCCATCAGAATTCTGCAATGAAAATGCTCTACAACTGAAAACCATGGAAGAAATGTCCAAGCTGAGAAAGCAGCTGCTCAAACCTTTCTTTGATCAAAGGAGTTTTTCCGGAGGTGATGACGAGCTACGCAATTTTTCATGGATGTATGGAACTCTGGAAGATGTACAACATGCTTGGCATGATAAGAACCTTCTTGATAAAAATCCTCTTTCAATGAATGAGGAAAGGCTCTTGAGGCAAGGCTGGCAAGCTATCTGTGCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

248

Amino Acids

27.96

Weight (kDa)

4.94

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_HA2	PF04408	85 - 109	6.4e-07	Helicase associated domain (HA2), winged-helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	587
AciI	CCGC	1 cut(s)	91
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	2 cut(s)	211, 488
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	2 cut(s)	138, 645
AfiI	CCNNNNNNNGG	2 cut(s)	164, 239
AgsI	TTSAA	5 cut(s)	14, 251, 334, 418, 693
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	7 cut(s)	62, 259, 446, 541, 553, 604, 731
AluI	AGCT	7 cut(s)	62, 259, 446, 541, 553, 604, 731
Alw21I	GWGCWC	2 cut(s)	283, 353
AlwI	GGATC	1 cut(s)	214
AlwNI	CAGNNNCTG	1 cut(s)	77
Aor13HI	TCCGGA	1 cut(s)	587
AoxI	GGCC	3 cut(s)	74, 79, 479
ApeKI	GCWGC	2 cut(s)	550, 553
ApoI	RAATTY	2 cut(s)	211, 488
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	4 cut(s)	80, 263, 416, 605
AsuNHI	GCTAGC	1 cut(s)	422
BalI	TGGCCA	1 cut(s)	81
BauI	CACGAG	1 cut(s)	200
Bbv12I	GWGCWC	2 cut(s)	283, 353
BbvI	GCAGC	2 cut(s)	540, 562
BccI	CCATC	3 cut(s)	158, 362, 490
BciT130I	CCWGG	1 cut(s)	78
BclI	TGATCA	3 cut(s)	43, 361, 571
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	105
BisI	GCNGC	2 cut(s)	551, 554
BlsI	GCNGC	2 cut(s)	552, 555
Bme1390I	CCNGG	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	2 cut(s)	44, 421
BmtI	GCTAGC	1 cut(s)	426
BpmI	CTGGAG	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	733
BsaBI	GATNNNNATC	1 cut(s)	681
BsaJI	CCNNGG	4 cut(s)	189, 274, 321, 522
BsaWI	WCCGGW	1 cut(s)	587
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 239
Bse3DI	GCAATG	1 cut(s)	502
Bse8I	GATNNNNATC	1 cut(s)	681
BseAI	TCCGGA	1 cut(s)	587
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	4 cut(s)	189, 274, 321, 522
BseGI	GGATG	3 cut(s)	30, 373, 627
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	2 cut(s)	164, 239
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	2 cut(s)	117, 533
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	2 cut(s)	540, 562
BshFI	GGCC	3 cut(s)	76, 81, 481
BsiHKAI	GWGCWC	2 cut(s)	283, 353
BsiSI	CCGG	1 cut(s)	588
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	2 cut(s)	164, 239
BsmFI	GGGAC	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	424
BsnI	GGCC	3 cut(s)	76, 81, 481
Bsp1286I	GDGCHC	2 cut(s)	283, 353
Bsp13I	TCCGGA	1 cut(s)	587
Bsp1407I	TGTACA	1 cut(s)	643
Bsp143I	GATC	4 cut(s)	43, 206, 361, 571
Bsp19I	CCATGG	3 cut(s)	189, 321, 522
BspACI	CCGC	1 cut(s)	91
BspANI	GGCC	3 cut(s)	76, 81, 481
BspCNI	CTCAG	2 cut(s)	118, 534
BspEI	TCCGGA	1 cut(s)	587
BspMAI	CTGCAG	1 cut(s)	109
BspOI	GCTAGC	1 cut(s)	426
BspPI	GGATC	1 cut(s)	214
BspQI	GCTCTTC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	502
BsrGI	TGTACA	1 cut(s)	643
BssECI	CCNNGG	4 cut(s)	189, 274, 321, 522
BssMI	GATC	4 cut(s)	43, 206, 361, 571
BssSI	CACGAG	1 cut(s)	200
BssT1I	CCWWGG	4 cut(s)	189, 274, 321, 522
Bst2BI	CACGAG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	86
Bst6I	CTCTTC	1 cut(s)	52
BstAUI	TGTACA	1 cut(s)	643
BstC8I	GCNNGC	3 cut(s)	424, 725, 729
BstDEI	CTNAG	2 cut(s)	126, 542
BstDSI	CCRYGG	3 cut(s)	189, 321, 522
BstF5I	GGATG	3 cut(s)	30, 373, 627
BstKTI	GATC	4 cut(s)	46, 209, 364, 574
BstMBI	GATC	4 cut(s)	43, 206, 361, 571
BstMWI	GCNNNNNNNGC	4 cut(s)	547, 715, 724, 737
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	653
BstSCI	CCNGG	1 cut(s)	76
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	540, 562
BsuRI	GGCC	3 cut(s)	76, 81, 481
BtgI	CCRYGG	3 cut(s)	189, 321, 522
BtsCI	GGATG	3 cut(s)	30, 373, 627
BtsI	GCAGTG	1 cut(s)	433
BtsIMutI	CAGTG	2 cut(s)	82, 433
