Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002865

Physical Location & Seq

Genomic Coordinates Forward (+)

15696901 .. 15702692

Gene Structure 5792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37099

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGCTTCTGGAGGTTTGCATTGCGTTGCTATTGCATATAGATCACTTGAATTGGAAAATGTTCTAATCAATAGTAATGGACAACTAGCGCAGTGGGAACTACCTGAGGATGACCTCATTTTACTAGCTATTGTTGGTATGAAGGATGATAGTCAACCGGGGATCAAGGACTCGGTGGAAATATTGCAAAGAGCTGGCATTAAGGTACGCCTTGTTACGCATGACAATCCTCAAACTGCAAAAGCAATTGCTAAGGAATGTAGCATACTTGCTTCTGATGGGTCAGATGTTACTGAGGAAAATCTTATTGAAGGAAAAGTGTTCCGAGAACTTTCTGATAGTCAGAGAGAAGGATTAGCAGAGAAGATTTTGGTAATGGCACGGTCTTCCCCCAATGACAAGCTTTTACTTGTGCAAGCACTGCAGAAAAGAGGAAAGATTGTTGCTGTCACTGGATATGTCAGTAATGATGCTCATGCACTACATGAGGCCGACATTGGTCTTGCTATGGGTATTCAAAGGACTGAAGTTGTTAAAGAGAGTTCAGATATCATAATCTTGGATGACAATTTTGCTACAGTAGCCAAGTGTTTTAGATGGGGACGATCGATGCATGAAAAGGTTCTGAAAGTTATGCAGCAGCAACTTACAGCCAATATTGTAGCAGTAACCATAAACTGCATGGCGGCAGTTTACTATCGTTACATCCCGCTCAATGCTGTGCAGTTTGTGTGGGTGAATCTTATCATATTTGGTCTTGGACCACTAGCACTGGCTACTGAATCTCCAGCTGATCACCTGATGAACGTACCCCCTATTGACCGAGGACAAACTCTTATAAAATATATTCAGTGGAAGAGACTGTTGACACAGGTTCTGTACCAAATTATTGCCCTGCTTGTCATCAATTTTCAAGGAGGGAGTTTACTGCAAAATTATACCAGAGACCATGCCACAAAAGTGAAGAATACAATGATATTCAACACATTTGTTGTTTGTCAGATTTCCATTGAATTTGGAGTTCGAAAGACTGGTATAGTGGACCATCCTTGGAAATGGATTACTGCTAACTCTGTGTTTCTGGGAATAGTTGGAATAATTCTTTTGATTCAGTTTATCATCATTGAGTTTCTTGGAAAGGCGTTTTTCATAGTCAGGCTTGACTGGAAAGAGTGGCAGTTTTCGCTGACCCTTGGCATTGTCGAGTTGTTGTTTGCACTGCTTCTATTTCTGAAGCACCTGGTACAAAGGAATCATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

420

Amino Acids

47.04

Weight (kDa)

6.8

Isoelectric Point (pI)

