Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005808

Physical Location & Seq

Genomic Coordinates Forward (+)

19008007 .. 19010340

Gene Structure 2334 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG090500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGAAACGACGATGACTATGACTAAGGCAAGCCTCAAACCCAAACCGATGCGACCCAAAAGTCCTTACCTTCCCCATCCATTGAACTCAAGAAGAATCTTCAAGTCCTTGTCTCTCCCCAATCATTCAGTGGGAGCCCCGACACTGGTGGATCAATTCGACCCGACAATCCCAATAGAGCGAGCCGTGACTCCACCCAGCTCATGGTACACCGACCCTTCCTTTTACGCTCAAGAACTCGACTCCGTTTTCTACCGTGGCTGGCAAGCCGTAGGGTATACTGAACAGATAAAGAATCCTGGGGACTTTTTCACCGGCAGATTGGGGAATGTAGAGTTTGTTGTGTGTCGAGATGAGCATGGCAAGCTTCAAGCTTTCCACAATGTTTGTCGTCATCATGCCTCAATTCTTGCCTACGGAAGTGGCCGAAAGTCGTGTTTTGTGTGCCCTTATCATGCATGGACATATGGGTTAGATGGCGCGCTTCTCAAGGCAACTAGGATAACAGGAATACAGAACTTCAATAAACATGAGTTTGGGCTTACACCAGTAAAAGTAGCTACTTGGGGACCGTTTGTTCTTGCAAATATGGAGCCAGAGGTTGACAGTGATGTAGAAATCGTGGAGAGCGAATGGCTTGGGAGCTCTTCAGATGTACTGAGTACAAATGGGGTTGATACATCATTAAGTTATGTTTGTAGACGTGAATATACGATTGAATGTAACTGGAAGGTCTTTTGTGACAACTACTTAGATGGGGGATATCATGTGCCTTGTGCACATAAAGGCCTAGCATCTGGTCTTAACCTTGATGGTTACTCTACCACAGTATACGAAAAGGTCAGCATTCAGAAGTGTGAGGGTGGTTCAACAGAGAGGAAAAATGACTATGATCGGCTTGGATCAAAAGCCCTTTATGCATTCATTTATCCCAATTTCATGATTAATAGGTATGGACCATGGATGGACACCAATCTAGTAATCCCTCTTGGACCTAGGAAATGTCAGGTGATATTTGATTACTTCCTTGAAGCTTCGGTCAAGGATGACAGAGATTACATAGAGAGGAGTTTGAAAGAGAGTGAAAAAGTACAGATGGAAGATGTCATGCTGTGTGAAGGTGTTCAAAGAGGTCTTGAATCACCCGCATACAATATTGGTAGATACGCTCCAACGGTTGAAAATGCAATGCACCATTTTCACTGTCTGCTACATGAGAGCATAAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 map00260

Pfam Domains

Protein Families

Rieske Ring_hydroxyl_A

Protein Analysis

410

Amino Acids

46.47

Weight (kDa)

