Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Reverse (-)

2025058 .. 2026167

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0012600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGGCATACATTGCAAAAGTGAGGCTACAATGAAAGAGAAAGGGATTCAGAAGGTACCGGATCCAGTTCCATTGAAATTAATGGATGGTGATACTGATACACGCACAGAAAAGAGCCACATTGCGTTGATGTTGCAAGAAATAAACAGCAGACTCAGAGATGCCGGTCACCTTACTGATTTGGACAATGTCCTGCTTGATGTTGATGAGAAGGAGAAAGAGTACAGGGCAAGAAGTGCCAATTCACGTGGTGAAGAATCTGGGAGAATGTTCAATTTCTTTAGCCACGGCTTTGCTCTTGCAGTGATTACTGTTAATATGAATGAGGTGGAAGCATTAGGTGAGTTGTTCAACAAGTTGAGTAGTTCGATTCTAGATGATGGGTTAATTCACAAGGAGGAGCTTAGGTTGGCTCTGTCCAAAATTCAAACAGGCGAAAATCTTTTTCTCGATAGGGAATTTAGGATTGCCAATGTTACTGATCTGTTTATGAGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

166

Amino Acids

18.71

Weight (kDa)

5.15

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	55
AccB1I	GGYRCC	1 cut(s)	55
AclWI	GGATC	2 cut(s)	56, 69
AcsI	RAATTY	2 cut(s)	423, 458
AcvI	CACGTG	1 cut(s)	248
AdeI	CACNNNGTG	1 cut(s)	251
AfaI	GTAC	2 cut(s)	57, 224
AgsI	TTSAA	4 cut(s)	76, 274, 352, 428
AluBI	AGCT	1 cut(s)	403
AluI	AGCT	1 cut(s)	403
AlwI	GGATC	2 cut(s)	56, 69
ApoI	RAATTY	2 cut(s)	423, 458
AseI	ATTAAT	1 cut(s)	80
Asp718I	GGTACC	1 cut(s)	55
AsuHPI	GGTGA	4 cut(s)	101, 161, 263, 353
BamHI	GGATCC	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	55
BbrPI	CACGTG	1 cut(s)	248
BccI	CCATC	2 cut(s)	80, 374
BceAI	ACGGC	1 cut(s)	304
BfaI	CTAG	1 cut(s)	374
BmiI	GGNNCC	2 cut(s)	57, 63
BmsI	GCATC	1 cut(s)	151
Bpu10I	CCTNAGC	1 cut(s)	404
BsaAI	YACGTR	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	286
BsaWI	WCCGGW	1 cut(s)	58
BsaXI	ACNNNNNCTCC	4 cut(s)	206, 236, 392, 422
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	2 cut(s)	10, 120
BseDI	CCNNGG	1 cut(s)	286
BseGI	GGATG	1 cut(s)	91
BseMI	GCAATG	2 cut(s)	10, 120
BseMII	CTCAG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	413
BshNI	GGYRCC	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	59, 165
Bsp143I	GATC	2 cut(s)	61, 481
BspCNI	CTCAG	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	57, 63
BspPI	GGATC	2 cut(s)	56, 69
BspT107I	GGYRCC	1 cut(s)	55
BsrDI	GCAATG	2 cut(s)	10, 120
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	2 cut(s)	61, 481
Bst4CI	ACNGT	1 cut(s)	313
BstAPI	GCANNNNNTGC	2 cut(s)	12, 236
BstBAI	YACGTR	1 cut(s)	248
BstDEI	CTNAG	2 cut(s)	155, 404
BstDSI	CCRYGG	1 cut(s)	286
BstEII	GGTNACC	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	2 cut(s)	64, 484
BstMBI	GATC	2 cut(s)	61, 481
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 236
BstPI	GGTNACC	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BtgI	CCRYGG	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	309
Cfr10I	RCCGGY	1 cut(s)	164
Csp6I	GTAC	2 cut(s)	56, 223