29.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	41 - 165	9.4e-07	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	236 - 406	5.5e-26	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06912
pyrus_communis	pycom14g06520
rosa_chinensis	RchiOBHm_Chr4g0398821 RchiOBHm_Chr4g0398831 RchiOBHm_Chr4g0398851 RchiOBHm_Chr4g0398861
rosa_laevigata	RLG00000009311 RLG00000009312 RLG00000009316
rosa_multiflora	Rmu_sc0002885.1_g000007 Rmu_sc0002885.1_g000009 Rmu_sc0004474.1_g000001 Rmu_sc0004751.1_g000005
rosa_roxburghii	Rroxscaffold_173G00435010 Rroxscaffold_5G00343860 Rroxscaffold_5G00343900 Rroxscaffold_5G00355000
rosa_rugosa	Rorug04G0012100 Rorug04G0012300 Rorug04G0012400 Rorug04G0012600
rosa_samantha	Rh4AG090100 Rh4AG090400 Rh4BG087200 Rh4BG087500 Rh4BG087600 Rh4BG087700 Rh4CG098200 Rh4CG098400 Rh4CG098700 Rh4DG081500 Rh4DG081600 Rh4DG081800 Rh4DG082000 Rh4DG082300 Rh4DG082700
rosa_wichuraiana	Rw4G007420 Rw4G007440 Rw4G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	839
AccBSI	CCGCTC	1 cut(s)	712
AciI	CCGC	2 cut(s)	686, 710
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	1013
AcuI	CTGAAG	2 cut(s)	546, 1253
AfaI	GTAC	4 cut(s)	207, 810, 881, 1245
AgsI	TTSAA	6 cut(s)	50, 311, 518, 914, 982, 1013
AjnI	CCWGG	1 cut(s)	1239
AleI	CACNNNNGTG	1 cut(s)	959
AluBI	AGCT	4 cut(s)	128, 194, 403, 791
AluI	AGCT	4 cut(s)	128, 194, 403, 791
Alw26I	GTCTC	2 cut(s)	853, 939
AlwI	GGATC	1 cut(s)	170
AlwNI	CAGNNNCTG	1 cut(s)	877
AoxI	GGCC	1 cut(s)	489
ApeKI	GCWGC	2 cut(s)	637, 640
ApoI	RAATTY	1 cut(s)	1013
Asp700I	GAANNNNTTC	2 cut(s)	60, 621
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	2 cut(s)	761, 1042
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	2 cut(s)	748, 788
AsuII	TTCGAA	1 cut(s)	1024
AvaII	GGWCC	2 cut(s)	761, 1042
AxyI	CCTNAGG	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	649, 652
BccI	CCATC	3 cut(s)	272, 591, 1053
BciT130I	CCWGG	1 cut(s)	1241
BclI	TGATCA	1 cut(s)	793
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	2 cut(s)	853, 939
BfaI	CTAG	3 cut(s)	86, 125, 767
BfmI	CTRYAG	2 cut(s)	422, 576
BisI	GCNGC	3 cut(s)	638, 641, 687
BlsI	GCNGC	3 cut(s)	639, 642, 688
Bme1390I	CCNGG	2 cut(s)	159, 1241
Bme18I	GGWCC	2 cut(s)	761, 1042
BmgT120I	GGNCC	2 cut(s)	761, 1042
BmrFI	CCNGG	2 cut(s)	159, 1241
BmsI	GCATC	2 cut(s)	460, 600
BoxI	GACNNNNGTC	1 cut(s)	498
BpiI	GAAGAC	1 cut(s)	378
BpmI	CTGGAG	2 cut(s)	30, 771
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	1024
BpuMI	CCSGG	1 cut(s)	159
Bsa29I	ATCGAT	1 cut(s)	608