Cac8I	GCNNGC	3 cut(s)	424, 725, 729
CaiI	CAGNNNCTG	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	137, 644
CviAII	CATG	6 cut(s)	190, 322, 523, 618, 650, 659
CviQI	GTAC	2 cut(s)	137, 644
DdeI	CTNAG	2 cut(s)	126, 542
DpnI	GATC	4 cut(s)	45, 208, 363, 573
DpnII	GATC	4 cut(s)	43, 206, 361, 571
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco130I	CCWWGG	4 cut(s)	189, 274, 321, 522
Eco32I	GATATC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRI	GAATTC	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	76
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	4 cut(s)	189, 274, 321, 522
ErhI	CCWWGG	4 cut(s)	189, 274, 321, 522
FaeI	CATG	6 cut(s)	193, 325, 526, 621, 653, 662
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	6 cut(s)	189, 321, 522, 617, 649, 658
FbaI	TGATCA	3 cut(s)	43, 361, 571
Fnu4HI	GCNGC	2 cut(s)	551, 554
FokI	GGATG	3 cut(s)	37, 380, 634
Fsp4HI	GCNGC	2 cut(s)	551, 554
FspBI	CTAG	1 cut(s)	423
GluI	GCNGC	2 cut(s)	551, 554
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	3 cut(s)	76, 81, 481
HapII	CCGG	1 cut(s)	588
Hin1II	CATG	6 cut(s)	193, 325, 526, 621, 653, 662
HpaII	CCGG	1 cut(s)	588
HphI	GGTGA	4 cut(s)	80, 263, 416, 605
Hpy188I	TCNGA	2 cut(s)	475, 487
Hpy188III	TCNNGA	7 cut(s)	125, 236, 365, 588, 635, 674, 712
HpyAV	CCTTC	2 cut(s)	185, 680
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	3 cut(s)	107, 344, 495
HpyF10VI	GCNNNNNNNGC	4 cut(s)	547, 715, 724, 737
HpyF3I	CTNAG	2 cut(s)	126, 542
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	6 cut(s)	193, 325, 526, 621, 653, 662
Kpn2I	TCCGGA	1 cut(s)	587
Ksp22I	TGATCA	3 cut(s)	43, 361, 571
Kzo9I	GATC	4 cut(s)	43, 206, 361, 571
LguI	GCTCTTC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	278
Lsp1109I	GCAGC	2 cut(s)	540, 562
LweI	GCATC	2 cut(s)	44, 421
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	2 cut(s)	86, 301
MalI	GATC	4 cut(s)	45, 208, 363, 573
MboI	GATC	4 cut(s)	43, 206, 361, 571
MboII	GAAGA	7 cut(s)	69, 78, 93, 346, 419, 539, 650
MhlI	GDGCHC	2 cut(s)	283, 353
MlsI	TGGCCA	1 cut(s)	81
MluCI	AATT	4 cut(s)	118, 211, 488, 610
MluNI	TGGCCA	1 cut(s)	81
MnlI	CCTC	8 cut(s)	196, 232, 243, 471, 584, 694, 696, 708
Mox20I	TGGCCA	1 cut(s)	81
MroI	TCCGGA	1 cut(s)	587
MscI	TGGCCA	1 cut(s)	81
MseI	TTAA	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	553
MspI	CCGG	1 cut(s)	588
MspR9I	CCNGG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	424
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	4 cut(s)	547, 715, 724, 737
NcoI	CCATGG	3 cut(s)	189, 321, 522
NdeII	GATC	4 cut(s)	43, 206, 361, 571
NheI	GCTAGC	1 cut(s)	422
NlaIII	CATG	6 cut(s)	193, 325, 526, 621, 653, 662
NmuCI	GTSAC	2 cut(s)	86, 301
NspI	RCATGY	1 cut(s)	653
PciSI	GCTCTTC	1 cut(s)	52
PctI	GAATGC	1 cut(s)	424
PkrI	GCNGC	2 cut(s)	552, 555
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	74
PstI	CTGCAG	1 cut(s)	109
PstNI	CAGNNNCTG	1 cut(s)	77
PvuII	CAGCTG	1 cut(s)	553
RsaI	GTAC	2 cut(s)	138, 645
RsaNI	GTAC	2 cut(s)	137, 644
SapI	GCTCTTC	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	2 cut(s)	551, 554
Sau3AI	GATC	4 cut(s)	43, 206, 361, 571
Sau96I	GGNCC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	2 cut(s)	283, 353
SfaNI	GCATC	2 cut(s)	44, 421
SfcI	CTRYAG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	712
SmoI	CTYRAG	1 cut(s)	712
Sse9I	AATT	4 cut(s)	118, 211, 488, 610
SsiI	CCGC	1 cut(s)	91
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	4 cut(s)	189, 274, 321, 522
TaaI	ACNGT	1 cut(s)	86
TaiI	ACGT	1 cut(s)	52
TasI	AATT	4 cut(s)	118, 211, 488, 610
TatI	WGTACW	1 cut(s)	643
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TscAI	CASTG	2 cut(s)	89, 433
TseFI	GTSAC	2 cut(s)	86, 301
TseI	GCWGC	2 cut(s)	550, 553
Tsp45I	GTSAC	2 cut(s)	86, 301
TspDTI	ATGAA	5 cut(s)	303, 480, 513, 606, 710
TspGWI	ACGGA	1 cut(s)	124
TspRI	CASTG	2 cut(s)	89, 433
XapI	RAATTY	2 cut(s)	211, 488
XceI	RCATGY	1 cut(s)	653
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.