CspCI	CAANNNNNGTGG	2 cut(s)	229, 264
CviJI	RGCY	6 cut(s)	26, 117, 285, 291, 403, 413
CviKI_1	RGCY	6 cut(s)	26, 117, 285, 291, 403, 413
CviQI	GTAC	2 cut(s)	56, 223
DdeI	CTNAG	2 cut(s)	155, 404
DpnI	GATC	2 cut(s)	63, 483
DpnII	GATC	2 cut(s)	61, 481
DraIII	CACNNNGTG	1 cut(s)	251
Eco72I	CACGTG	1 cut(s)	248
Eco91I	GGTNACC	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	167
FaiI	YATR	3 cut(s)	8, 320, 491
FokI	GGATG	1 cut(s)	98
FspBI	CTAG	1 cut(s)	374
HapII	CCGG	2 cut(s)	59, 165
HinfI	GANTC	4 cut(s)	46, 153, 257, 370
HpaII	CCGG	2 cut(s)	59, 165
HphI	GGTGA	4 cut(s)	101, 161, 263, 353
Hpy188I	TCNGA	2 cut(s)	51, 158
Hpy188III	TCNNGA	2 cut(s)	374, 449
HpyAV	CCTTC	2 cut(s)	46, 205
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	3 cut(s)	15, 136, 302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 236
HpyF3I	CTNAG	2 cut(s)	155, 404
HpySE526I	ACGT	1 cut(s)	247
KpnI	GGTACC	1 cut(s)	59
Kzo9I	GATC	2 cut(s)	61, 481
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	7 cut(s)	72, 78, 178, 206, 211, 246, 417
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	2 cut(s)	167, 475
MalI	GATC	2 cut(s)	63, 483
MboI	GATC	2 cut(s)	61, 481
MboII	GAAGA	1 cut(s)	266
MflI	RGATCY	1 cut(s)	61
MluCI	AATT	6 cut(s)	77, 241, 274, 387, 423, 458
MlyI	GAGTC	1 cut(s)	147
MnlI	CCTC	3 cut(s)	16, 319, 391
MseI	TTAA	3 cut(s)	80, 315, 386
MspI	CCGG	2 cut(s)	59, 165
MwoI	GCNNNNNNNGC	2 cut(s)	12, 236
NdeII	GATC	2 cut(s)	61, 481
NlaIV	GGNNCC	2 cut(s)	57, 63
NmuCI	GTSAC	1 cut(s)	167
PfeI	GAWTC	3 cut(s)	46, 257, 370
PflFI	GACNNNGTC	1 cut(s)	188
PleI	GAGTC	1 cut(s)	147
PmaCI	CACGTG	1 cut(s)	248
PmlI	CACGTG	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	147
Ppu21I	YACGTR	1 cut(s)	248
PshBI	ATTAAT	1 cut(s)	80
PspCI	CACGTG	1 cut(s)	248
PspEI	GGTNACC	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	57, 63
PsuI	RGATCY	1 cut(s)	61
PsyI	GACNNNGTC	1 cut(s)	188
RsaI	GTAC	2 cut(s)	57, 224
RsaNI	GTAC	2 cut(s)	56, 223
SaqAI	TTAA	3 cut(s)	80, 315, 386
Sau3AI	GATC	2 cut(s)	61, 481
SchI	GAGTC	1 cut(s)	147
SetI	ASST	7 cut(s)	57, 174, 250, 330, 343, 405, 410
SfaNI	GCATC	1 cut(s)	151
Sse9I	AATT	6 cut(s)	77, 241, 274, 387, 423, 458
SspMI	CTAG	1 cut(s)	374
TaaI	ACNGT	1 cut(s)	313
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	2 cut(s)	368, 450
TasI	AATT	6 cut(s)	77, 241, 274, 387, 423, 458
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	3 cut(s)	46, 257, 370
Tru1I	TTAA	3 cut(s)	80, 315, 386
Tru9I	TTAA	3 cut(s)	80, 315, 386
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	2 cut(s)	47, 335
TspRI	CASTG	1 cut(s)	309
Tth111I	GACNNNGTC	1 cut(s)	188
VspI	ATTAAT	1 cut(s)	80
XapI	RAATTY	2 cut(s)	423, 458
XbaI	TCTAGA	1 cut(s)	373
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.