BsaI	GGTCTC	1 cut(s)	939
BsaJI	CCNNGG	4 cut(s)	158, 823, 1049, 1192
BsaXI	ACNNNNNCTCC	2 cut(s)	769, 799
Bse1I	ACTGG	4 cut(s)	457, 777, 1036, 1169
Bse21I	CCTNAGG	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	1241
BseCI	ATCGAT	1 cut(s)	608
BseDI	CCNNGG	4 cut(s)	158, 823, 1049, 1192
BseGI	GGATG	5 cut(s)	115, 151, 568, 705, 1045
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	2 cut(s)	96, 285
BseNI	ACTGG	4 cut(s)	457, 777, 1036, 1169
BseXI	GCAGC	2 cut(s)	649, 652
BsgI	GTGCAG	1 cut(s)	743
Bsh1285I	CGRYCG	1 cut(s)	608
BshFI	GGCC	1 cut(s)	491
BshVI	ATCGAT	1 cut(s)	608
BsiEI	CGRYCG	1 cut(s)	608
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	615
BsmAI	GTCTC	2 cut(s)	853, 939
BsmFI	GGGAC	1 cut(s)	615
BsnI	GGCC	1 cut(s)	491
Bso31I	GGTCTC	1 cut(s)	939
Bsp119I	TTCGAA	1 cut(s)	1024
Bsp143I	GATC	4 cut(s)	41, 162, 605, 793
BspACI	CCGC	2 cut(s)	686, 710
BspANI	GGCC	1 cut(s)	491
BspCNI	CTCAG	2 cut(s)	97, 286
BspDI	ATCGAT	1 cut(s)	608
BspMAI	CTGCAG	1 cut(s)	426
BspPI	GGATC	1 cut(s)	170
BspT104I	TTCGAA	1 cut(s)	1024
BspTNI	GGTCTC	1 cut(s)	939
BsrBI	CCGCTC	1 cut(s)	712
BsrDI	GCAATG	1 cut(s)	19
BsrI	ACTGG	4 cut(s)	457, 777, 1036, 1169
BssECI	CCNNGG	4 cut(s)	158, 823, 1049, 1192
BssMI	GATC	4 cut(s)	41, 162, 605, 793
BssT1I	CCWWGG	2 cut(s)	1049, 1192
Bst2UI	CCWGG	1 cut(s)	1241
Bst4CI	ACNGT	3 cut(s)	384, 580, 864
Bst6I	CTCTTC	1 cut(s)	851
BstAPI	GCANNNNNTGC	1 cut(s)	421
BstBI	TTCGAA	1 cut(s)	1024
BstC8I	GCNNGC	2 cut(s)	196, 417
BstDEI	CTNAG	3 cut(s)	105, 252, 294
BstF5I	GGATG	5 cut(s)	115, 151, 568, 705, 1045
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	4 cut(s)	44, 165, 608, 796
BstMAI	GTCTC	2 cut(s)	853, 939
BstMBI	GATC	4 cut(s)	41, 162, 605, 793
BstMCI	CGRYCG	1 cut(s)	608
BstMWI	GCNNNNNNNGC	3 cut(s)	421, 581, 1183
BstNI	CCWGG	1 cut(s)	1241
BstPAI	GACNNNNGTC	1 cut(s)	498
BstSCI	CCNGG	2 cut(s)	157, 1239
BstSFI	CTRYAG	2 cut(s)	422, 576
BstV1I	GCAGC	2 cut(s)	649, 652
BstV2I	GAAGAC	1 cut(s)	378
Bsu15I	ATCGAT	1 cut(s)	608
Bsu36I	CCTNAGG	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	491
BsuTUI	ATCGAT	1 cut(s)	608
BtsCI	GGATG	5 cut(s)	115, 151, 568, 705, 1045
BtsI	GCAGTG	3 cut(s)	98, 419, 1217
BtsIMutI	CAGTG	6 cut(s)	98, 419, 450, 770, 857, 1217
Cac8I	GCNNGC	2 cut(s)	196, 417
CaiI	CAGNNNCTG	1 cut(s)	877
CfoI	GCGC	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	761, 1042
ClaI	ATCGAT	1 cut(s)	608
CsiI	ACCWGGT	1 cut(s)	1239
Csp6I	GTAC	4 cut(s)	206, 809, 880, 1244
CviAII	CATG	6 cut(s)	221, 476, 485, 614, 682, 950