6.28

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rieske	PF00355	88 - 174	4.4e-18	Rieske [2Fe-2S] domain
Ring_hydroxyl_A	PF00848	229 - 406	1.2e-30	Ring hydroxylating alpha subunit (catalytic domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29890
fragaria_vesca	FvH4_4g06930 FvH4_4g06930 FvH4_4g06930 FvH4_4g06930 FvH4_4g06930
malus_domestica	MD13G1241100.v1.1
prunus_persica	Prupe.1G072500_v2.0.a1 Prupe.1G072500_v2.0.a1 Prupe.1G072500_v2.0.a1 Prupe.1G072500_v2.0.a1
pyrus_communis	pycom13g21200
rosa_chinensis	RchiOBHm_Chr4g0398871
rosa_laevigata	RLG00000009310 RLG00000009315
rosa_multiflora	Rmu_ssc0000064.1_g000028
rosa_roxburghii	Rroxscaffold_5G00343910 Rroxscaffold_7G00183470
rosa_rugosa	Rorug04G0012400 Rorug04G0012800 Rorug04G0012900 Rorug04G0013000 Rorug04G0013100
rosa_samantha	Rh4AG090500 Rh4BG087800 Rh4CG098800 Rh4DG082800
rosa_wichuraiana	Rw4G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	60
AccB7I	CCANNNNNTGG	1 cut(s)	204
AccI	GTMKAC	3 cut(s)	278, 700, 831
AccII	CGCG	1 cut(s)	482
AciI	CCGC	1 cut(s)	1146
AclWI	GGATC	2 cut(s)	159, 910
AcoI	YGGCCR	1 cut(s)	424
AcuI	CTGAAG	1 cut(s)	633
AfaI	GTAC	4 cut(s)	209, 657, 664, 1092
AfiI	CCNNNNNNNGG	2 cut(s)	145, 204
AjiI	CACGTC	1 cut(s)	704
AjnI	CCWGG	1 cut(s)	298
AloI	GAACNNNNNNTCC	2 cut(s)	561, 593
AluBI	AGCT	6 cut(s)	201, 367, 374, 560, 645, 1034
AluI	AGCT	6 cut(s)	201, 367, 374, 560, 645, 1034
Alw21I	GWGCWC	2 cut(s)	647, 781
Alw26I	GTCTC	1 cut(s)	117
Alw44I	GTGCAC	1 cut(s)	777
AlwI	GGATC	2 cut(s)	159, 910
AoxI	GGCC	2 cut(s)	424, 787
ApaLI	GTGCAC	1 cut(s)	777
AseI	ATTAAT	1 cut(s)	945
Asp700I	GAANNNNTTC	1 cut(s)	1122
AspA2I	CCTAGG	1 cut(s)	995
AspLEI	GCGC	2 cut(s)	482, 484
AspS9I	GGNCC	3 cut(s)	569, 956, 992
AsuHPI	GGTGA	3 cut(s)	304, 1021, 1134
AvaII	GGWCC	3 cut(s)	569, 956, 992
AvrII	CCTAGG	1 cut(s)	995
BaeGI	GKGCMC	2 cut(s)	449, 781
BanII	GRGCYC	2 cut(s)	139, 647
Bbv12I	GWGCWC	2 cut(s)	647, 781
BccI	CCATC	6 cut(s)	84, 470, 749, 806, 958, 1090
BceAI	ACGGC	2 cut(s)	170, 254
BciT130I	CCWGG	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	4 cut(s)	498, 791, 977, 996
BlnI	CCTAGG	1 cut(s)	995
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	3 cut(s)	569, 956, 992
BmgBI	CACGTC	1 cut(s)	704
BmgT120I	GGNCC	3 cut(s)	569, 956, 992
BmiI	GGNNCC	3 cut(s)	136, 570, 594
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	2 cut(s)	39, 803
BpuEI	CTTGAG	3 cut(s)	73, 216, 473
BsaJI	CCNNGG	4 cut(s)	256, 299, 959, 995
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 204
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	3 cut(s)	150, 548, 731