CviQI	GTAC	4 cut(s)	206, 809, 880, 1244
DdeI	CTNAG	3 cut(s)	105, 252, 294
DpnI	GATC	4 cut(s)	43, 164, 607, 795
DpnII	GATC	4 cut(s)	41, 162, 605, 793
Eam1104I	CTCTTC	1 cut(s)	851
EarI	CTCTTC	1 cut(s)	851
Eco130I	CCWWGG	2 cut(s)	1049, 1192
Eco31I	GGTCTC	1 cut(s)	939
Eco32I	GATATC	1 cut(s)	550
Eco47I	GGWCC	2 cut(s)	761, 1042
Eco57I	CTGAAG	2 cut(s)	546, 1253
Eco81I	CCTNAGG	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	1239
EcoRV	GATATC	1 cut(s)	550
EcoT14I	CCWWGG	2 cut(s)	1049, 1192
EcoT22I	ATGCAT	1 cut(s)	615
ErhI	CCWWGG	2 cut(s)	1049, 1192
FaeI	CATG	6 cut(s)	224, 479, 488, 617, 685, 953
FaqI	GGGAC	1 cut(s)	615
FatI	CATG	6 cut(s)	220, 475, 484, 613, 681, 949
FauI	CCCGC	1 cut(s)	717
FbaI	TGATCA	1 cut(s)	793
Fnu4HI	GCNGC	3 cut(s)	638, 641, 687
FokI	GGATG	5 cut(s)	122, 158, 575, 692, 1032
Fsp4HI	GCNGC	3 cut(s)	638, 641, 687
FspBI	CTAG	3 cut(s)	86, 125, 767
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	3 cut(s)	638, 641, 687
GsuI	CTGGAG	2 cut(s)	30, 771
HaeIII	GGCC	1 cut(s)	491
HapII	CCGG	1 cut(s)	158
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	6 cut(s)	224, 479, 488, 617, 685, 953
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HincII	GTYRAC	2 cut(s)	155, 867
HindII	GTYRAC	2 cut(s)	155, 867
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	5 cut(s)	170, 739, 782, 1108, 1252
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	2 cut(s)	748, 788
Hpy166II	GTNNAC	5 cut(s)	155, 694, 867, 926, 1042
Hpy188I	TCNGA	9 cut(s)	277, 286, 326, 337, 345, 547, 627, 1002, 1233
Hpy188III	TCNNGA	1 cut(s)	9
Hpy8I	GTNNAC	5 cut(s)	155, 694, 867, 926, 1042
HpyAV	CCTTC	3 cut(s)	136, 305, 344
HpyCH4III	ACNGT	3 cut(s)	384, 580, 864
HpyCH4IV	ACGT	1 cut(s)	807
HpyF10VI	GCNNNNNNNGC	3 cut(s)	421, 581, 1183
HpyF3I	CTNAG	3 cut(s)	105, 252, 294
HpySE526I	ACGT	1 cut(s)	807
Hsp92II	CATG	6 cut(s)	224, 479, 488, 617, 685, 953
HspAI	GCGC	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	793
Kzo9I	GATC	4 cut(s)	41, 162, 605, 793
Lsp1109I	GCAGC	2 cut(s)	649, 652
LweI	GCATC	2 cut(s)	460, 600
MabI	ACCWGGT	1 cut(s)	1239
MaeI	CTAG	3 cut(s)	86, 125, 767
MaeII	ACGT	1 cut(s)	807
MaeIII	GTNAC	5 cut(s)	214, 289, 448, 667, 701
MalI	GATC	4 cut(s)	43, 164, 607, 795
MbiI	CCGCTC	1 cut(s)	712
MboI	GATC	4 cut(s)	41, 162, 605, 793
MboII	GAAGA	4 cut(s)	376, 378, 868, 976
MfeI	CAATTG	1 cut(s)	246
MluCI	AATT	9 cut(s)	50, 246, 568, 885, 907, 934, 1013, 1098, 1258
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	1072
MnlI	CCTC	9 cut(s)	5, 100, 125, 240, 289, 425, 481, 818, 911
Mph1103I	ATGCAT	1 cut(s)	615
MroXI	GAANNNNTTC	2 cut(s)	60, 621
MseI	TTAA	3 cut(s)	201, 534, 1261
MslI	CAYNNNNRTG	1 cut(s)	959
MspA1I	CMGCKG	1 cut(s)	791
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	159, 1241
MunI	CAATTG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	1241
MwoI	GCNNNNNNNGC	3 cut(s)	421, 581, 1183
NciI	CCSGG	1 cut(s)	159
NdeII	GATC	4 cut(s)	41, 162, 605, 793
NlaIII	CATG	6 cut(s)	224, 479, 488, 617, 685, 953
NmuCI	GTSAC	1 cut(s)	448
NsiI	ATGCAT	1 cut(s)	615
NspV	TTCGAA	1 cut(s)	1024
OliI	CACNNNNGTG	1 cut(s)	959
PdmI	GAANNNNTTC	2 cut(s)	60, 621
PfeI	GAWTC	4 cut(s)	739, 782, 1108, 1252
PkrI	GCNGC	3 cut(s)	639, 642, 688
Ple19I	CGATCG	1 cut(s)	608
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PshAI	GACNNNNGTC	1 cut(s)	498
PsiI	TTATAA	1 cut(s)	839
Psp6I	CCWGG	1 cut(s)	1239
PspGI	CCWGG	1 cut(s)	1239
PspPI	GGNCC	2 cut(s)	761, 1042
PstI	CTGCAG	1 cut(s)	426
PstNI	CAGNNNCTG	1 cut(s)	877
PvuI	CGATCG	1 cut(s)	608
PvuII	CAGCTG	1 cut(s)	791
RsaI	GTAC	4 cut(s)	207, 810, 881, 1245
RsaNI	GTAC	4 cut(s)	206, 809, 880, 1244
RseI	CAYNNNNRTG	1 cut(s)	959
SaqAI	TTAA	3 cut(s)	201, 534, 1261
SatI	GCNGC	3 cut(s)	638, 641, 687
Sau3AI	GATC	4 cut(s)	41, 162, 605, 793
Sau96I	GGNCC	2 cut(s)	761, 1042
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	159, 1241
SexAI	ACCWGGT	1 cut(s)	1239
SfaNI	GCATC	2 cut(s)	460, 600
SfcI	CTRYAG	2 cut(s)	422, 576
SfuI	TTCGAA	1 cut(s)	1024
SinI	GGWCC	2 cut(s)	761, 1042
SmiMI	CAYNNNNRTG	1 cut(s)	959
Sse9I	AATT	9 cut(s)	50, 246, 568, 885, 907, 934, 1013, 1098, 1258
SsiI	CCGC	2 cut(s)	686, 710
SspI	AATATT	2 cut(s)	183, 658
SspMI	CTAG	3 cut(s)	86, 125, 767
StyD4I	CCNGG	2 cut(s)	157, 1239
StyI	CCWWGG	2 cut(s)	1049, 1192
TaaI	ACNGT	3 cut(s)	384, 580, 864
TaiI	ACGT	1 cut(s)	810
TaqI	TCGA	3 cut(s)	608, 1024, 1203
TaqII	GACCGA	1 cut(s)	837
TasI	AATT	9 cut(s)	50, 246, 568, 885, 907, 934, 1013, 1098, 1258
TauI	GCSGC	1 cut(s)	689
TfiI	GAWTC	4 cut(s)	739, 782, 1108, 1252
Tru1I	TTAA	3 cut(s)	201, 534, 1261
Tru9I	TTAA	3 cut(s)	201, 534, 1261
TscAI	CASTG	6 cut(s)	98, 426, 457, 777, 857, 1224
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	2 cut(s)	637, 640
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	4 cut(s)	155, 630, 818, 1138
TspRI	CASTG	6 cut(s)	98, 426, 457, 777, 857, 1224
VpaK11BI	GGWCC	2 cut(s)	761, 1042
XapI	RAATTY	1 cut(s)	1013
XcmI	CCANNNNNNNNNTGG	1 cut(s)	679
XmnI	GAANNNNTTC	2 cut(s)	60, 621
XspI	CTAG	3 cut(s)	86, 125, 767
Zsp2I	ATGCAT	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.