Bse3DI	GCAATG	1 cut(s)	1194
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	4 cut(s)	256, 299, 959, 995
BseGI	GGATG	3 cut(s)	76, 969, 1051
BseLI	CCNNNNNNNGG	2 cut(s)	145, 204
BseMI	GCAATG	1 cut(s)	1194
BseMII	CTCAG	1 cut(s)	650
BseNI	ACTGG	3 cut(s)	150, 548, 731
BsePI	GCGCGC	1 cut(s)	480
BseRI	GAGGAG	1 cut(s)	1081
BseSI	GKGCMC	2 cut(s)	449, 781
BseYI	CCCAGC	1 cut(s)	197
Bsh1236I	CGCG	1 cut(s)	482
BshFI	GGCC	2 cut(s)	426, 789
BsiHKAI	GWGCWC	2 cut(s)	647, 781
BsiSI	CCGG	1 cut(s)	315
BslFI	GGGAC	2 cut(s)	317, 582
BslI	CCNNNNNNNGG	2 cut(s)	145, 204
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	2 cut(s)	317, 582
BsmI	GAATGC	2 cut(s)	846, 920
BsnI	GGCC	2 cut(s)	426, 789
Bsp1286I	GDGCHC	4 cut(s)	139, 449, 647, 781
Bsp143I	GATC	3 cut(s)	151, 892, 902
Bsp19I	CCATGG	1 cut(s)	959
BspACI	CCGC	1 cut(s)	1146
BspANI	GGCC	2 cut(s)	426, 789
BspCNI	CTCAG	1 cut(s)	651
BspFNI	CGCG	1 cut(s)	482
BspHI	TCATGA	1 cut(s)	939
BspLI	GGNNCC	3 cut(s)	136, 570, 594
BspPI	GGATC	2 cut(s)	159, 910
BspQI	GCTCTTC	1 cut(s)	652
BsrDI	GCAATG	1 cut(s)	1194
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	3 cut(s)	150, 548, 731
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	4 cut(s)	256, 299, 959, 995
BssHII	GCGCGC	1 cut(s)	480
BssMI	GATC	3 cut(s)	151, 892, 902
BssNAI	GTATAC	2 cut(s)	279, 832
BssT1I	CCWWGG	2 cut(s)	959, 995
Bst1107I	GTATAC	2 cut(s)	279, 832
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	6 cut(s)	257, 573, 608, 829, 1177, 1205
Bst6I	CTCTTC	1 cut(s)	652
BstC8I	GCNNGC	6 cut(s)	31, 183, 263, 267, 365, 482
BstDEI	CTNAG	3 cut(s)	24, 659, 751
BstDSI	CCRYGG	2 cut(s)	256, 959
BstF5I	GGATG	3 cut(s)	76, 969, 1051
BstFNI	CGCG	1 cut(s)	482
BstHHI	GCGC	2 cut(s)	482, 484
BstKTI	GATC	3 cut(s)	154, 895, 905
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	3 cut(s)	151, 892, 902
BstMWI	GCNNNNNNNGC	2 cut(s)	364, 917
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	298
BstSLI	GKGCMC	2 cut(s)	449, 781
BstUI	CGCG	1 cut(s)	482
BstZ17I	GTATAC	2 cut(s)	279, 832
BsuRI	GGCC	2 cut(s)	426, 789
BtgI	CCRYGG	2 cut(s)	256, 959
BtrI	CACGTC	1 cut(s)	704
BtsCI	GGATG	3 cut(s)	76, 969, 1051
BtsIMutI	CAGTG	4 cut(s)	135, 143, 613, 1201
Cac8I	GCNNGC	6 cut(s)	31, 183, 263, 267, 365, 482
CciI	TCATGA	1 cut(s)	939
CfoI	GCGC	2 cut(s)	482, 484
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	3 cut(s)	569, 956, 992
Csp6I	GTAC	4 cut(s)	208, 656, 663, 1091
CspCI	CAANNNNNGTGG	2 cut(s)	368, 403
CviQI	GTAC	4 cut(s)	208, 656, 663, 1091
DdeI	CTNAG	3 cut(s)	24, 659, 751
DpnI	GATC	3 cut(s)	153, 894, 904
DpnII	GATC	3 cut(s)	151, 892, 902
DrdI	GACNNNNNNGTC	1 cut(s)	60
DseDI	GACNNNNNNGTC	1 cut(s)	60
EaeI	YGGCCR	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	652
EarI	CTCTTC	1 cut(s)	652
Ecl136II	GAGCTC	1 cut(s)	645
Eco130I	CCWWGG	2 cut(s)	959, 995
Eco147I	AGGCCT	1 cut(s)	789
Eco24I	GRGCYC	2 cut(s)	139, 647
Eco32I	GATATC	1 cut(s)	764
Eco47I	GGWCC	3 cut(s)	569, 956, 992
Eco53kI	GAGCTC	1 cut(s)	645
Eco57I	CTGAAG	1 cut(s)	633
EcoICRI	GAGCTC	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	298
EcoRV	GATATC	1 cut(s)	764
EcoT14I	CCWWGG	2 cut(s)	959, 995
EcoT22I	ATGCAT	2 cut(s)	460, 922
EcoT38I	GRGCYC	2 cut(s)	139, 647
ErhI	CCWWGG	2 cut(s)	959, 995
FaqI	GGGAC	2 cut(s)	317, 582
FauI	CCCGC	1 cut(s)	1153
FauNDI	CATATG	1 cut(s)	466
FblI	GTMKAC	3 cut(s)	278, 700, 831
FokI	GGATG	3 cut(s)	63, 976, 1058
FriOI	GRGCYC	2 cut(s)	139, 647
FspBI	CTAG	4 cut(s)	498, 791, 977, 996
GlaI	GCGC	2 cut(s)	481, 483
GsaI	CCCAGC	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	426, 789
HapII	CCGG	1 cut(s)	315
HhaI	GCGC	2 cut(s)	482, 484
Hin6I	GCGC	2 cut(s)	480, 482
HinP1I	GCGC	2 cut(s)	480, 482
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HindIII	AAGCTT	3 cut(s)	365, 372, 1032
HinfI	GANTC	5 cut(s)	96, 190, 242, 295, 1139
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	3 cut(s)	304, 1021, 1134
Hpy166II	GTNNAC	6 cut(s)	210, 279, 604, 701, 779, 832
Hpy188I	TCNGA	2 cut(s)	652, 852
Hpy188III	TCNNGA	5 cut(s)	90, 233, 350, 940, 1136
Hpy8I	GTNNAC	6 cut(s)	210, 279, 604, 701, 779, 832
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	4 cut(s)	80, 228, 724, 1112
HpyCH4III	ACNGT	6 cut(s)	257, 573, 608, 829, 1177, 1205
HpyCH4IV	ACGT	1 cut(s)	703
HpyCH4V	TGCA	6 cut(s)	458, 584, 779, 920, 1187, 1192
HpyF10VI	GCNNNNNNNGC	2 cut(s)	364, 917
HpyF3I	CTNAG	3 cut(s)	24, 659, 751
HpySE526I	ACGT	1 cut(s)	703
HspAI	GCGC	2 cut(s)	480, 482
Kzo9I	GATC	3 cut(s)	151, 892, 902
LguI	GCTCTTC	1 cut(s)	652
LmnI	GCTCC	4 cut(s)	134, 592, 642, 1174
LweI	GCATC	2 cut(s)	39, 803
MaeI	CTAG	4 cut(s)	498, 791, 977, 996
MaeII	ACGT	1 cut(s)	703
MaeIII	GTNAC	4 cut(s)	187, 722, 740, 815
MalI	GATC	3 cut(s)	153, 894, 904
MboI	GATC	3 cut(s)	151, 892, 902
MboII	GAAGA	4 cut(s)	91, 105, 639, 1112
MhlI	GDGCHC	4 cut(s)	139, 449, 647, 781
MluCI	AATT	3 cut(s)	155, 405, 934
MlyI	GAGTC	2 cut(s)	184, 236
MmeI	TCCRAC	1 cut(s)	1196
MnlI	CCTC	8 cut(s)	44, 412, 592, 853, 870, 996, 1059, 1124
Mph1103I	ATGCAT	2 cut(s)	460, 922
MroXI	GAANNNNTTC	1 cut(s)	1122
MseI	TTAA	3 cut(s)	686, 804, 945
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	1 cut(s)	300
Mva1269I	GAATGC	2 cut(s)	846, 920
MvaI	CCWGG	1 cut(s)	300
MvnI	CGCG	1 cut(s)	482
MwoI	GCNNNNNNNGC	2 cut(s)	364, 917
NcoI	CCATGG	1 cut(s)	959
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	3 cut(s)	151, 892, 902
NlaIV	GGNNCC	3 cut(s)	136, 570, 594
NmuCI	GTSAC	2 cut(s)	187, 740
NsiI	ATGCAT	2 cut(s)	460, 922
PagI	TCATGA	1 cut(s)	939
PauI	GCGCGC	1 cut(s)	480
PceI	AGGCCT	1 cut(s)	789
PciSI	GCTCTTC	1 cut(s)	652
PcsI	WCGNNNNNNNCGW	1 cut(s)	627
PctI	GAATGC	2 cut(s)	846, 920
PdmI	GAANNNNTTC	1 cut(s)	1122
PfeI	GAWTC	3 cut(s)	96, 295, 1139
PflMI	CCANNNNNTGG	1 cut(s)	204
PleI	GAGTC	2 cut(s)	184, 236
PpsI	GAGTC	2 cut(s)	184, 236
PshBI	ATTAAT	1 cut(s)	945
Psp124BI	GAGCTC	1 cut(s)	647
Psp6I	CCWGG	1 cut(s)	298
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	3 cut(s)	136, 570, 594
PspPI	GGNCC	3 cut(s)	569, 956, 992
PteI	GCGCGC	1 cut(s)	480
RsaI	GTAC	4 cut(s)	209, 657, 664, 1092
RsaNI	GTAC	4 cut(s)	208, 656, 663, 1091
SacI	GAGCTC	1 cut(s)	647
SapI	GCTCTTC	1 cut(s)	652
SaqAI	TTAA	3 cut(s)	686, 804, 945
Sau3AI	GATC	3 cut(s)	151, 892, 902
Sau96I	GGNCC	3 cut(s)	569, 956, 992
SchI	GAGTC	2 cut(s)	184, 236
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	4 cut(s)	139, 449, 647, 781
SfaNI	GCATC	2 cut(s)	39, 803
SinI	GGWCC	3 cut(s)	569, 956, 992
SmlI	CTYRAG	3 cut(s)	88, 231, 488
SmoI	CTYRAG	3 cut(s)	88, 231, 488
Sse9I	AATT	3 cut(s)	155, 405, 934
SseBI	AGGCCT	1 cut(s)	789
SsiI	CCGC	1 cut(s)	1146
SspI	AATATT	1 cut(s)	1156
SspMI	CTAG	4 cut(s)	498, 791, 977, 996
SstI	GAGCTC	1 cut(s)	647
StuI	AGGCCT	1 cut(s)	789
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	2 cut(s)	959, 995
TaaI	ACNGT	6 cut(s)	257, 573, 608, 829, 1177, 1205
TaiI	ACGT	1 cut(s)	706
TaqI	TCGA	3 cut(s)	159, 240, 349
TaqII	GACCGA	1 cut(s)	1027
TasI	AATT	3 cut(s)	155, 405, 934
TatI	WGTACW	3 cut(s)	655, 662, 1090
TfiI	GAWTC	3 cut(s)	96, 295, 1139
Tru1I	TTAA	3 cut(s)	686, 804, 945
Tru9I	TTAA	3 cut(s)	686, 804, 945
TscAI	CASTG	4 cut(s)	135, 150, 613, 1208
TseFI	GTSAC	2 cut(s)	187, 740
Tsp45I	GTSAC	2 cut(s)	187, 740
TspDTI	ATGAA	2 cut(s)	913, 928
TspGWI	ACGGA	2 cut(s)	235, 432
TspRI	CASTG	4 cut(s)	135, 150, 613, 1208
Van91I	CCANNNNNTGG	1 cut(s)	204
VneI	GTGCAC	1 cut(s)	777
VpaK11BI	GGWCC	3 cut(s)	569, 956, 992
VspI	ATTAAT	1 cut(s)	945
XcmI	CCANNNNNNNNNTGG	2 cut(s)	127, 201
XmaJI	CCTAGG	1 cut(s)	995
XmiI	GTMKAC	3 cut(s)	278, 700, 831
XmnI	GAANNNNTTC	1 cut(s)	1122
XspI	CTAG	4 cut(s)	498, 791, 977, 996
Zsp2I	ATGCAT	2 cut(s)	460, 922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.